CuGenDBv2

Gene ID	CmoCh12G007770
Organism	Cucurbita moschata Rifu (Cucurbita moschata (Rifu) v1)
Description	NAD(P)H-quinone oxidoreductase subunit H, chloroplastic
Genome location	Cmo_Chr12:6268233..6276986
RNA-Seq Expression	CmoCh12G007770
Synteny	CmoCh12G007770
Gene Ontology terms	GO:0005622 - intracellular (cellular component) GO:0016651 - oxidoreductase activity, acting on NAD(P)H (molecular function)
InterPro domains	IPR022885 - NAD(P)H-quinone oxidoreductase subunit D/H IPR029014 - [NiFe]-hydrogenase, large subunit

Homology

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GenBank top hits

e value

%identity

Alignment

QYK19769.1 NADH-plastoquinone oxidoreductase subunit 7 [Blumea balsamifera]

6.6e-16

53.41

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Query:  LPHGWIDKCLDLCNSFLTALAEYQTLITQNP-----------------------RPIVLASGIPWDLRQVHHLESYDEFDWEVILKKE
        LPHGWIDKCLD C+ FLT +AEYQ LIT+NP                        P++ ASGIPWDLR+V H E YDEFDWEV  +KE
Subjt:  LPHGWIDKCLDLCNSFLTALAEYQTLITQNP-----------------------RPIVLASGIPWDLRQVHHLESYDEFDWEVILKKE

YP_009317442.1 NADH dehydrogenase subunit 7 [Coccinia grandis]

1.3e-16

54.55

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Query:  LPHGWIDKCLDLCNSFLTALAEYQTLITQNP-----------------------RPIVLASGIPWDLRQVHHLESYDEFDWEVILKKE
        LPHGWIDKCLD C+ FLTA+AEYQ LITQNP                        P++ ASGIPWDLR++ H E YDEFDWEV  +KE
Subjt:  LPHGWIDKCLDLCNSFLTALAEYQTLITQNP-----------------------RPIVLASGIPWDLRQVHHLESYDEFDWEVILKKE

YP_009326046.1 NADH dehydrogenase subunit 7 [Citrullus lanatus]

1.0e-16

55.68

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Query:  LPHGWIDKCLDLCNSFLTALAEYQTLITQNP-----------------------RPIVLASGIPWDLRQVHHLESYDEFDWEVILKKE
        LPHGWIDKCLD C+ FLTA+AEYQ LITQNP                        P++ ASGIPWDLR+V H E YDEFDWEV  +KE
Subjt:  LPHGWIDKCLDLCNSFLTALAEYQTLITQNP-----------------------RPIVLASGIPWDLRQVHHLESYDEFDWEVILKKE

YP_009420851.1 NADH dehydrogenase subunit 7 [Citrullus colocynthis]

1.0e-16

55.68

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Query:  LPHGWIDKCLDLCNSFLTALAEYQTLITQNP-----------------------RPIVLASGIPWDLRQVHHLESYDEFDWEVILKKE
        LPHGWIDKCLD C+ FLTA+AEYQ LITQNP                        P++ ASGIPWDLR+V H E YDEFDWEV  +KE
Subjt:  LPHGWIDKCLDLCNSFLTALAEYQTLITQNP-----------------------RPIVLASGIPWDLRQVHHLESYDEFDWEVILKKE

YP_010131142.1 NADH-plastoquinone oxidoreductase subunit 7 [Benincasa hispida]

1.0e-16

55.68

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Query:  LPHGWIDKCLDLCNSFLTALAEYQTLITQNP-----------------------RPIVLASGIPWDLRQVHHLESYDEFDWEVILKKE
        LPHGWIDKCLD C+ FLTA+AEYQ LITQNP                        P++ ASGIPWDLR+V H E YDEFDWEV  +KE
Subjt:  LPHGWIDKCLDLCNSFLTALAEYQTLITQNP-----------------------RPIVLASGIPWDLRQVHHLESYDEFDWEVILKKE

