CuGenDBv2

Gene ID	CmoCh12G007830
Organism	Cucurbita moschata Rifu (Cucurbita moschata (Rifu) v1)
Description	30S ribosomal protein S18, chloroplastic
Genome location	Cmo_Chr12:6364467..6368007
RNA-Seq Expression	CmoCh12G007830
Synteny	CmoCh12G007830
Gene Ontology terms	GO:0009536 - plastid (cellular component) GO:0003723 - RNA binding (molecular function)
InterPro domains	NA

Homology

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GenBank top hits

e value

%identity

Alignment

ALO22209.1 ribosomal protein S18 [Cucurbita foetidissima]

2.4e-25

73.27

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Query:  MDKSKRLLLKSKRSFRRRLPPIQSGDRIDYRNMSLIS--------------------------IAIKQARILSLLPFLNNEKQFERRASTAGTIGLRTRN
        MDKSKRLLLKSKRSFRRRLPPIQSGDRIDYRNMSLIS                           AIKQARILSLLPFLNNEKQFERRASTAGTIGLRTRN
Subjt:  MDKSKRLLLKSKRSFRRRLPPIQSGDRIDYRNMSLIS--------------------------IAIKQARILSLLPFLNNEKQFERRASTAGTIGLRTRN

Query:  K
        K
Subjt:  K

YP_009447472.1 ribosomal protein S18 [Cucurbita maxima]

6.3e-26

74.26

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Query:  MDKSKRLLLKSKRSFRRRLPPIQSGDRIDYRNMSLIS--------------------------IAIKQARILSLLPFLNNEKQFERRASTAGTIGLRTRN
        MDKSKRLLLKSKRSFRRRLPPIQSGDRIDYRNMSLIS                          IAIKQARILSLLPFLNNEKQFERRASTAGTIGLRTRN
Subjt:  MDKSKRLLLKSKRSFRRRLPPIQSGDRIDYRNMSLIS--------------------------IAIKQARILSLLPFLNNEKQFERRASTAGTIGLRTRN

Query:  K
        K
Subjt:  K

YP_009652764.1 ribosomal protein S18 [Buddleja colvilei]

2.8e-26

68.97

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Query:  RNRIFGIRN---KQTMDKSKRLLLKSKRSFRRRLPPIQSGDRIDYRNMSLIS--------------------------IAIKQARILSLLPFLNNEKQFE
        RNRIFGIRN   KQTMDKSKR  LKSKRSFRRRLPPIQSGDRIDYRNMSLIS                          IAIKQARILSLLPFLNNEKQFE
Subjt:  RNRIFGIRN---KQTMDKSKRLLLKSKRSFRRRLPPIQSGDRIDYRNMSLIS--------------------------IAIKQARILSLLPFLNNEKQFE

Query:  RRASTAGTIGLRTRNK
        R  STA T GLRTR K
Subjt:  RRASTAGTIGLRTRNK

YP_009652852.1 ribosomal protein S18 [Buddleja sessilifolia]

2.0e-24

67.26

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Query:  IFGIRN---KQTMDKSKRLLLKSKRSFRRRLPPIQSGDRIDYRNMSLIS--------------------------IAIKQARILSLLPFLNNEKQFERRA
        +FGIRN   KQTMDKSKR  LKSKRSFRRRLPPIQSGDRIDYRNMSLIS                          IAIKQARILSLLPFLNNEKQFER  
Subjt:  IFGIRN---KQTMDKSKRLLLKSKRSFRRRLPPIQSGDRIDYRNMSLIS--------------------------IAIKQARILSLLPFLNNEKQFERRA

Query:  STAGTIGLRTRNK
        STA T GLRTR K
Subjt:  STAGTIGLRTRNK

YP_010020929.1 ribosomal protein S18 [Gmelina hainanensis]

