; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

CmoCh12G007680 (gene) of Cucurbita moschata (Rifu) v1 genome

Gene IDCmoCh12G007680
OrganismCucurbita moschata Rifu (Cucurbita moschata (Rifu) v1)
DescriptionNAD(P)H-quinone oxidoreductase chain 4, chloroplastic
Genome locationCmo_Chr12:6157904..6162148
RNA-Seq ExpressionCmoCh12G007680
SyntenyCmoCh12G007680
Gene Ontology termsGO:0044237 - cellular metabolic process (biological process)
GO:0009536 - plastid (cellular component)
GO:0034357 - photosynthetic membrane (cellular component)
GO:0005488 - binding (molecular function)
GO:0016491 - oxidoreductase activity (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
QXJ79888.1 NADH dehydrogenase subunit D [Gymnadenia crassinervis]4.3e-1838.6Show/hide
Query:  CGTGNNIQSISDFLLLLLL-----NHRLYPVPRG-TLEYLYASSRNLIQNGSIWIGSDQYG-LPPRPFSFFTLVDHSRHNSNNLCSFNSGQG-NFKTKNS
        C  GNNI     + L   +      + +   PRG TL+Y+YA S NLI++GSIWI SDQYG +    F   +LV  SR+N+N LCSFN  +   FK + +
Subjt:  CGTGNNIQSISDFLLLLLL-----NHRLYPVPRG-TLEYLYASSRNLIQNGSIWIGSDQYG-LPPRPFSFFTLVDHSRHNSNNLCSFNSGQG-NFKTKNS

Query:  LFLRTEWSYLTNNLSWISWR---------------CPFLFFLAGTSYDRILLVYLDEMGYL-------------IDGASLALPGMSSFVAEFIV---IIT
            +   ++   +  I+                    LFFL GT +DRI  VYL+EMG +                ASLALPGMS FVAE +V   IIT
Subjt:  LFLRTEWSYLTNNLSWISWR---------------CPFLFFLAGTSYDRILLVYLDEMGYL-------------IDGASLALPGMSSFVAEFIV---IIT

Query:  SQKSLVMRKTLITLV
        S K L+M K L+T V
Subjt:  SQKSLVMRKTLITLV

RXI09986.1 hypothetical protein DVH24_037507 [Malus domestica]1.7e-3861.68Show/hide
Query:  RGTLEYLYASSRNLIQNGSIWIGSDQYG-LPPRPFSFFTLVDHSRHNSNNLCSFN-SGQGNFKTKNSLFLRTEWSYLTNNLSWISWRCPFLFFLAGTSYD
        RGTL+YLYA SRNLI+NGS+WIGSDQYG + PRPF   +LVD+SRHNSNNLCSFN S   N+  K     RT+ S+ TNNLS I WRC   FFLAGTSYD
Subjt:  RGTLEYLYASSRNLIQNGSIWIGSDQYG-LPPRPFSFFTLVDHSRHNSNNLCSFN-SGQGNFKTKNSLFLRTEWSYLTNNLSWISWRCPFLFFLAGTSYD

Query:  RILLVYLDEMG-------------YLIDGASLALPGMSSFVAEFIV---IITSQKSLVMRKTLITLV
        RI LVYLDEMG              ++  ASLALPGMS FVAE +V   I+TSQK L+M K LIT V
Subjt:  RILLVYLDEMG-------------YLIDGASLALPGMSSFVAEFIV---IITSQKSLVMRKTLITLV

YP_009561662.1 NADH-plastoquinone oxidoreductase subunit 4 [Commiphora gileadensis]5.3e-1658.42Show/hide
Query:  FFLAGTSYDRILLVYLDEMGYL-------------IDGASLALPGMSSFVAEFIV---IITSQKSLVMRKTLITLVHGNWNHINSHLFIIYLTPDVLWIQ
        FFLAGTSYDRI L YLDEMG L             +  ASLALPGMS FVAE IV   IITSQK     K      +GNWN INS+LFIIY+T +VLW+Q
Subjt:  FFLAGTSYDRILLVYLDEMGYL-------------IDGASLALPGMSSFVAEFIV---IITSQKSLVMRKTLITLVHGNWNHINSHLFIIYLTPDVLWIQ

