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CmoCh12G007760 (gene) of Cucurbita moschata (Rifu) v1 genome

Gene IDCmoCh12G007760
OrganismCucurbita moschata Rifu (Cucurbita moschata (Rifu) v1)
DescriptionRibosomal protein S12
Genome locationCmo_Chr12:6188537..6188964
RNA-Seq ExpressionCmoCh12G007760
SyntenyCmoCh12G007760
Gene Ontology termsGO:0006412 - translation (biological process)
GO:0005739 - mitochondrion (cellular component)
GO:0015935 - small ribosomal subunit (cellular component)
GO:0016020 - membrane (cellular component)
GO:0003735 - structural constituent of ribosome (molecular function)
InterPro domainsIPR006032 - Ribosomal protein S12/S23
IPR012340 - Nucleic acid-binding, OB-fold


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG2611575.1 hypothetical protein PVAP13_4KG104120 [Panicum virgatum]6.3e-4384.68Show/hide
Query:  MVEKKNGARTILELRINVPRSKEYAPVFQREHRK--NLIQLHIAKVRLSNRHDIFAHIPGEGHNLQEHSMVLIRGGRVKDSLGVKSHCIRGVKDLLGIPN
        MVEKKNGART+LELRINVPRSKEYA VF+REHRK  N     IAKVRLSNRHDIFAHIPGEGHN QEHS+VL+RGGRVKDS GVKSH IRGVKDLLGIP+
Subjt:  MVEKKNGARTILELRINVPRSKEYAPVFQREHRK--NLIQLHIAKVRLSNRHDIFAHIPGEGHNLQEHSMVLIRGGRVKDSLGVKSHCIRGVKDLLGIPN

Query:  RRRGRSKYGAE
        RR+GRSKYGAE
Subjt:  RRRGRSKYGAE

MQL98210.1 hypothetical protein [Colocasia esculenta]2.6e-3679.09Show/hide
Query:  MVEKKNGARTILELRINVPRSKEYAPVFQREHRKNLIQLHIAKVRLSNRHDIFAHIPGEGHNLQEH-SMVLIRGGRVKDSLGVKSHCIRGVKDLLGIPNR
        MVEKKNGA+TILELRINVPRSKEYA V     + N     IAKVRLSNRHDIFAHIPGEGHN QEH  +VLI GGRVKDS GVKSHCIRGVKDL+GI +R
Subjt:  MVEKKNGARTILELRINVPRSKEYAPVFQREHRKNLIQLHIAKVRLSNRHDIFAHIPGEGHNLQEH-SMVLIRGGRVKDSLGVKSHCIRGVKDLLGIPNR

Query:  RRGRSKYGAE
        RRGRSKYGAE
Subjt:  RRGRSKYGAE

PHU28620.1 Ribosomal protein S12, mitochondrial [Capsicum chinense]1.0e-2970.87Show/hide
Query:  IAKVRLSNRHDIFAHIPGEGHNLQEHSMVLIRGGRVKDSLGVKSHCIRGVKDLLGIPNRRRGRSKYGAE--------------NLNRYEWKMPLPLLFLE
        IA+VRLSNRHDIFAHIP EGHNLQEHSMVLIRGGRVKDS GVK HCIRGVKDLLGIP+RRR  S+   E              N NRYEWKMPL LLFL 
Subjt:  IAKVRLSNRHDIFAHIPGEGHNLQEHSMVLIRGGRVKDSLGVKSHCIRGVKDLLGIPNRRRGRSKYGAE--------------NLNRYEWKMPLPLLFLE

Query:  QSR
        + R
Subjt:  QSR

QVJ97865.1 ribosomal protein S12 [Apium graveolens]1.4e-2997.1Show/hide
Query:  IAKVRLSNRHDIFAHIPGEGHNLQEHSMVLIRGGRVKDSLGVKSHCIRGVKDLLGIPNRRRGRSKYGAE
        IAKVRLSNRHDIFAHIPGEGHNLQEHSMVLIRGGRVKDS GVKSHCIRGVKDLLGIP+RRRGRSKYGAE
Subjt:  IAKVRLSNRHDIFAHIPGEGHNLQEHSMVLIRGGRVKDSLGVKSHCIRGVKDLLGIPNRRRGRSKYGAE

