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CmoCh12G007860 (gene) of Cucurbita moschata (Rifu) v1 genome

Gene IDCmoCh12G007860
OrganismCucurbita moschata Rifu (Cucurbita moschata (Rifu) v1)
DescriptionCCHC-type domain-containing protein
Genome locationCmo_Chr12:6385040..6389350
RNA-Seq ExpressionCmoCh12G007860
SyntenyCmoCh12G007860
Gene Ontology termsGO:0016021 - integral component of membrane (cellular component)
GO:0003676 - nucleic acid binding (molecular function)
GO:0008270 - zinc ion binding (molecular function)
InterPro domainsIPR001878 - Zinc finger, CCHC-type
IPR036875 - Zinc finger, CCHC-type superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0046182.1 zf-CCHC domain-containing protein/UBN2 domain-containing protein [Cucumis melo var. makuwa]2.2e-6174.86Show/hide
Query:  RKILRSLPKSWEAKVTAIQEAKDLTKLPLDELVGSLMTHEITMNGHMEEESKKKKSIALKSIKVDSEDEDVLDEDDVAYFTRKYKNFIKRKKQFKKHFTN
        RKIL  LPK+W+AKVTAIQEAKDLTKLPL+EL+GSLMTHEI M  H+E+ESKKKKSIAL +I ++ EDED LDEDD+ YF+RKYKNFIKRKK FKK+ + 
Subjt:  RKILRSLPKSWEAKVTAIQEAKDLTKLPLDELVGSLMTHEITMNGHMEEESKKKKSIALKSIKVDSEDEDVLDEDDVAYFTRKYKNFIKRKKQFKKHFTN

Query:  QKESKGEKSKNDEVICYECKKPGHIRTDCPLLKSSKKSKKKAMKATWDDSDESASGSDEEVANFCFMAHSDKEDEQEDE
        QK SKGEKSK DEVICYECKK  HIRTDCP LKSSKKSK+KAMKATWDDS ES S   EE AN   M  SDKEDE +DE
Subjt:  QKESKGEKSKNDEVICYECKKPGHIRTDCPLLKSSKKSKKKAMKATWDDSDESASGSDEEVANFCFMAHSDKEDEQEDE

KAA0046765.1 zf-CCHC domain-containing protein/UBN2 domain-containing protein [Cucumis melo var. makuwa]2.8e-5676.83Show/hide
Query:  IQEAKDLTKLPLDELVGSLMTHEITMNGHMEEESKKKKSIALK--SIKVDSEDEDVLDEDDVAYFTRKYKNFIKRKKQFKKHFTNQKESKGEKSKNDEVI
        IQEAKDLTKLPL+EL+GSLMTHEI M  H+E+ESKKKKSIALK  S++VD EDED LD+DD+ Y +RKYKNFIKRKK FKKH + QKESKGEKSK DEVI
Subjt:  IQEAKDLTKLPLDELVGSLMTHEITMNGHMEEESKKKKSIALK--SIKVDSEDEDVLDEDDVAYFTRKYKNFIKRKKQFKKHFTNQKESKGEKSKNDEVI

Query:  CYECKKPGHIRTDCPLLKSSKKSKKKAMKATWDDSDESASGSDEEVANFCFMAHSDKEDEQEDE
        CYECKK  HIRTDCPLLKSSKKSKKKAMKATWDDS ES S   E++     MAHSDKEDEQ+DE
Subjt:  CYECKKPGHIRTDCPLLKSSKKSKKKAMKATWDDSDESASGSDEEVANFCFMAHSDKEDEQEDE

XP_022158792.1 uncharacterized protein LOC111025259 [Momordica charantia]5.7e-5765.17Show/hide
Query:  FTNILNALKNLGKVYSTSENVRKILRSLPKSWEAKVTAIQEAKDLTKLPLDELVGSLMTHEITMNGHMEEESKKKKSIALKSIKVDSEDEDVLDEDDVAY
        FTNI+NAL+ LGK YS  E V+K+L SLPK WE KVTAIQEAKDL  L +DEL+G                                  E+ LDEDDVAY
Subjt:  FTNILNALKNLGKVYSTSENVRKILRSLPKSWEAKVTAIQEAKDLTKLPLDELVGSLMTHEITMNGHMEEESKKKKSIALKSIKVDSEDEDVLDEDDVAY