Query:  A
        A
Subjt:  A

YP_009679141.1 NADH-plastoquinone oxidoreductase subunit 4 [Teucrium mascatense]9.6e-2643Show/hide
Query:  RGTLEYLYASSRNLIQNGSIWIGSDQYG-LPPRPFSFFTLVDHSRHNSNNLCSFN-SGQGNFKTKNSLFL--------RTEWSY---------LTNNLSW
        RGTL+YLYASSRNLI+NGSIWI SD+YG + PR FS F+LV++SR N+NNLCSFN S    FK KNSLFL           W Y          TNNLSW
Subjt:  RGTLEYLYASSRNLIQNGSIWIGSDQYG-LPPRPFSFFTLVDHSRHNSNNLCSFN-SGQGNFKTKNSLFL--------RTEWSY---------LTNNLSW

Query:  ISWRCPFLFFLAGTSYDRILL------------VYLDEMGYLIDGASLALPGMSSFVAEFIVIITSQ---KSLVMRKTLITLVHGNWNHINSHLFIIYLT
        I W C F         +   L              + ++  L DG    +     F      +  +    K     KT     +GNWN INS+LFIIY+T
Subjt:  ISWRCPFLFFLAGTSYDRILL------------VYLDEMGYLIDGASLALPGMSSFVAEFIVIITSQ---KSLVMRKTLITLVHGNWNHINSHLFIIYLT

Query:  PDVLWIQ
         DVLWIQ
Subjt:  PDVLWIQ

YP_009724473.1 NADH-plastoquinone oxidoreductase subunit 4 [Senegalia senegal]1.8e-3242.86Show/hide
Query:  CGTGNNIQ---------SISDFLLLLLLNHRLYPVPRGTLEYLYASSRNLIQNGSIWIGSDQYG-LPPRPFSFFTLVDHSRHNSNNLCSFN-SGQGNFKT
        CGTGNNI           I+D+ L  ++        RGTL+YLYA SRNLI+NGS+WIGS+ YG + PR FS F+LV+  R NSNNLCSFN S    FK 
Subjt:  CGTGNNIQ---------SISDFLLLLLLNHRLYPVPRGTLEYLYASSRNLIQNGSIWIGSDQYG-LPPRPFSFFTLVDHSRHNSNNLCSFN-SGQGNFKT

Query:  KNSLFLR-----------------TEWSYLTNNLSWISWRCPFLFFLAGTSYDRILL------------VYLDEMGYLIDGASLALPGMSSF---VAEFI
        KNSLFLR                 T+ S+ TNN SWI W C F        Y+  LL              +    YLIDG S  + G   F   +  F 
Subjt:  KNSLFLR-----------------TEWSYLTNNLSWISWRCPFLFFLAGTSYDRILL------------VYLDEMGYLIDGASLALPGMSSF---VAEFI

Query:  VIITSQKSLVMRKTLITLVHGNWNHINSHLFIIYLTPDVLWIQAF
              K     K      +GNWN INS+LFIIY+TPDVLWIQ F
Subjt:  VIITSQKSLVMRKTLITLVHGNWNHINSHLFIIYLTPDVLWIQAF

TrEMBL top hitse value%identityAlignment
A0A410PAA8 NADH-plastoquinone oxidoreductase subunit 42.6e-1658.42Show/hide
Query:  FFLAGTSYDRILLVYLDEMGYL-------------IDGASLALPGMSSFVAEFIV---IITSQKSLVMRKTLITLVHGNWNHINSHLFIIYLTPDVLWIQ
        FFLAGTSYDRI L YLDEMG L             +  ASLALPGMS FVAE IV   IITSQK     K      +GNWN INS+LFIIY+T +VLW+Q
Subjt:  FFLAGTSYDRILLVYLDEMGYL-------------IDGASLALPGMSSFVAEFIV---IITSQKSLVMRKTLITLVHGNWNHINSHLFIIYLTPDVLWIQ

Query:  A
        A
Subjt:  A

A0A498KQZ6 Proton_antipo_M domain-containing protein8.2e-3961.68Show/hide
Query:  RGTLEYLYASSRNLIQNGSIWIGSDQYG-LPPRPFSFFTLVDHSRHNSNNLCSFN-SGQGNFKTKNSLFLRTEWSYLTNNLSWISWRCPFLFFLAGTSYD
        RGTL+YLYA SRNLI+NGS+WIGSDQYG + PRPF   +LVD+SRHNSNNLCSFN S   N+  K     RT+ S+ TNNLS I WRC   FFLAGTSYD
Subjt:  RGTLEYLYASSRNLIQNGSIWIGSDQYG-LPPRPFSFFTLVDHSRHNSNNLCSFN-SGQGNFKTKNSLFLRTEWSYLTNNLSWISWRCPFLFFLAGTSYD

