CuGenDBv2

Gene ID	CmoCh12G007780
Organism	Cucurbita moschata Rifu (Cucurbita moschata (Rifu) v1)
Description	Cytochrome c oxidase subunit 1
Genome location	Cmo_Chr12:6283081..6283565
RNA-Seq Expression	CmoCh12G007780
Synteny	CmoCh12G007780
Gene Ontology terms	GO:0006119 - oxidative phosphorylation (biological process) GO:0015990 - electron transport coupled proton transport (biological process) GO:0022900 - electron transport chain (biological process) GO:0005743 - mitochondrial inner membrane (cellular component) GO:0016021 - integral component of membrane (cellular component) GO:0045277 - respiratory chain complex IV (cellular component) GO:0004129 - cytochrome-c oxidase activity (molecular function) GO:0020037 - heme binding (molecular function) GO:0046872 - metal ion binding (molecular function)
InterPro domains	IPR000883 - Cytochrome c oxidase subunit I IPR023616 - Cytochrome c oxidase-like, subunit I domain IPR036927 - Cytochrome c oxidase-like, subunit I superfamily

Homology

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GenBank top hits

e value

%identity

Alignment

ABY66669.1 cytochrome oxidase subunit I, partial [Staphylea trifolia]

1.3e-73

91.3

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Query:  MIGGSGNWSVSILIGALDMAFPRLNNISFWLLPPSLLLLLSSALVEVGSGTGWTVYPPLRGITSHSGGVVDSAISSLHLS------GSINFITTISNMRG
        MIGGSGNWSV ILIGA DMAFPRLNNISFWLLPPSLLLLLSSALVEVGSGTGWTVYPPL GITSHSGG VDSAISSLHLS      GSINFITTISNMRG
Subjt:  MIGGSGNWSVSILIGALDMAFPRLNNISFWLLPPSLLLLLSSALVEVGSGTGWTVYPPLRGITSHSGGVVDSAISSLHLS------GSINFITTISNMRG

Query:  PGMTMHRSPFFVWSVLVTAFPLLLSLPVLVGAITMLLTDQNFNTTFSDPVGGGDPILYQHL
        PGMTMHRSP FVWSVLVTAFPLLLSLPVL GAITMLLTD+NFNTTFSDP GGGDPILYQHL
Subjt:  PGMTMHRSPFFVWSVLVTAFPLLLSLPVLVGAITMLLTDQNFNTTFSDPVGGGDPILYQHL

CAA11312.1 cytochrome oxidase subunit I, partial [Brexia madagascariensis]

1.3e-73

91.3

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Query:  MIGGSGNWSVSILIGALDMAFPRLNNISFWLLPPSLLLLLSSALVEVGSGTGWTVYPPLRGITSHSGGVVDSAISSLHLS------GSINFITTISNMRG
        MIGGSGNWSV ILIGA DMAFPRLNNISFWLLPPSLLLLLSSALVEVGSGTGWTVYPPL GITSHSGG VDSAISSLHLS      GSINFITTISNMRG
Subjt:  MIGGSGNWSVSILIGALDMAFPRLNNISFWLLPPSLLLLLSSALVEVGSGTGWTVYPPLRGITSHSGGVVDSAISSLHLS------GSINFITTISNMRG

Query:  PGMTMHRSPFFVWSVLVTAFPLLLSLPVLVGAITMLLTDQNFNTTFSDPVGGGDPILYQHL
        PGMTMHRSP FVWSVLVTAFPLLLSLPVL GAITMLLTD+NFNTTFSDP GGGDPILYQHL
Subjt:  PGMTMHRSPFFVWSVLVTAFPLLLSLPVLVGAITMLLTDQNFNTTFSDPVGGGDPILYQHL

CAA11331.1 cytochrome c oxidase subunit I, partial [Catharanthus roseus]

1.3e-73

91.3

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Query:  MIGGSGNWSVSILIGALDMAFPRLNNISFWLLPPSLLLLLSSALVEVGSGTGWTVYPPLRGITSHSGGVVDSAISSLHLS------GSINFITTISNMRG
        MIGGSGNWSV ILIGA DMAFPRLNNISFWLLPPSLLLLLSSALVEVGSGTGWTVYPPL GITSHSGG VDSAISSLHLS      GSINFITTISNMRG
Subjt:  MIGGSGNWSVSILIGALDMAFPRLNNISFWLLPPSLLLLLSSALVEVGSGTGWTVYPPLRGITSHSGGVVDSAISSLHLS------GSINFITTISNMRG