Query:  FTRKYKNFIKRKKQFKKHFTNQKESKGEKSKNDEVICYECKKPGHIRTDCPLLKSSKKSKKKAMKATWDDSDESASGSD-EEVANFCFMAHSDKEDEQED
         +RKYKNFIKRKKQFKK+F+N KE K E SK DEVICYECKKPGHIRTDCP LKSSKKSKKKAMKATWDDSDES + S+ EEVANFCFMAHSDKEDE++D
Subjt:  FTRKYKNFIKRKKQFKKHFTNQKESKGEKSKNDEVICYECKKPGHIRTDCPLLKSSKKSKKKAMKATWDDSDESASGSD-EEVANFCFMAHSDKEDEQED

Query:  E
        E
Subjt:  E

XP_022931810.1 uncharacterized protein LOC111438099 [Cucurbita moschata]2.0e-70100Show/hide
Query:  FTNILNALKNLGKVYSTSENVRKILRSLPKSWEAKVTAIQEAKDLTKLPLDELVGSLMTHEITMNGHMEEESKKKKSIALKSIKVDSEDEDVLDEDDVAY
        FTNILNALKNLGKVYSTSENVRKILRSLPKSWEAKVTAIQEAKDLTKLPLDELVGSLMTHEITMNGHMEEESKKKKSIALKSIKVDSEDEDVLDEDDVAY
Subjt:  FTNILNALKNLGKVYSTSENVRKILRSLPKSWEAKVTAIQEAKDLTKLPLDELVGSLMTHEITMNGHMEEESKKKKSIALKSIKVDSEDEDVLDEDDVAY

Query:  FTRKYKNFIKRKKQFKKHFTNQKESKGEKSKNDEVICYECKKPG
        FTRKYKNFIKRKKQFKKHFTNQKESKGEKSKNDEVICYECKKPG
Subjt:  FTRKYKNFIKRKKQFKKHFTNQKESKGEKSKNDEVICYECKKPG

XP_031741720.1 uncharacterized protein LOC116403915 [Cucumis sativus]2.6e-7880.69Show/hide
Query:  FTNILNALKNLGKVYSTSENVRKILRSLPKSWEAKVTAIQEAKDLTKLPLDELVGSLMTHEITMNGHMEEESKKKKSIALK--SIKVDSEDEDVLDEDDV
        FTNI+NALK LGKVY+TSENVRKILRSLPK+WEAKVTAIQEAKDLTKLPL+EL+GSLMTHEI M  H+E+ESKKKKSIALK  S++VD EDED LDEDD+
Subjt:  FTNILNALKNLGKVYSTSENVRKILRSLPKSWEAKVTAIQEAKDLTKLPLDELVGSLMTHEITMNGHMEEESKKKKSIALK--SIKVDSEDEDVLDEDDV

Query:  AYFTRKYKNFIKRKKQFKKHFTNQKESKGEKSKNDEVICYECKKPGHIRTDCPLLKSSKKSKKKAMKATWDDSDESASGSDEEVANFCFMAHSDKEDEQE
        AYF+RKYKNFIKRKK FKKH + QKESKGEKSK DEVICYECK+ GHIRTDCPLLKSSKKSKKKAMKATWDDS ES S   EE+AN   MAHSDK+DE +
Subjt:  AYFTRKYKNFIKRKKQFKKHFTNQKESKGEKSKNDEVICYECKKPGHIRTDCPLLKSSKKSKKKAMKATWDDSDESASGSDEEVANFCFMAHSDKEDEQE

Query:  DE
        D+
Subjt:  DE

TrEMBL top hitse value%identityAlignment
A0A5A7TRZ7 Zf-CCHC domain-containing protein/UBN2 domain-containing protein1.1e-6174.86Show/hide
Query:  RKILRSLPKSWEAKVTAIQEAKDLTKLPLDELVGSLMTHEITMNGHMEEESKKKKSIALKSIKVDSEDEDVLDEDDVAYFTRKYKNFIKRKKQFKKHFTN
        RKIL  LPK+W+AKVTAIQEAKDLTKLPL+EL+GSLMTHEI M  H+E+ESKKKKSIAL +I ++ EDED LDEDD+ YF+RKYKNFIKRKK FKK+ + 
Subjt:  RKILRSLPKSWEAKVTAIQEAKDLTKLPLDELVGSLMTHEITMNGHMEEESKKKKSIALKSIKVDSEDEDVLDEDDVAYFTRKYKNFIKRKKQFKKHFTN

Query:  QKESKGEKSKNDEVICYECKKPGHIRTDCPLLKSSKKSKKKAMKATWDDSDESASGSDEEVANFCFMAHSDKEDEQEDE
        QK SKGEKSK DEVICYECKK  HIRTDCP LKSSKKSK+KAMKATWDDS ES S   EE AN   M  SDKEDE +DE
Subjt:  QKESKGEKSKNDEVICYECKKPGHIRTDCPLLKSSKKSKKKAMKATWDDSDESASGSDEEVANFCFMAHSDKEDEQEDE