YP_010131399.1 ribosomal protein S12 [Aegiceras corniculatum]1.4e-2997.1Show/hide
Query:  IAKVRLSNRHDIFAHIPGEGHNLQEHSMVLIRGGRVKDSLGVKSHCIRGVKDLLGIPNRRRGRSKYGAE
        IAKVRLSNRHDIFAHIPGEGHNLQEHSMVLIRGGRVKDS GVKSHCIRGVKDLLGIP+RRRGRSKYGAE
Subjt:  IAKVRLSNRHDIFAHIPGEGHNLQEHSMVLIRGGRVKDSLGVKSHCIRGVKDLLGIPNRRRGRSKYGAE

TrEMBL top hitse value%identityAlignment
A0A2G3DCB7 30S ribosomal protein S12, chloroplastic5.0e-3070.87Show/hide
Query:  IAKVRLSNRHDIFAHIPGEGHNLQEHSMVLIRGGRVKDSLGVKSHCIRGVKDLLGIPNRRRGRSKYGAE--------------NLNRYEWKMPLPLLFLE
        IA+VRLSNRHDIFAHIP EGHNLQEHSMVLIRGGRVKDS GVK HCIRGVKDLLGIP+RRR  S+   E              N NRYEWKMPL LLFL 
Subjt:  IAKVRLSNRHDIFAHIPGEGHNLQEHSMVLIRGGRVKDSLGVKSHCIRGVKDLLGIPNRRRGRSKYGAE--------------NLNRYEWKMPLPLLFLE

Query:  QSR
        + R
Subjt:  QSR

A0A6B9MLS1 Ribosomal protein S126.6e-3097.1Show/hide
Query:  IAKVRLSNRHDIFAHIPGEGHNLQEHSMVLIRGGRVKDSLGVKSHCIRGVKDLLGIPNRRRGRSKYGAE
        IAKVRLSNRHDIFAHIPGEGHNLQEHSMVLIRGGRVKDS GVKSHCIRGVKDLLGIP+RRRGRSKYGAE
Subjt:  IAKVRLSNRHDIFAHIPGEGHNLQEHSMVLIRGGRVKDSLGVKSHCIRGVKDLLGIPNRRRGRSKYGAE

A0A7D6BYE6 Ribosomal protein S126.6e-3097.1Show/hide
Query:  IAKVRLSNRHDIFAHIPGEGHNLQEHSMVLIRGGRVKDSLGVKSHCIRGVKDLLGIPNRRRGRSKYGAE
        IAKVRLSNRHDIFAHIPGEGHNLQEHSMVLIRGGRVKDS GVKSHCIRGVKDLLGIP+RRRGRSKYGAE
Subjt:  IAKVRLSNRHDIFAHIPGEGHNLQEHSMVLIRGGRVKDSLGVKSHCIRGVKDLLGIPNRRRGRSKYGAE

A0A7G8P5I5 Ribosomal protein S126.6e-3097.1Show/hide
Query:  IAKVRLSNRHDIFAHIPGEGHNLQEHSMVLIRGGRVKDSLGVKSHCIRGVKDLLGIPNRRRGRSKYGAE
        IAKVRLSNRHDIFAHIPGEGHNLQEHSMVLIRGGRVKDS GVKSHCIRGVKDLLGIP+RRRGRSKYGAE
Subjt:  IAKVRLSNRHDIFAHIPGEGHNLQEHSMVLIRGGRVKDSLGVKSHCIRGVKDLLGIPNRRRGRSKYGAE

E9P2B5 Ribosomal protein S126.6e-3097.1Show/hide
Query:  IAKVRLSNRHDIFAHIPGEGHNLQEHSMVLIRGGRVKDSLGVKSHCIRGVKDLLGIPNRRRGRSKYGAE
        IAKVRLSNRHDIFAHIPGEGHNLQEHSMVLIRGGRVKDS GVKSHCIRGVKDLLGIP+RRRGRSKYGAE
Subjt:  IAKVRLSNRHDIFAHIPGEGHNLQEHSMVLIRGGRVKDSLGVKSHCIRGVKDLLGIPNRRRGRSKYGAE