Query:  PGMTMHRSPFFVWSVLVTAFPLLLSLPVLVGAITMLLTDQNFNTTFSDPVGGGDPILYQHL
        PGMTMHRSP FVWSVLVTAFPLLLSLPVL GAITMLLTD+NFNTTFSDP GGGDPILYQHL
Subjt:  PGMTMHRSPFFVWSVLVTAFPLLLSLPVLVGAITMLLTDQNFNTTFSDPVGGGDPILYQHL

QGW53582.1 cytochrome c oxidase subunit 1 [Peganum harmala]

1.3e-73

91.3

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Query:  MIGGSGNWSVSILIGALDMAFPRLNNISFWLLPPSLLLLLSSALVEVGSGTGWTVYPPLRGITSHSGGVVDSAISSLHLS------GSINFITTISNMRG
        MIGGSGNWSV ILIGA DMAFPRLNNISFWLLPPSLLLLLSSALVEVGSGTGWTVYPPL GITSHSGG VDSAISSLHLS      GSINFITTISNMRG
Subjt:  MIGGSGNWSVSILIGALDMAFPRLNNISFWLLPPSLLLLLSSALVEVGSGTGWTVYPPLRGITSHSGGVVDSAISSLHLS------GSINFITTISNMRG

Query:  PGMTMHRSPFFVWSVLVTAFPLLLSLPVLVGAITMLLTDQNFNTTFSDPVGGGDPILYQHL
        PGMTMHRSP FVWSVLVTAFPLLLSLPVL GAITMLLTD+NFNTTFSDP GGGDPILYQHL
Subjt:  PGMTMHRSPFFVWSVLVTAFPLLLSLPVLVGAITMLLTDQNFNTTFSDPVGGGDPILYQHL

QHD18567.1 cytochrome c oxidase subunit 1 [Xanthoceras sorbifolium]

1.3e-73

91.3

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Query:  MIGGSGNWSVSILIGALDMAFPRLNNISFWLLPPSLLLLLSSALVEVGSGTGWTVYPPLRGITSHSGGVVDSAISSLHLS------GSINFITTISNMRG
        MIGGSGNWSV ILIGA DMAFPRLNNISFWLLPPSLLLLLSSALVEVGSGTGWTVYPPL GITSHSGG VDSAISSLHLS      GSINFITTISNMRG
Subjt:  MIGGSGNWSVSILIGALDMAFPRLNNISFWLLPPSLLLLLSSALVEVGSGTGWTVYPPLRGITSHSGGVVDSAISSLHLS------GSINFITTISNMRG

Query:  PGMTMHRSPFFVWSVLVTAFPLLLSLPVLVGAITMLLTDQNFNTTFSDPVGGGDPILYQHL
        PGMTMHRSP FVWSVLVTAFPLLLSLPVL GAITMLLTD+NFNTTFSDP GGGDPILYQHL
Subjt:  PGMTMHRSPFFVWSVLVTAFPLLLSLPVLVGAITMLLTDQNFNTTFSDPVGGGDPILYQHL

TrEMBL top hits

e value

%identity

Alignment

A0A2H5QV99 Cytochrome c oxidase subunit 1

6.3e-74

91.3

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Query:  MIGGSGNWSVSILIGALDMAFPRLNNISFWLLPPSLLLLLSSALVEVGSGTGWTVYPPLRGITSHSGGVVDSAISSLHLS------GSINFITTISNMRG
        MIGGSGNWSV ILIGA DMAFPRLNNISFWLLPPSLLLLLSSALVEVGSGTGWTVYPPL GITSHSGG VDSAISSLHLS      GSINFITTISNMRG
Subjt:  MIGGSGNWSVSILIGALDMAFPRLNNISFWLLPPSLLLLLSSALVEVGSGTGWTVYPPLRGITSHSGGVVDSAISSLHLS------GSINFITTISNMRG

Query:  PGMTMHRSPFFVWSVLVTAFPLLLSLPVLVGAITMLLTDQNFNTTFSDPVGGGDPILYQHL
        PGMTMHRSP FVWSVLVTAFPLLLSLPVL GAITMLLTD+NFNTTFSDP GGGDPILYQHL
Subjt:  PGMTMHRSPFFVWSVLVTAFPLLLSLPVLVGAITMLLTDQNFNTTFSDPVGGGDPILYQHL