TrEMBL top hits

e value

%identity

Alignment

A0A1P8LE44 NADH-quinone oxidoreductase subunit D

5.0e-17

55.68

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Query:  LPHGWIDKCLDLCNSFLTALAEYQTLITQNP-----------------------RPIVLASGIPWDLRQVHHLESYDEFDWEVILKKE
        LPHGWIDKCLD C+ FLTA+AEYQ LITQNP                        P++ ASGIPWDLR+V H E YDEFDWEV  +KE
Subjt:  LPHGWIDKCLDLCNSFLTALAEYQTLITQNP-----------------------RPIVLASGIPWDLRQVHHLESYDEFDWEVILKKE

A0A1P8LEK8 NADH-quinone oxidoreductase subunit D

5.0e-17

55.68

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Query:  LPHGWIDKCLDLCNSFLTALAEYQTLITQNP-----------------------RPIVLASGIPWDLRQVHHLESYDEFDWEVILKKE
        LPHGWIDKCLD C+ FLTA+AEYQ LITQNP                        P++ ASGIPWDLR+V H E YDEFDWEV  +KE
Subjt:  LPHGWIDKCLDLCNSFLTALAEYQTLITQNP-----------------------RPIVLASGIPWDLRQVHHLESYDEFDWEVILKKE

A0A2I6C0C5 NAD(P)H-quinone oxidoreductase subunit H, chloroplastic

5.0e-17

55.68

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Query:  LPHGWIDKCLDLCNSFLTALAEYQTLITQNP-----------------------RPIVLASGIPWDLRQVHHLESYDEFDWEVILKKE
        LPHGWIDKCLD C+ FLTA+AEYQ LITQNP                        P++ ASGIPWDLR+V H E YDEFDWEV  +KE
Subjt:  LPHGWIDKCLDLCNSFLTALAEYQTLITQNP-----------------------RPIVLASGIPWDLRQVHHLESYDEFDWEVILKKE

A0A343A8G8 NAD(P)H-quinone oxidoreductase subunit H, chloroplastic

5.0e-17

55.68

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Query:  LPHGWIDKCLDLCNSFLTALAEYQTLITQNP-----------------------RPIVLASGIPWDLRQVHHLESYDEFDWEVILKKE
        LPHGWIDKCLD C+ FLTA+AEYQ LITQNP                        P++ ASGIPWDLR+V H E YDEFDWEV  +KE
Subjt:  LPHGWIDKCLDLCNSFLTALAEYQTLITQNP-----------------------RPIVLASGIPWDLRQVHHLESYDEFDWEVILKKE

A0A7T3QNM6 NADH-plastoquinone oxidoreductase subunit 7

5.0e-17

55.68

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Query:  LPHGWIDKCLDLCNSFLTALAEYQTLITQNP-----------------------RPIVLASGIPWDLRQVHHLESYDEFDWEVILKKE
        LPHGWIDKCLD C+ FLTA+AEYQ LITQNP                        P++ ASGIPWDLR+V H E YDEFDWEV  +KE
Subjt:  LPHGWIDKCLDLCNSFLTALAEYQTLITQNP-----------------------RPIVLASGIPWDLRQVHHLESYDEFDWEVILKKE

SwissProt top hits

e value

%identity

Alignment

A8SEG2 NAD(P)H-quinone oxidoreductase subunit H, chloroplastic

1.1e-18

52.27

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Query:  LPHGWIDKCLDLCNSFLTALAEYQTLITQNP-----------------------RPIVLASGIPWDLRQVHHLESYDEFDWEVILKKE
        LPHGWIDKCLD C+ FLT + EYQ LIT+NP                        P++ ASGIPWDLR+V H ESYDEFDWE+  +KE
Subjt:  LPHGWIDKCLDLCNSFLTALAEYQTLITQNP-----------------------RPIVLASGIPWDLRQVHHLESYDEFDWEVILKKE