SwissProt top hitse value%identityAlignment
P27070 Ribosomal protein S12, mitochondrial7.5e-3192.75Show/hide
Query:  IAKVRLSNRHDIFAHIPGEGHNLQEHSMVLIRGGRVKDSLGVKSHCIRGVKDLLGIPNRRRGRSKYGAE
        IAKVRL+NRHDIF HIPGEGHN QEHSMVLIRGGRVKDS GVKSHCIRGVKDLLGIP+RRRGRSKYGAE
Subjt:  IAKVRLSNRHDIFAHIPGEGHNLQEHSMVLIRGGRVKDSLGVKSHCIRGVKDLLGIPNRRRGRSKYGAE

P60096 Ribosomal protein S12, mitochondrial2.2e-3094.2Show/hide
Query:  IAKVRLSNRHDIFAHIPGEGHNLQEHSMVLIRGGRVKDSLGVKSHCIRGVKDLLGIPNRRRGRSKYGAE
        IAKVRLSNRHDIFAHIPGEGHN QEH MVLIRGGRVKDS GVKSH IRGVKDLLGIPNRRRGRSKYGAE
Subjt:  IAKVRLSNRHDIFAHIPGEGHNLQEHSMVLIRGGRVKDSLGVKSHCIRGVKDLLGIPNRRRGRSKYGAE

P68535 Ribosomal protein S12, mitochondrial1.8e-3297.1Show/hide
Query:  IAKVRLSNRHDIFAHIPGEGHNLQEHSMVLIRGGRVKDSLGVKSHCIRGVKDLLGIPNRRRGRSKYGAE
        IAKVRLSNRHDIFAHIPGEGHNLQEHSMVLIRGGRVKDS GVKSHCIRGVKDLLGIP+RRRGRSKYGAE
Subjt:  IAKVRLSNRHDIFAHIPGEGHNLQEHSMVLIRGGRVKDSLGVKSHCIRGVKDLLGIPNRRRGRSKYGAE

P68536 Ribosomal protein S12, mitochondrial1.8e-3297.1Show/hide
Query:  IAKVRLSNRHDIFAHIPGEGHNLQEHSMVLIRGGRVKDSLGVKSHCIRGVKDLLGIPNRRRGRSKYGAE
        IAKVRLSNRHDIFAHIPGEGHNLQEHSMVLIRGGRVKDS GVKSHCIRGVKDLLGIP+RRRGRSKYGAE
Subjt:  IAKVRLSNRHDIFAHIPGEGHNLQEHSMVLIRGGRVKDSLGVKSHCIRGVKDLLGIPNRRRGRSKYGAE

Q95869 Ribosomal protein S12, mitochondrial4.4e-3194.2Show/hide
Query:  IAKVRLSNRHDIFAHIPGEGHNLQEHSMVLIRGGRVKDSLGVKSHCIRGVKDLLGIPNRRRGRSKYGAE
        IAKVRLSNRHDIFAHIPGEGHN QEHSMVLIRGGRVKDS GVK HCIRGVKDLLGIP+RRRGRSKYGAE
Subjt:  IAKVRLSNRHDIFAHIPGEGHNLQEHSMVLIRGGRVKDSLGVKSHCIRGVKDLLGIPNRRRGRSKYGAE

Arabidopsis top hitse value%identityAlignment
AT2G07675.1 Ribosomal protein S12/S23 family protein7.0e-3292.75Show/hide
Query:  IAKVRLSNRHDIFAHIPGEGHNLQEHSMVLIRGGRVKDSLGVKSHCIRGVKDLLGIPNRRRGRSKYGAE
        IAKVRLSNRHDIFAHIPGEGHN QEHS VLIRGGRVKDS GVKSHCIRGVKDL+GIP RRRGRSKYGAE
Subjt:  IAKVRLSNRHDIFAHIPGEGHNLQEHSMVLIRGGRVKDSLGVKSHCIRGVKDLLGIPNRRRGRSKYGAE

ATCG00065.1 ribosomal protein S12A1.2e-1857.97Show/hide
Query:  IAKVRLSNRHDIFAHIPGEGHNLQEHSMVLIRGGRVKDSLGVKSHCIRGVKDLLGIPNRRRGRSKYGAE
        +A+VRL++  +I A+IPG GHNLQEHS+VL+RGGRVKD  GV+ H +RG  D +G+ +R++GRSKYG +
Subjt:  IAKVRLSNRHDIFAHIPGEGHNLQEHSMVLIRGGRVKDSLGVKSHCIRGVKDLLGIPNRRRGRSKYGAE