A0A5C7GPE7 Cytochrome c oxidase subunit 1

6.3e-74

91.3

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Query:  MIGGSGNWSVSILIGALDMAFPRLNNISFWLLPPSLLLLLSSALVEVGSGTGWTVYPPLRGITSHSGGVVDSAISSLHLS------GSINFITTISNMRG
        MIGGSGNWSV ILIGA DMAFPRLNNISFWLLPPSLLLLLSSALVEVGSGTGWTVYPPL GITSHSGG VDSAISSLHLS      GSINFITTISNMRG
Subjt:  MIGGSGNWSVSILIGALDMAFPRLNNISFWLLPPSLLLLLSSALVEVGSGTGWTVYPPLRGITSHSGGVVDSAISSLHLS------GSINFITTISNMRG

Query:  PGMTMHRSPFFVWSVLVTAFPLLLSLPVLVGAITMLLTDQNFNTTFSDPVGGGDPILYQHL
        PGMTMHRSP FVWSVLVTAFPLLLSLPVL GAITMLLTD+NFNTTFSDP GGGDPILYQHL
Subjt:  PGMTMHRSPFFVWSVLVTAFPLLLSLPVLVGAITMLLTDQNFNTTFSDPVGGGDPILYQHL

A0A7U0FVG3 Cytochrome c oxidase subunit I

6.3e-74

91.3

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Query:  MIGGSGNWSVSILIGALDMAFPRLNNISFWLLPPSLLLLLSSALVEVGSGTGWTVYPPLRGITSHSGGVVDSAISSLHLS------GSINFITTISNMRG
        MIGGSGNWSV ILIGA DMAFPRLNNISFWLLPPSLLLLLSSALVEVGSGTGWTVYPPL GITSHSGG VDSAISSLHLS      GSINFITTISNMRG
Subjt:  MIGGSGNWSVSILIGALDMAFPRLNNISFWLLPPSLLLLLSSALVEVGSGTGWTVYPPLRGITSHSGGVVDSAISSLHLS------GSINFITTISNMRG

Query:  PGMTMHRSPFFVWSVLVTAFPLLLSLPVLVGAITMLLTDQNFNTTFSDPVGGGDPILYQHL
        PGMTMHRSP FVWSVLVTAFPLLLSLPVL GAITMLLTD+NFNTTFSDP GGGDPILYQHL
Subjt:  PGMTMHRSPFFVWSVLVTAFPLLLSLPVLVGAITMLLTDQNFNTTFSDPVGGGDPILYQHL

B0FA77 Cytochrome c oxidase subunit 1 (Fragment)

6.3e-74

91.3

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Query:  MIGGSGNWSVSILIGALDMAFPRLNNISFWLLPPSLLLLLSSALVEVGSGTGWTVYPPLRGITSHSGGVVDSAISSLHLS------GSINFITTISNMRG
        MIGGSGNWSV ILIGA DMAFPRLNNISFWLLPPSLLLLLSSALVEVGSGTGWTVYPPL GITSHSGG VDSAISSLHLS      GSINFITTISNMRG
Subjt:  MIGGSGNWSVSILIGALDMAFPRLNNISFWLLPPSLLLLLSSALVEVGSGTGWTVYPPLRGITSHSGGVVDSAISSLHLS------GSINFITTISNMRG

Query:  PGMTMHRSPFFVWSVLVTAFPLLLSLPVLVGAITMLLTDQNFNTTFSDPVGGGDPILYQHL
        PGMTMHRSP FVWSVLVTAFPLLLSLPVL GAITMLLTD+NFNTTFSDP GGGDPILYQHL
Subjt:  PGMTMHRSPFFVWSVLVTAFPLLLSLPVLVGAITMLLTDQNFNTTFSDPVGGGDPILYQHL

O80001 Cytochrome c oxidase subunit 1 (Fragment)

6.3e-74

91.3

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Query:  MIGGSGNWSVSILIGALDMAFPRLNNISFWLLPPSLLLLLSSALVEVGSGTGWTVYPPLRGITSHSGGVVDSAISSLHLS------GSINFITTISNMRG
        MIGGSGNWSV ILIGA DMAFPRLNNISFWLLPPSLLLLLSSALVEVGSGTGWTVYPPL GITSHSGG VDSAISSLHLS      GSINFITTISNMRG
Subjt:  MIGGSGNWSVSILIGALDMAFPRLNNISFWLLPPSLLLLLSSALVEVGSGTGWTVYPPLRGITSHSGGVVDSAISSLHLS------GSINFITTISNMRG

Query:  PGMTMHRSPFFVWSVLVTAFPLLLSLPVLVGAITMLLTDQNFNTTFSDPVGGGDPILYQHL
        PGMTMHRSP FVWSVLVTAFPLLLSLPVL GAITMLLTD+NFNTTFSDP GGGDPILYQHL
Subjt:  PGMTMHRSPFFVWSVLVTAFPLLLSLPVLVGAITMLLTDQNFNTTFSDPVGGGDPILYQHL