B2LMP2 NAD(P)H-quinone oxidoreductase subunit H, chloroplastic

7.4e-18

52.27

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Query:  LPHGWIDKCLDLCNSFLTALAEYQTLITQNP-----------------------RPIVLASGIPWDLRQVHHLESYDEFDWEVILKKE
        LPHGWIDKCLD C+ FLT +AEYQ LIT+NP                        P++ ASGI WDLR+V H E YDEFDWEV  +KE
Subjt:  LPHGWIDKCLDLCNSFLTALAEYQTLITQNP-----------------------RPIVLASGIPWDLRQVHHLESYDEFDWEVILKKE

Q1KXQ9 NAD(P)H-quinone oxidoreductase subunit H, chloroplastic

7.4e-18

52.27

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Query:  LPHGWIDKCLDLCNSFLTALAEYQTLITQNP-----------------------RPIVLASGIPWDLRQVHHLESYDEFDWEVILKKE
        LPHGWIDKCLD C+ FLT +AEYQ LIT+NP                        P++ ASGI WDLR+V H E YDEFDWEV  +KE
Subjt:  LPHGWIDKCLDLCNSFLTALAEYQTLITQNP-----------------------RPIVLASGIPWDLRQVHHLESYDEFDWEVILKKE

Q4VZL2 NAD(P)H-quinone oxidoreductase subunit H, chloroplastic

1.1e-18

54.55

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Query:  LPHGWIDKCLDLCNSFLTALAEYQTLITQNP-----------------------RPIVLASGIPWDLRQVHHLESYDEFDWEVILKKE
        LPHGWIDKCLD C+ FLTA+AEYQ LITQNP                        P++ ASGIPWDLR+V   E YDEFDWEV  +KE
Subjt:  LPHGWIDKCLDLCNSFLTALAEYQTLITQNP-----------------------RPIVLASGIPWDLRQVHHLESYDEFDWEVILKKE

Q70XV8 NAD(P)H-quinone oxidoreductase subunit H, chloroplastic

7.4e-18

52.27

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Query:  LPHGWIDKCLDLCNSFLTALAEYQTLITQNP-----------------------RPIVLASGIPWDLRQVHHLESYDEFDWEVILKKE
        LPHGWIDKCLD C+ FL  +AEYQ LIT+NP                        P++ ASGIPWDLR+V H E YDEFDWEV  +KE
Subjt:  LPHGWIDKCLDLCNSFLTALAEYQTLITQNP-----------------------RPIVLASGIPWDLRQVHHLESYDEFDWEVILKKE

Arabidopsis top hits

e value

%identity

Alignment

ATCG01110.1 NAD(P)H dehydrogenase subunit H

3.8e-17

46.59

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Query:  LPHGWIDKCLDLCNSFLTALAEYQTLITQNP-----------------------RPIVLASGIPWDLRQVHHLESYDEFDWEVILKKE
        LP+GWIDKCLD C+ FLT + EYQ LIT+NP                        P++ ASGIPWDLR++   ESYDEF+WE+  +K+
Subjt:  LPHGWIDKCLDLCNSFLTALAEYQTLITQNP-----------------------RPIVLASGIPWDLRQVHHLESYDEFDWEVILKKE