2.8e-26

69.03

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Query:  RNRIFGIRNKQTMDKSKRLLLKSKRSFRRRLPPIQSGDRIDYRNMSLIS--------------------------IAIKQARILSLLPFLNNEKQFERRA
        RNRIFG  NKQTMDKSKR LLKSKRSFRRRLPPIQSGD+IDYRNMSLIS                          IAIKQARILSLLPFLNNEKQFER  
Subjt:  RNRIFGIRNKQTMDKSKRLLLKSKRSFRRRLPPIQSGDRIDYRNMSLIS--------------------------IAIKQARILSLLPFLNNEKQFERRA

Query:  STAGTIGLRTRNK
        ST  T GLRTRNK
Subjt:  STAGTIGLRTRNK

TrEMBL top hits

e value

%identity

Alignment

A0A0S2IE53 Ribosomal protein S18

3.0e-26

74.26

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Query:  MDKSKRLLLKSKRSFRRRLPPIQSGDRIDYRNMSLIS--------------------------IAIKQARILSLLPFLNNEKQFERRASTAGTIGLRTRN
        MDKSKRLLLKSKRSFRRRLPPIQSGDRIDYRNMSLIS                          IAIKQARILSLLPFLNNEKQFERRASTAGTIGLRTRN
Subjt:  MDKSKRLLLKSKRSFRRRLPPIQSGDRIDYRNMSLIS--------------------------IAIKQARILSLLPFLNNEKQFERRASTAGTIGLRTRN

Query:  K
        K
Subjt:  K

A0A0S2IFH5 Ribosomal protein S18

3.0e-26

74.26

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Query:  MDKSKRLLLKSKRSFRRRLPPIQSGDRIDYRNMSLIS--------------------------IAIKQARILSLLPFLNNEKQFERRASTAGTIGLRTRN
        MDKSKRLLLKSKRSFRRRLPPIQSGDRIDYRNMSLIS                          IAIKQARILSLLPFLNNEKQFERRASTAGTIGLRTRN
Subjt:  MDKSKRLLLKSKRSFRRRLPPIQSGDRIDYRNMSLIS--------------------------IAIKQARILSLLPFLNNEKQFERRASTAGTIGLRTRN

Query:  K
        K
Subjt:  K

A0A4D6SQK1 30S ribosomal protein S18, chloroplastic

1.4e-26

68.97

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Query:  RNRIFGIRN---KQTMDKSKRLLLKSKRSFRRRLPPIQSGDRIDYRNMSLIS--------------------------IAIKQARILSLLPFLNNEKQFE
        RNRIFGIRN   KQTMDKSKR  LKSKRSFRRRLPPIQSGDRIDYRNMSLIS                          IAIKQARILSLLPFLNNEKQFE
Subjt:  RNRIFGIRN---KQTMDKSKRLLLKSKRSFRRRLPPIQSGDRIDYRNMSLIS--------------------------IAIKQARILSLLPFLNNEKQFE

Query:  RRASTAGTIGLRTRNK
        R  STA T GLRTR K
Subjt:  RRASTAGTIGLRTRNK

A0A6N0A3K0 30S ribosomal protein S18, chloroplastic

1.4e-26

68.97

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Query:  RNRIFGIRN---KQTMDKSKRLLLKSKRSFRRRLPPIQSGDRIDYRNMSLIS--------------------------IAIKQARILSLLPFLNNEKQFE
        RNRIFGIRN   KQTMDKSKR  LKSKRSFRRRLPPIQSGDRIDYRNMSLIS                          IAIKQARILSLLPFLNNEKQFE
Subjt:  RNRIFGIRN---KQTMDKSKRLLLKSKRSFRRRLPPIQSGDRIDYRNMSLIS--------------------------IAIKQARILSLLPFLNNEKQFE