SwissProt top hits

e value

%identity

Alignment

P07506 Cytochrome c oxidase subunit 1

1.1e-75

90.68

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Query:  MIGGSGNWSVSILIGALDMAFPRLNNISFWLLPPSLLLLLSSALVEVGSGTGWTVYPPLRGITSHSGGVVDSAISSLHLS------GSINFITTISNMRG
        MIGGSGNWSV ILIGA DMAFPRLNNISFWLLPPSLLLLLSSALVEVGSGTGWTVYPPL GITSHSGG VDSAISSLHLS      GSINFITTISNMRG
Subjt:  MIGGSGNWSVSILIGALDMAFPRLNNISFWLLPPSLLLLLSSALVEVGSGTGWTVYPPLRGITSHSGGVVDSAISSLHLS------GSINFITTISNMRG

Query:  PGMTMHRSPFFVWSVLVTAFPLLLSLPVLVGAITMLLTDQNFNTTFSDPVGGGDPILYQHL
        PGMTMHRSP FVWSV VTAFPLLLSLPVL GAITMLLTD+NFNTTFSDP GGGDPILYQHL
Subjt:  PGMTMHRSPFFVWSVLVTAFPLLLSLPVLVGAITMLLTDQNFNTTFSDPVGGGDPILYQHL

P08743 Cytochrome c oxidase subunit 1

1.2e-74

89.44

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Query:  MIGGSGNWSVSILIGALDMAFPRLNNISFWLLPPSLLLLLSSALVEVGSGTGWTVYPPLRGITSHSGGVVDSAISSLHLS------GSINFITTISNMRG
        MIGGSGNWSV ILIGA DMAFPRLNNISFWLLPPSLLLLLSSALVEVGSGTGWTVYPPL GITSHSGG VDSAISSLHLS      GSINFITTISNMRG
Subjt:  MIGGSGNWSVSILIGALDMAFPRLNNISFWLLPPSLLLLLSSALVEVGSGTGWTVYPPLRGITSHSGGVVDSAISSLHLS------GSINFITTISNMRG

Query:  PGMTMHRSPFFVWSVLVTAFPLLLSLPVLVGAITMLLTDQNFNTTFSDPVGGGDPILYQHL
         GMTMHRSP FVWSVL TAFP+LLSLPVL GAITMLLTD+NFNTTFSDP GGGDPILYQHL
Subjt:  PGMTMHRSPFFVWSVLVTAFPLLLSLPVLVGAITMLLTDQNFNTTFSDPVGGGDPILYQHL

P12786 Cytochrome c oxidase subunit 1

1.9e-75

90.06

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Query:  MIGGSGNWSVSILIGALDMAFPRLNNISFWLLPPSLLLLLSSALVEVGSGTGWTVYPPLRGITSHSGGVVDSAISSLHLS------GSINFITTISNMRG
        MIGGSGNWSV ILIGA DMAFPRLNNISFWLLPPSLLLLLSSALVEVGSGTGWTVYPPL GITSHSGG VDSAISSLHLS      GSINF+TTISNMRG
Subjt:  MIGGSGNWSVSILIGALDMAFPRLNNISFWLLPPSLLLLLSSALVEVGSGTGWTVYPPLRGITSHSGGVVDSAISSLHLS------GSINFITTISNMRG

Query:  PGMTMHRSPFFVWSVLVTAFPLLLSLPVLVGAITMLLTDQNFNTTFSDPVGGGDPILYQHL
        PGMTMHRSP FVWSV VTAFPLLLSLPVL GAITMLLTD+NFNTTFSDP GGGDPILYQHL
Subjt:  PGMTMHRSPFFVWSVLVTAFPLLLSLPVLVGAITMLLTDQNFNTTFSDPVGGGDPILYQHL

P60620 Cytochrome c oxidase subunit 1

1.8e-70

86.34

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Query:  MIGGSGNWSVSILIGALDMAFPRLNNISFWLLPPSLLLLLSSALVEVGSGTGWTVYPPLRGITSHSGGVVDSAISSLHLS------GSINFITTISNMRG
        MIGG GNW V ILIGA DMAFPRLNNISFWLLPPSLLLLLSSALVEVGSGTGWTVYPPL GITSHSGG VD AI SLHLS      GSINFITTI NMRG
Subjt:  MIGGSGNWSVSILIGALDMAFPRLNNISFWLLPPSLLLLLSSALVEVGSGTGWTVYPPLRGITSHSGGVVDSAISSLHLS------GSINFITTISNMRG