Sequences

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CDS sequence

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ATGAACTCAGAATTTCTTCGCTTCGATTCCGCCCCTACTAAAATAAAAGGAAGGCTAGCTCCTACTCAAACTCCTTCTCCTCCTTCATCGTCGTTGACGAGAAAGCCCAA
CGATCCATTTATAGGAAATGCTACAACCCATTGTTCCTCTTTTGACGATGAACCACTCCGGTACAACAAGCTAAAGGGACCTCGAGTGCGTAGGGCCGATCCCCGTGTGC
TAGAGGGAAGACCGGAAAGTTTGTGTGAAGAGCAGAGAAAGAAAGCATTTGGTGTCCTTTTGGCCAGCCTGCTTAGCGACAGAGCCACCCTCTTTGGGGTCAGCAGTGAG
GAGGACAATCCCGTTTTTACTCCGGCGATTTCCTTAAAAATGGATGGATACTTATTGATCTTGACCTTTTATTCACTTGCATTTTCAGCAATTCATGGAAAGCGGAATCG
AGGAAAAACTGATAAATGGACCAGCTACAAGAAAAGACCTCATGATAGTCAATATGGGACCTCACCACCCATCAATGCACGTCGCGGTCTACCTCATGGATGGATAGATA
AATGTTTGGATTTATGCAATTCCTTTTTGACTGCCCTTGCTGAATATCAAACACTTATTACACAAAATCCTAGACCAATCGTCCTAGCTTCCGGAATACCATGGGATCTT
CGTCAAGTTCATCATCTTGAGTCTTATGACGAATTTGATTGGGAAGTTATATTAAAGAAGGAACAGGAGAAGGAATCTTTCTTACAGGAGGGAGTTAAAGAAGGTGAAGG
GGCAGAGAAGAGAGTAAAAGAGTTGTTACATCAGGGAAAGAACAGAGAAAGACAAGGACTAGAGGGGAAGGAAGGAGTTTACCAGTTACATCCGGGAAGGAATAGAGGTT
CTCAGGGGCGAAGACCTGAGACCCGTAGGGCGAAGAGGCGAAGACACTTAATCCTCGGAGAGTGCCACGGCCATACAAACATCATCCCAGAAGCAAATCCGCTTACCATC
TATTTACTATTCGTGTTTGAAGGGAAAGAACCAGAACTTAATTCAAGTCATAGAGTAGAGGTTCAAGGCAGAATTGTAAAGGAGCGAAGCAACTCTCCCGATAGGGAGAA
GAGCGAAGCAGAGGCAGGAGAGTATCAGAATAAAGAGGAGCGAAGCAATGAGACTCAAAAGAATAGTCTAGGACAGGACAGACGGAAGGAACCCATTTACCGAGTTCAAT
CACTAATAGGACAAGTTAAGGCAATGAGAAAGAAGAGAAGCCAGACAGTTAAAGAGGAGCCGCGCCCAAGCATAAAAGAAATAAGAAATGGTACTTACAGTCGAATGAAT
AAGGTCATTGAACAAGACAAGTTTAGGTTGCATGTAGAATCATTCAAGCTCGACATGATCAATCTTGCTTGTGGAGTGATTCGAATCTCAATCAAGTGTTCTTGTCTTGA
GATATTTGATCAACAAGAATCATTGAAGCTAGACATGATCGATCTTGCTTATGGAGTGATTCGAATCTCAAACAAAGGGGGAGAGGAAATTCAGCGACTGAACCATTACA
TAATGAGGGAAAAGAGAAGAAGATTGAAGAAGAAGAAAATGAAAGCCAAAGATCAAGTCAAGACTCTAAAGAAGAATTAG

mRNA sequence

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Protein sequence

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MNSEFLRFDSAPTKIKGRLAPTQTPSPPSSSLTRKPNDPFIGNATTHCSSFDDEPLRYNKLKGPRVRRADPRVLEGRPESLCEEQRKKAFGVLLASLLSDRATLFGVSSE
EDNPVFTPAISLKMDGYLLILTFYSLAFSAIHGKRNRGKTDKWTSYKKRPHDSQYGTSPPINARRGLPHGWIDKCLDLCNSFLTALAEYQTLITQNPRPIVLASGIPWDL
RQVHHLESYDEFDWEVILKKEQEKESFLQEGVKEGEGAEKRVKELLHQGKNRERQGLEGKEGVYQLHPGRNRGSQGRRPETRRAKRRRHLILGECHGHTNIIPEANPLTI
YLLFVFEGKEPELNSSHRVEVQGRIVKERSNSPDREKSEAEAGEYQNKEERSNETQKNSLGQDRRKEPIYRVQSLIGQVKAMRKKRSQTVKEEPRPSIKEIRNGTYSRMN
KVIEQDKFRLHVESFKLDMINLACGVIRISIKCSCLEIFDQQESLKLDMIDLAYGVIRISNKGGEEIQRLNHYIMREKRRRLKKKKMKAKDQVKTLKKN

CmoCh12G007770 (gene) of Cucurbita moschata (Rifu) v1 genome