Query:  RRASTAGTIGLRTRNK
        R  STA T GLRTR K
Subjt:  RRASTAGTIGLRTRNK

A0A7L9K3S2 30S ribosomal protein S18, chloroplastic

1.4e-26

69.03

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Query:  RNRIFGIRNKQTMDKSKRLLLKSKRSFRRRLPPIQSGDRIDYRNMSLIS--------------------------IAIKQARILSLLPFLNNEKQFERRA
        RNRIFG  NKQTMDKSKR LLKSKRSFRRRLPPIQSGD+IDYRNMSLIS                          IAIKQARILSLLPFLNNEKQFER  
Subjt:  RNRIFGIRNKQTMDKSKRLLLKSKRSFRRRLPPIQSGDRIDYRNMSLIS--------------------------IAIKQARILSLLPFLNNEKQFERRA

Query:  STAGTIGLRTRNK
        ST  T GLRTRNK
Subjt:  STAGTIGLRTRNK

SwissProt top hits

e value

%identity

Alignment

A0ZZ57 30S ribosomal protein S18, chloroplastic

2.1e-24

67.33

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Query:  MDKSKRLLLKSKRSFRRRLPPIQSGDRIDYRNMSLIS--------------------------IAIKQARILSLLPFLNNEKQFERRASTAGTIGLRTRN
        MDKSKRL LKSKRSFRRRLPPIQSGDRIDYRNMSLIS                          IAIKQARILSLLPFLNNEKQFER  ST  T  LRTRN
Subjt:  MDKSKRLLLKSKRSFRRRLPPIQSGDRIDYRNMSLIS--------------------------IAIKQARILSLLPFLNNEKQFERRASTAGTIGLRTRN

Query:  K
        K
Subjt:  K

B1A957 30S ribosomal protein S18, chloroplastic

8.0e-24

66.34

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Query:  MDKSKRLLLKSKRSFRRRLPPIQSGDRIDYRNMSLIS--------------------------IAIKQARILSLLPFLNNEKQFERRASTAGTIGLRTRN
        MDKSKRL  KSKRSFRRRLPPIQSGDRIDYRNMSLIS                          IAIKQARILS LPFLNNEKQFER  ST  T GLRTRN
Subjt:  MDKSKRLLLKSKRSFRRRLPPIQSGDRIDYRNMSLIS--------------------------IAIKQARILSLLPFLNNEKQFERRASTAGTIGLRTRN

Query:  K
        K
Subjt:  K

Q0G9U0 30S ribosomal protein S18, chloroplastic

1.0e-23

66.34

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Query:  MDKSKRLLLKSKRSFRRRLPPIQSGDRIDYRNMSLIS--------------------------IAIKQARILSLLPFLNNEKQFERRASTAGTIGLRTRN
        MDKSKR  LKSKRSFRRRLPPIQSGDRIDYRNMSLIS                          IAIKQARILSLLPFLNNEKQFER  ST  T GLR RN
Subjt:  MDKSKRLLLKSKRSFRRRLPPIQSGDRIDYRNMSLIS--------------------------IAIKQARILSLLPFLNNEKQFERRASTAGTIGLRTRN

Query:  K
        K
Subjt:  K

Q0ZIZ8 30S ribosomal protein S18, chloroplastic

4.7e-24

67.33

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Query:  MDKSKRLLLKSKRSFRRRLPPIQSGDRIDYRNMSLIS--------------------------IAIKQARILSLLPFLNNEKQFERRASTAGTIGLRTRN
        MDKSKR  LKSKRSFRRRLPPIQSGDRIDYRNMSLIS                          IAIKQARILS LPFLNNEKQFER  STA T GLRTRN
Subjt:  MDKSKRLLLKSKRSFRRRLPPIQSGDRIDYRNMSLIS--------------------------IAIKQARILSLLPFLNNEKQFERRASTAGTIGLRTRN

Query:  K
        K
Subjt:  K

Q49KX7 30S ribosomal protein S18, chloroplastic

1.6e-24

67.33

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Query:  MDKSKRLLLKSKRSFRRRLPPIQSGDRIDYRNMSLIS--------------------------IAIKQARILSLLPFLNNEKQFERRASTAGTIGLRTRN
        M+KSKRL LKSKRSFRRRLPPIQSGDRIDYRNMSLIS                          IAIKQARILSLLPFLNNEKQFER  STAG  GLRT N
Subjt:  MDKSKRLLLKSKRSFRRRLPPIQSGDRIDYRNMSLIS--------------------------IAIKQARILSLLPFLNNEKQFERRASTAGTIGLRTRN