Query:  RILLVYLDEMG-------------YLIDGASLALPGMSSFVAEFIV---IITSQKSLVMRKTLITLV
        RI LVYLDEMG              ++  ASLALPGMS FVAE +V   I+TSQK L+M K LIT V
Subjt:  RILLVYLDEMG-------------YLIDGASLALPGMSSFVAEFIV---IITSQKSLVMRKTLITLV

A0A4Y6I5A8 NADH-plastoquinone oxidoreductase subunit 44.6e-2643Show/hide
Query:  RGTLEYLYASSRNLIQNGSIWIGSDQYG-LPPRPFSFFTLVDHSRHNSNNLCSFN-SGQGNFKTKNSLFL--------RTEWSY---------LTNNLSW
        RGTL+YLYASSRNLI+NGSIWI SD+YG + PR FS F+LV++SR N+NNLCSFN S    FK KNSLFL           W Y          TNNLSW
Subjt:  RGTLEYLYASSRNLIQNGSIWIGSDQYG-LPPRPFSFFTLVDHSRHNSNNLCSFN-SGQGNFKTKNSLFL--------RTEWSY---------LTNNLSW

Query:  ISWRCPFLFFLAGTSYDRILL------------VYLDEMGYLIDGASLALPGMSSFVAEFIVIITSQ---KSLVMRKTLITLVHGNWNHINSHLFIIYLT
        I W C F         +   L              + ++  L DG    +     F      +  +    K     KT     +GNWN INS+LFIIY+T
Subjt:  ISWRCPFLFFLAGTSYDRILL------------VYLDEMGYLIDGASLALPGMSSFVAEFIVIITSQ---KSLVMRKTLITLVHGNWNHINSHLFIIYLT

Query:  PDVLWIQ
         DVLWIQ
Subjt:  PDVLWIQ

A0A650F2C7 NADH-plastoquinone oxidoreductase subunit 48.7e-3342.86Show/hide
Query:  CGTGNNIQ---------SISDFLLLLLLNHRLYPVPRGTLEYLYASSRNLIQNGSIWIGSDQYG-LPPRPFSFFTLVDHSRHNSNNLCSFN-SGQGNFKT
        CGTGNNI           I+D+ L  ++        RGTL+YLYA SRNLI+NGS+WIGS+ YG + PR FS F+LV+  R NSNNLCSFN S    FK 
Subjt:  CGTGNNIQ---------SISDFLLLLLLNHRLYPVPRGTLEYLYASSRNLIQNGSIWIGSDQYG-LPPRPFSFFTLVDHSRHNSNNLCSFN-SGQGNFKT

Query:  KNSLFLR-----------------TEWSYLTNNLSWISWRCPFLFFLAGTSYDRILL------------VYLDEMGYLIDGASLALPGMSSF---VAEFI
        KNSLFLR                 T+ S+ TNN SWI W C F        Y+  LL              +    YLIDG S  + G   F   +  F 
Subjt:  KNSLFLR-----------------TEWSYLTNNLSWISWRCPFLFFLAGTSYDRILL------------VYLDEMGYLIDGASLALPGMSSF---VAEFI

Query:  VIITSQKSLVMRKTLITLVHGNWNHINSHLFIIYLTPDVLWIQAF
              K     K      +GNWN INS+LFIIY+TPDVLWIQ F
Subjt:  VIITSQKSLVMRKTLITLVHGNWNHINSHLFIIYLTPDVLWIQAF

A0A6H1XID1 NADH-plastoquinone oxidoreductase subunit 43.1e-1449.21Show/hide
Query:  LFFLAGTSYDRILLVYLDEMGYL-------------IDGASLALPGMSSFVAEFIV---IITSQKSLVMRKTLIT-------------------------
        LFFL GTS DRI LVYLDEMG +                AS+ALPGMS FVAE +V   IITS K L+M K LIT                         
Subjt:  LFFLAGTSYDRILLVYLDEMGYL-------------IDGASLALPGMSSFVAEFIV---IITSQKSLVMRKTLIT-------------------------

Query:  LVHGNWNHINSHLFIIYLTPDVLWIQ
        L +GNWN INS+LFIIY+T DVLWIQ
Subjt:  LVHGNWNHINSHLFIIYLTPDVLWIQ

SwissProt top hitse value%identityAlignment
B1A984 NAD(P)H-quinone oxidoreductase chain 4, chloroplastic1.8e-1161.04Show/hide
Query:  LFFLAGTSYDRILLVYLDEMG-------------YLIDGASLALPGMSSFVAEFIV---IITSQKSLVMRKTLITLV
        LFFLAGTSYDRI LVYLDEMG              ++  ASLALPGMS FVAE IV   IITSQK  +M K LIT V
Subjt:  LFFLAGTSYDRILLVYLDEMG-------------YLIDGASLALPGMSSFVAEFIV---IITSQKSLVMRKTLITLV