ATCG00905.1 ribosomal protein S12C1.2e-1857.97Show/hide
Query:  IAKVRLSNRHDIFAHIPGEGHNLQEHSMVLIRGGRVKDSLGVKSHCIRGVKDLLGIPNRRRGRSKYGAE
        +A+VRL++  +I A+IPG GHNLQEHS+VL+RGGRVKD  GV+ H +RG  D +G+ +R++GRSKYG +
Subjt:  IAKVRLSNRHDIFAHIPGEGHNLQEHSMVLIRGGRVKDSLGVKSHCIRGVKDLLGIPNRRRGRSKYGAE

ATCG01230.1 ribosomal protein S12B1.2e-1857.97Show/hide
Query:  IAKVRLSNRHDIFAHIPGEGHNLQEHSMVLIRGGRVKDSLGVKSHCIRGVKDLLGIPNRRRGRSKYGAE
        +A+VRL++  +I A+IPG GHNLQEHS+VL+RGGRVKD  GV+ H +RG  D +G+ +R++GRSKYG +
Subjt:  IAKVRLSNRHDIFAHIPGEGHNLQEHSMVLIRGGRVKDSLGVKSHCIRGVKDLLGIPNRRRGRSKYGAE

ATMG00980.1 Ribosomal protein S12/S23 family protein7.0e-3292.75Show/hide
Query:  IAKVRLSNRHDIFAHIPGEGHNLQEHSMVLIRGGRVKDSLGVKSHCIRGVKDLLGIPNRRRGRSKYGAE
        IAKVRLSNRHDIFAHIPGEGHN QEHS VLIRGGRVKDS GVKSHCIRGVKDL+GIP RRRGRSKYGAE
Subjt:  IAKVRLSNRHDIFAHIPGEGHNLQEHSMVLIRGGRVKDSLGVKSHCIRGVKDLLGIPNRRRGRSKYGAE


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGTAGAGAAGAAAAACGGCGCACGGACCATACTCGAGCTTCGGATCAATGTCCCTAGAAGCAAGGAATACGCCCCCGTCTTTCAACGAGAACACCGAAAAAACCTAAT
TCAGCTCCATATAGCCAAAGTACGGTTGAGCAATCGACATGATATATTTGCTCACATTCCAGGCGAAGGTCATAATTTGCAGGAACATTCTATGGTCTTAATAAGAGGAG
GTAGAGTGAAAGATTCGCTAGGTGTGAAATCCCATTGTATTCGAGGAGTCAAGGATTTGCTGGGAATTCCGAATCGAAGAAGAGGAAGATCTAAATATGGTGCAGAAAAC
CTAAATCGATATGAATGGAAGATGCCTCTTCCACTTCTTTTTCTCGAGCAGTCGAGGGAAAGGGAACAACCACAATGTTACACCCCAAAATAG
mRNA sequenceShow/hide mRNA sequence
ATGGTAGAGAAGAAAAACGGCGCACGGACCATACTCGAGCTTCGGATCAATGTCCCTAGAAGCAAGGAATACGCCCCCGTCTTTCAACGAGAACACCGAAAAAACCTAAT
TCAGCTCCATATAGCCAAAGTACGGTTGAGCAATCGACATGATATATTTGCTCACATTCCAGGCGAAGGTCATAATTTGCAGGAACATTCTATGGTCTTAATAAGAGGAG
GTAGAGTGAAAGATTCGCTAGGTGTGAAATCCCATTGTATTCGAGGAGTCAAGGATTTGCTGGGAATTCCGAATCGAAGAAGAGGAAGATCTAAATATGGTGCAGAAAAC
CTAAATCGATATGAATGGAAGATGCCTCTTCCACTTCTTTTTCTCGAGCAGTCGAGGGAAAGGGAACAACCACAATGTTACACCCCAAAATAG
Protein sequenceShow/hide protein sequence
MVEKKNGARTILELRINVPRSKEYAPVFQREHRKNLIQLHIAKVRLSNRHDIFAHIPGEGHNLQEHSMVLIRGGRVKDSLGVKSHCIRGVKDLLGIPNRRRGRSKYGAEN
LNRYEWKMPLPLLFLEQSREREQPQCYTPK