Query:  K
        K
Subjt:  K

Arabidopsis top hits

e value

%identity

Alignment

ATCG00650.1 ribosomal protein S18

3.1e-23

63.37

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Query:  MDKSKRLLLKSKRSFRRRLPPIQSGDRIDYRNMSLIS--------------------------IAIKQARILSLLPFLNNEKQFERRASTAGTIGLRTRN
        M+KSKRL  KSKRSFRRRLPPIQSGDRIDYRNMSLIS                          IAIKQARILSLLPFLNN+KQFER  ST  T  LRTR 
Subjt:  MDKSKRLLLKSKRSFRRRLPPIQSGDRIDYRNMSLIS--------------------------IAIKQARILSLLPFLNNEKQFERRASTAGTIGLRTRN

Query:  K
        K
Subjt:  K

Sequences

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CDS sequence

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ATGGATCTCGTCTTCCTTACCCGACTTTGGCCGATTTTCCGGCGAGCTTTCTCTCTCCTTCCCGCGGCGTTTCCGTTGCCGATTTTGGTCCTCTTCCTTCCCTTTTCCTC
TTTGTGTTCTGAAGATGCTGGGCTGAGGGTGGGCGTGCTGTGGCCGTCGTTTCGCGTGGGTTCCGTGAAACTCGGCGGTCGCCGGAAAACTCGCGGGTTTTCCGGCAACT
GGAATGATTCGGATTTGATTGGTCCTAGCACTCGTAACGAGACAAGTAGGTGTGGAGATAGGACGCTAACCATCAAAAAACGACTATTGTTCGTGAAGGTTTCCACAGAA
AAACCCCTGAGTTCTGGCAAACAGATCACAATTACAGAGAGTTCCGGATCAAGAAGAAATAGGGGAATATCGTCTTTGGTTCGTTCAGTATCAGTAGTTCAGTTCGTGAA
CTCTTCAGTCGTCAAGAAAGCAGAAGAAAGAAGCCGCATTCTCTATACATCCCCTTTTCTTTGTCTTTTACTGCCGAGTGATTGCAAAGAGAAAAGAGAGACCAATAAGG
AGAGTCGTTCAGTCATCAGAGAATCCGATCGAAATAGGATTTTCGGGATAAGGAATAAACAAACCATGGATAAATCCAAGAGACTCCTTCTTAAATCCAAACGATCTTTT
CGTAGGCGTTTGCCCCCGATTCAATCGGGGGATCGAATTGATTATAGAAACATGAGTTTAATTAGTATTGCTATAAAACAAGCTCGTATTTTATCTTTGTTACCTTTTCT
TAATAATGAGAAACAATTTGAAAGAAGGGCGTCTACCGCTGGAACTATTGGTCTTAGAACCAGGAATAAATAG

mRNA sequence

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Protein sequence

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MDLVFLTRLWPIFRRAFSLLPAAFPLPILVLFLPFSSLCSEDAGLRVGVLWPSFRVGSVKLGGRRKTRGFSGNWNDSDLIGPSTRNETSRCGDRTLTIKKRLLFVKVSTE
KPLSSGKQITITESSGSRRNRGISSLVRSVSVVQFVNSSVVKKAEERSRILYTSPFLCLLLPSDCKEKRETNKESRSVIRESDRNRIFGIRNKQTMDKSKRLLLKSKRSF
RRRLPPIQSGDRIDYRNMSLISIAIKQARILSLLPFLNNEKQFERRASTAGTIGLRTRNK

CmoCh12G007830 (gene) of Cucurbita moschata (Rifu) v1 genome