Query:  PGMTMHRSPFFVWSVLVTAFPLLLSLPVLVGAITMLLTDQNFNTTFSDPVGGGDPILYQHL
        PGMTMHR P FVWSVLVTAF LLLSLPVL GAITMLLTD+NFNTTF DP GGGDPILYQHL
Subjt:  PGMTMHRSPFFVWSVLVTAFPLLLSLPVLVGAITMLLTDQNFNTTFSDPVGGGDPILYQHL

P68540 Cytochrome c oxidase subunit 1

1.8e-70

86.34

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Query:  MIGGSGNWSVSILIGALDMAFPRLNNISFWLLPPSLLLLLSSALVEVGSGTGWTVYPPLRGITSHSGGVVDSAISSLHLS------GSINFITTISNMRG
        MIGG GNW V ILIGA DMAFPRLNNISFWLLPPSLLLLLSSALVEVGSGTGWTVYPPL GITSHSGG VD AI SLHLS      GSINFITTI NMRG
Subjt:  MIGGSGNWSVSILIGALDMAFPRLNNISFWLLPPSLLLLLSSALVEVGSGTGWTVYPPLRGITSHSGGVVDSAISSLHLS------GSINFITTISNMRG

Query:  PGMTMHRSPFFVWSVLVTAFPLLLSLPVLVGAITMLLTDQNFNTTFSDPVGGGDPILYQHL
        PGMTMHR P FVWSVLVTAF LLLSLPVL GAITMLLTD+NFNTTF DP GGGDPILYQHL
Subjt:  PGMTMHRSPFFVWSVLVTAFPLLLSLPVLVGAITMLLTDQNFNTTFSDPVGGGDPILYQHL

Arabidopsis top hits

e value

%identity

Alignment

ATMG01360.1 cytochrome oxidase

1.3e-71

86.34

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Query:  MIGGSGNWSVSILIGALDMAFPRLNNISFWLLPPSLLLLLSSALVEVGSGTGWTVYPPLRGITSHSGGVVDSAISSLHLS------GSINFITTISNMRG
        MIGG GNW V ILIGA DMAFPRLNNISFWLLPPSLLLLLSSALVEVGSGTGWTVYPPL GITSHSGG VD AI SLHLS      GSINFITTI NMRG
Subjt:  MIGGSGNWSVSILIGALDMAFPRLNNISFWLLPPSLLLLLSSALVEVGSGTGWTVYPPLRGITSHSGGVVDSAISSLHLS------GSINFITTISNMRG

Query:  PGMTMHRSPFFVWSVLVTAFPLLLSLPVLVGAITMLLTDQNFNTTFSDPVGGGDPILYQHL
        PGMTMHR P FVWSVLVTAF LLLSLPVL GAITMLLTD+NFNTTF DP GGGDPILYQHL
Subjt:  PGMTMHRSPFFVWSVLVTAFPLLLSLPVLVGAITMLLTDQNFNTTFSDPVGGGDPILYQHL

Sequences

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CDS sequence

Show/hide CDS sequence

ATGATAGGTGGGTCTGGTAATTGGTCTGTTTCGATTTTGATAGGTGCACTTGACATGGCATTTCCCCGATTAAATAATATTTCATTCTGGTTGTTGCCACCAAGTCTCTT
GCTCCTATTAAGCTCAGCCTTAGTAGAAGTTGGTAGCGGCACTGGGTGGACGGTCTATCCGCCCTTAAGAGGTATTACCAGCCATTCTGGAGGAGTAGTTGATTCAGCAA
TTTCTAGTCTTCATCTATCTGGTTCTATCAATTTTATAACGACTATTTCCAACATGCGTGGACCTGGAATGACTATGCATAGATCACCCTTCTTTGTCTGGTCTGTTCTA
GTGACAGCATTCCCACTTTTATTATCACTTCCGGTACTGGTAGGGGCTATTACCATGTTATTAACCGATCAAAACTTTAATACAACCTTTTCTGATCCCGTTGGAGGGGG
AGACCCCATATTATACCAACATCTCTAA

mRNA sequence

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Protein sequence

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MIGGSGNWSVSILIGALDMAFPRLNNISFWLLPPSLLLLLSSALVEVGSGTGWTVYPPLRGITSHSGGVVDSAISSLHLSGSINFITTISNMRGPGMTMHRSPFFVWSVL
VTAFPLLLSLPVLVGAITMLLTDQNFNTTFSDPVGGGDPILYQHL

CmoCh12G007780 (gene) of Cucurbita moschata (Rifu) v1 genome