Q09WW8 NAD(P)H-quinone oxidoreductase chain 4, chloroplastic2.4e-1159.74Show/hide
Query:  LFFLAGTSYDRILLVYLDEMG-------------YLIDGASLALPGMSSFVAEFIV---IITSQKSLVMRKTLITLV
        LFFLAGTSYDRI LVYLDEMG              ++  ASLALPGMS FVAE I+   I+TSQK L+M K LIT V
Subjt:  LFFLAGTSYDRILLVYLDEMG-------------YLIDGASLALPGMSSFVAEFIV---IITSQKSLVMRKTLITLV

Q0ZIW8 NAD(P)H-quinone oxidoreductase chain 4, chloroplastic1.1e-1161.04Show/hide
Query:  LFFLAGTSYDRILLVYLDEMG-------------YLIDGASLALPGMSSFVAEFIV---IITSQKSLVMRKTLITLV
        LFFLAGTSYDRI L+YLDEMG              ++  ASLALPGMS FVAE IV   IITSQK L+M K LIT V
Subjt:  LFFLAGTSYDRILLVYLDEMG-------------YLIDGASLALPGMSSFVAEFIV---IITSQKSLVMRKTLITLV

Q4VZL8 NAD(P)H-quinone oxidoreductase chain 4, chloroplastic3.7e-1263.64Show/hide
Query:  LFFLAGTSYDRILLVYLDEMGYL-------------IDGASLALPGMSSFVAEFIV---IITSQKSLVMRKTLITLV
        LFFLAGTSYDRI LVYLDEMG L             +  ASLALPGMS FVAE IV   IITSQK L+M K +ITLV
Subjt:  LFFLAGTSYDRILLVYLDEMGYL-------------IDGASLALPGMSSFVAEFIV---IITSQKSLVMRKTLITLV

Q68RV6 NAD(P)H-quinone oxidoreductase chain 4, chloroplastic1.8e-1162.34Show/hide
Query:  LFFLAGTSYDRILLVYLDEMGYL-------------IDGASLALPGMSSFVAEFIV---IITSQKSLVMRKTLITLV
        LFFLAGTSYDRI LVYLDEMG +                ASLALPGMS FVAE IV   IITSQK L+M K LIT V
Subjt:  LFFLAGTSYDRILLVYLDEMGYL-------------IDGASLALPGMSSFVAEFIV---IITSQKSLVMRKTLITLV

Arabidopsis top hitse value%identityAlignment
ATCG01050.1 NADH-Ubiquinone/plastoquinone (complex I) protein1.4e-1157.14Show/hide
Query:  LFFLAGTSYDRILLVYLDEMG-------------YLIDGASLALPGMSSFVAEFIV---IITSQKSLVMRKTLITLV
        LFFLAGTSYDRI LVYLDEMG              ++  ASLALPGMS F+AEFIV   IITSQK  ++ K  I  V
Subjt:  LFFLAGTSYDRILLVYLDEMG-------------YLIDGASLALPGMSSFVAEFIV---IITSQKSLVMRKTLITLV

ATCG01060.1 iron-sulfur cluster binding;electron carriers;4 iron, 4 sulfur cluster binding6.2e-0761.9Show/hide
Query:  GCTQCLRACPT--LQMRPWGRCKAKQIASALQEEKTVLVSKC
        GCTQC+RACPT  L+M PW  CKAKQIASA + E  V   +C
Subjt:  GCTQCLRACPT--LQMRPWGRCKAKQIASALQEEKTVLVSKC