A0A5A7TZF4 Zf-CCHC domain-containing protein/UBN2 domain-containing protein1.4e-5676.83Show/hide
Query:  IQEAKDLTKLPLDELVGSLMTHEITMNGHMEEESKKKKSIALK--SIKVDSEDEDVLDEDDVAYFTRKYKNFIKRKKQFKKHFTNQKESKGEKSKNDEVI
        IQEAKDLTKLPL+EL+GSLMTHEI M  H+E+ESKKKKSIALK  S++VD EDED LD+DD+ Y +RKYKNFIKRKK FKKH + QKESKGEKSK DEVI
Subjt:  IQEAKDLTKLPLDELVGSLMTHEITMNGHMEEESKKKKSIALK--SIKVDSEDEDVLDEDDVAYFTRKYKNFIKRKKQFKKHFTNQKESKGEKSKNDEVI

Query:  CYECKKPGHIRTDCPLLKSSKKSKKKAMKATWDDSDESASGSDEEVANFCFMAHSDKEDEQEDE
        CYECKK  HIRTDCPLLKSSKKSKKKAMKATWDDS ES S   E++     MAHSDKEDEQ+DE
Subjt:  CYECKKPGHIRTDCPLLKSSKKSKKKAMKATWDDSDESASGSDEEVANFCFMAHSDKEDEQEDE

A0A5D3E1G2 Zf-CCHC domain-containing protein/UBN2 domain-containing protein8.9e-5675.61Show/hide
Query:  IQEAKDLTKLPLDELVGSLMTHEITMNGHMEEESKKKKSIALK--SIKVDSEDEDVLDEDDVAYFTRKYKNFIKRKKQFKKHFTNQKESKGEKSKNDEVI
        IQEAKDLTKLPL+EL+GSLMTHEI M  H+E+ESKKKKSIALK  S++VD EDED LD+DD+ Y +RKYKNFIK+KK FKKH + QKESKGEKSK DEVI
Subjt:  IQEAKDLTKLPLDELVGSLMTHEITMNGHMEEESKKKKSIALK--SIKVDSEDEDVLDEDDVAYFTRKYKNFIKRKKQFKKHFTNQKESKGEKSKNDEVI

Query:  CYECKKPGHIRTDCPLLKSSKKSKKKAMKATWDDSDESASGSDEEVANFCFMAHSDKEDEQEDE
        CYECKK  HIRTDCPLLKSSKKSKKK MKATWDDS ES S   E++     MAHSDKEDEQ+DE
Subjt:  CYECKKPGHIRTDCPLLKSSKKSKKKAMKATWDDSDESASGSDEEVANFCFMAHSDKEDEQEDE

A0A6J1DY46 uncharacterized protein LOC1110252592.8e-5765.17Show/hide
Query:  FTNILNALKNLGKVYSTSENVRKILRSLPKSWEAKVTAIQEAKDLTKLPLDELVGSLMTHEITMNGHMEEESKKKKSIALKSIKVDSEDEDVLDEDDVAY
        FTNI+NAL+ LGK YS  E V+K+L SLPK WE KVTAIQEAKDL  L +DEL+G                                  E+ LDEDDVAY
Subjt:  FTNILNALKNLGKVYSTSENVRKILRSLPKSWEAKVTAIQEAKDLTKLPLDELVGSLMTHEITMNGHMEEESKKKKSIALKSIKVDSEDEDVLDEDDVAY

Query:  FTRKYKNFIKRKKQFKKHFTNQKESKGEKSKNDEVICYECKKPGHIRTDCPLLKSSKKSKKKAMKATWDDSDESASGSD-EEVANFCFMAHSDKEDEQED
         +RKYKNFIKRKKQFKK+F+N KE K E SK DEVICYECKKPGHIRTDCP LKSSKKSKKKAMKATWDDSDES + S+ EEVANFCFMAHSDKEDE++D
Subjt:  FTRKYKNFIKRKKQFKKHFTNQKESKGEKSKNDEVICYECKKPGHIRTDCPLLKSSKKSKKKAMKATWDDSDESASGSD-EEVANFCFMAHSDKEDEQED

Query:  E
        E
Subjt:  E

A0A6J1F0H1 uncharacterized protein LOC1114380999.8e-71100Show/hide
Query:  FTNILNALKNLGKVYSTSENVRKILRSLPKSWEAKVTAIQEAKDLTKLPLDELVGSLMTHEITMNGHMEEESKKKKSIALKSIKVDSEDEDVLDEDDVAY
        FTNILNALKNLGKVYSTSENVRKILRSLPKSWEAKVTAIQEAKDLTKLPLDELVGSLMTHEITMNGHMEEESKKKKSIALKSIKVDSEDEDVLDEDDVAY
Subjt:  FTNILNALKNLGKVYSTSENVRKILRSLPKSWEAKVTAIQEAKDLTKLPLDELVGSLMTHEITMNGHMEEESKKKKSIALKSIKVDSEDEDVLDEDDVAY

Query:  FTRKYKNFIKRKKQFKKHFTNQKESKGEKSKNDEVICYECKKPG
        FTRKYKNFIKRKKQFKKHFTNQKESKGEKSKNDEVICYECKKPG
Subjt:  FTRKYKNFIKRKKQFKKHFTNQKESKGEKSKNDEVICYECKKPG

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGAAATTATGTTCACAACTCCTTATTTGGTCTAGTCTCGTGGAAGGCATATTGAATCAACTAAAAGAGTCATTCTCACCCATATTTACTAATATTTTAAATGCTTTGAA
AAATCTTGGAAAAGTATATTCTACTTCCGAAAATGTAAGAAAAATTCTTAGGTCTTTGCCTAAAAGTTGGGAGGCAAAAGTGACGGCGATTCAAGAAGCAAAGGATCTCA
CAAAGCTTCCTTTGGATGAACTCGTTGGTTCTCTCATGACACATGAGATTACCATGAACGGGCACATGGAAGAAGAATCCAAAAAGAAGAAAAGTATAGCCCTAAAGTCC
ATCAAAGTTGACTCTGAAGATGAGGACGTCCTTGATGAAGATGATGTCGCCTACTTCACACGTAAGTATAAAAATTTTATTAAAAGGAAGAAACAATTCAAGAAACATTT
CACAAATCAAAAAGAGTCAAAAGGTGAGAAGAGCAAAAACGATGAGGTAATATGTTATGAATGTAAAAAGCCGGGTCATATAAGAACGGATTGTCCTCTCCTCAAATCAT
CTAAGAAATCCAAGAAGAAAGCAATGAAGGCTACTTGGGATGATAGTGATGAAAGTGCAAGTGGAAGTGATGAAGAAGTAGCAAATTTTTGCTTCATGGCTCATAGTGAC
AAAGAGGATGAACAAGAAGATGAACAAGAAGATGAG
mRNA sequenceShow/hide mRNA sequence
ATGAAATTATGTTCACAACTCCTTATTTGGTCTAGTCTCGTGGAAGGCATATTGAATCAACTAAAAGAGTCATTCTCACCCATATTTACTAATATTTTAAATGCTTTGAA
AAATCTTGGAAAAGTATATTCTACTTCCGAAAATGTAAGAAAAATTCTTAGGTCTTTGCCTAAAAGTTGGGAGGCAAAAGTGACGGCGATTCAAGAAGCAAAGGATCTCA
CAAAGCTTCCTTTGGATGAACTCGTTGGTTCTCTCATGACACATGAGATTACCATGAACGGGCACATGGAAGAAGAATCCAAAAAGAAGAAAAGTATAGCCCTAAAGTCC
ATCAAAGTTGACTCTGAAGATGAGGACGTCCTTGATGAAGATGATGTCGCCTACTTCACACGTAAGTATAAAAATTTTATTAAAAGGAAGAAACAATTCAAGAAACATTT
CACAAATCAAAAAGAGTCAAAAGGTGAGAAGAGCAAAAACGATGAGGTAATATGTTATGAATGTAAAAAGCCGGGTCATATAAGAACGGATTGTCCTCTCCTCAAATCAT
CTAAGAAATCCAAGAAGAAAGCAATGAAGGCTACTTGGGATGATAGTGATGAAAGTGCAAGTGGAAGTGATGAAGAAGTAGCAAATTTTTGCTTCATGGCTCATAGTGAC
AAAGAGGATGAACAAGAAGATGAACAAGAAGATGAG
Protein sequenceShow/hide protein sequence
MKLCSQLLIWSSLVEGILNQLKESFSPIFTNILNALKNLGKVYSTSENVRKILRSLPKSWEAKVTAIQEAKDLTKLPLDELVGSLMTHEITMNGHMEEESKKKKSIALKS
IKVDSEDEDVLDEDDVAYFTRKYKNFIKRKKQFKKHFTNQKESKGEKSKNDEVICYECKKPGHIRTDCPLLKSSKKSKKKAMKATWDDSDESASGSDEEVANFCFMAHSD
KEDEQEDEQEDE