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGAACTCGATAAACTGGAGGATGATTCTCGGGTTGAACTAGGTAAGCTAGATGGGATGAGAAGAAGGTCAAGCTACGCTCCTTTTCCTATGGCTATGGATTCTTTGTC
CTCTCGCAACTTACTTACTCATTCACCTGTCTATCGGTCTCACTCGCTCCTTCACCTCGGTCGGCTTCTTTCTCTTCTCCTGACCCTGATTGAATTGACCAAGATACGTA
ATGGGTGTACTCAATGTCTCCGAGCTTGCCCCACATTACAAATGAGACCTTGGGGCAGATGTAAAGCTAAGCAAATAGCTTCGGCTCTACAAGAAGAGAAGACTGTCTTG
GTTTCCAAGTGTCTCTTGGTTAAGAAGAGTTGTAGTTTTGCCAATATTTGCGGCACTGGAAATAATATTCAATCTATATCGGATTTCTTATTGCTTTTGCTATTAAATCA
CCGATTATACCCTGTACCCAGAGGCACATTAGAGTACTTGTATGCTTCGAGCCGGAATCTTATTCAAAATGGGAGCATATGGATTGGTTCGGATCAATATGGATTACCCC
CCCGCCCATTCTCTTTTTTCACCTTGGTTGATCATAGTAGGCATAATTCAAATAATCTATGCAGCTTCAACTCGGGTCAAGGCAATTTCAAAACAAAGAATAGCTTATTC
CTCCGGACTGAATGGAGCTATTTGACAAATAATCTCTCATGGATTTCTTGGCGCTGCCCTTTTCTTTTCTTCTTGGCGGGAACAAGTTATGATAGAATACTTCTTGTTTA
TCTCGATGAAATGGGGTATCTTATCGATGGGGCTTCCCTTGCATTGCCGGGTATGAGCAGTTTTGTTGCAGAATTCATAGTCATAATTACCAGCCAAAAATCTCTTGTAA
TGAGAAAAACACTAATTACTTTGGTACATGGCAATTGGAATCATATTAACTCCCATTTATTTATTATCTATCTTACGCCAGATGTTCTATGGATACAAGCTTTTTAA
mRNA sequenceShow/hide mRNA sequence
ATGGAACTCGATAAACTGGAGGATGATTCTCGGGTTGAACTAGGTAAGCTAGATGGGATGAGAAGAAGGTCAAGCTACGCTCCTTTTCCTATGGCTATGGATTCTTTGTC
CTCTCGCAACTTACTTACTCATTCACCTGTCTATCGGTCTCACTCGCTCCTTCACCTCGGTCGGCTTCTTTCTCTTCTCCTGACCCTGATTGAATTGACCAAGATACGTA
ATGGGTGTACTCAATGTCTCCGAGCTTGCCCCACATTACAAATGAGACCTTGGGGCAGATGTAAAGCTAAGCAAATAGCTTCGGCTCTACAAGAAGAGAAGACTGTCTTG
GTTTCCAAGTGTCTCTTGGTTAAGAAGAGTTGTAGTTTTGCCAATATTTGCGGCACTGGAAATAATATTCAATCTATATCGGATTTCTTATTGCTTTTGCTATTAAATCA
CCGATTATACCCTGTACCCAGAGGCACATTAGAGTACTTGTATGCTTCGAGCCGGAATCTTATTCAAAATGGGAGCATATGGATTGGTTCGGATCAATATGGATTACCCC
CCCGCCCATTCTCTTTTTTCACCTTGGTTGATCATAGTAGGCATAATTCAAATAATCTATGCAGCTTCAACTCGGGTCAAGGCAATTTCAAAACAAAGAATAGCTTATTC
CTCCGGACTGAATGGAGCTATTTGACAAATAATCTCTCATGGATTTCTTGGCGCTGCCCTTTTCTTTTCTTCTTGGCGGGAACAAGTTATGATAGAATACTTCTTGTTTA
TCTCGATGAAATGGGGTATCTTATCGATGGGGCTTCCCTTGCATTGCCGGGTATGAGCAGTTTTGTTGCAGAATTCATAGTCATAATTACCAGCCAAAAATCTCTTGTAA
TGAGAAAAACACTAATTACTTTGGTACATGGCAATTGGAATCATATTAACTCCCATTTATTTATTATCTATCTTACGCCAGATGTTCTATGGATACAAGCTTTTTAA
Protein sequenceShow/hide protein sequence
MELDKLEDDSRVELGKLDGMRRRSSYAPFPMAMDSLSSRNLLTHSPVYRSHSLLHLGRLLSLLLTLIELTKIRNGCTQCLRACPTLQMRPWGRCKAKQIASALQEEKTVL
VSKCLLVKKSCSFANICGTGNNIQSISDFLLLLLLNHRLYPVPRGTLEYLYASSRNLIQNGSIWIGSDQYGLPPRPFSFFTLVDHSRHNSNNLCSFNSGQGNFKTKNSLF
LRTEWSYLTNNLSWISWRCPFLFFLAGTSYDRILLVYLDEMGYLIDGASLALPGMSSFVAEFIVIITSQKSLVMRKTLITLVHGNWNHINSHLFIIYLTPDVLWIQAF