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CmoCh12G007890 (gene) of Cucurbita moschata (Rifu) v1 genome

Gene IDCmoCh12G007890
OrganismCucurbita moschata Rifu (Cucurbita moschata (Rifu) v1)
DescriptionRibosomal_L2_C domain-containing protein
Genome locationCmo_Chr12:6618055..6618522
RNA-Seq ExpressionCmoCh12G007890
SyntenyCmoCh12G007890
Gene Ontology termsGO:0006412 - translation (biological process)
GO:0005739 - mitochondrion (cellular component)
GO:0005840 - ribosome (cellular component)
GO:0003735 - structural constituent of ribosome (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAE9452443.1 hypothetical protein C3L33_15655, partial [Rhododendron williamsianum]2.1e-0680.95Show/hide
Query:  QGAVKAQSWPAGTFAKRMKEPAPPTLSLRLVRLPSGVEKLID
        QGA  A++  AGTFAK MKEPAPPTLSLRLVRLPSGVEK+ID
Subjt:  QGAVKAQSWPAGTFAKRMKEPAPPTLSLRLVRLPSGVEKLID
KAF7117261.1 hypothetical protein RHSIM_RhsimMtG0002500 [Rhododendron simsii]2.1e-0680.95Show/hide
Query:  QGAVKAQSWPAGTFAKRMKEPAPPTLSLRLVRLPSGVEKLID
        QGA  A++  AGTFAK MKEPAPPTLSLRLVRLPSGVEK+ID
Subjt:  QGAVKAQSWPAGTFAKRMKEPAPPTLSLRLVRLPSGVEKLID
PLC31979.1 50S ribosomal protein L2, partial [Lacticaseibacillus rhamnosus]1.1e-0578.57Show/hide
Query:  QGAVKAQSWPAGTFAKRMKEPAPPTLSLRLVRLPSGVEKLID
        QGA  A++  AGTFAK MKEPAPPTLSLRLVR PSGVEKL+D
Subjt:  QGAVKAQSWPAGTFAKRMKEPAPPTLSLRLVRLPSGVEKLID
WP_165001736.1 hypothetical protein [Candidatus Frankia datiscae]4.8e-0673.33Show/hide
Query:  ECQGAVKAQ-SWPAGTFAKRMKEPAPPTLSLRLVRLPSGVEKLID
        EC  +  A+ +  AGTFAK MKEPAPPTLSLRLVRLPSGVEK+ID
Subjt:  ECQGAVKAQ-SWPAGTFAKRMKEPAPPTLSLRLVRLPSGVEKLID
TrEMBL top hitse value%identityAlignment
A0A5C7GQ80 Ribosomal_L2_C domain-containing protein1.5e-0590.62Show/hide
Query:  AGTFAKRMKEPAPPTLSLRLVRLPSGVEKLID
        AGTFAK MKEPAPP LSLRLVRLPSGVEK+ID
Subjt:  AGTFAKRMKEPAPPTLSLRLVRLPSGVEKLID
A0A6A4KY61 Ribosomal_L2_C domain-containing protein (Fragment)1.0e-0680.95Show/hide
Query:  QGAVKAQSWPAGTFAKRMKEPAPPTLSLRLVRLPSGVEKLID
        QGA  A++  AGTFAK MKEPAPPTLSLRLVRLPSGVEK+ID
Subjt:  QGAVKAQSWPAGTFAKRMKEPAPPTLSLRLVRLPSGVEKLID
A0A6N2NEG2 Ribosomal_L2_C domain-containing protein7.5e-0546.15Show/hide
Query:  MAIHPKTLFTQRRNAECQGAVK--------------------------------AQSWPAGTFAKRMKEPAPPTLSLRLVRLPSGVEKLID
        M IH KTLFTQRR AE +GAV                                   S  AGT AK MK    PTLSLRLVRLPSGVEK+ID
Subjt:  MAIHPKTLFTQRRNAECQGAVK--------------------------------AQSWPAGTFAKRMKEPAPPTLSLRLVRLPSGVEKLID
SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGATTGGTCCAAACCTTAGACCAGAGACTTATTACGACCCGCCCAGAATGGCCATACATCCTAAGACCTTATTCACACAGCGAAGAAATGCCGAATGTCAGGGGGCAGT
CAAAGCGCAAAGCTGGCCCGCAGGAACTTTTGCTAAAAGAATGAAGGAACCTGCACCCCCTACACTCTCTCTTAGGCTTGTGCGGCTACCTTCGGGTGTTGAAAAACTCA
TTGATGGAGCCGAGCTACTACTACTAAAGGAGGTAGACCTTCGGTGTCACCTTGAGGGAAGCCCACCAGGGATTTCGGGCGGGGGCGGAATCGAAGCGAAGAAATTCTGA
mRNA sequenceShow/hide mRNA sequence
ATGATTGGTCCAAACCTTAGACCAGAGACTTATTACGACCCGCCCAGAATGGCCATACATCCTAAGACCTTATTCACACAGCGAAGAAATGCCGAATGTCAGGGGGCAGT
CAAAGCGCAAAGCTGGCCCGCAGGAACTTTTGCTAAAAGAATGAAGGAACCTGCACCCCCTACACTCTCTCTTAGGCTTGTGCGGCTACCTTCGGGTGTTGAAAAACTCA
TTGATGGAGCCGAGCTACTACTACTAAAGGAGGTAGACCTTCGGTGTCACCTTGAGGGAAGCCCACCAGGGATTTCGGGCGGGGGCGGAATCGAAGCGAAGAAATTCTGA
Protein sequenceShow/hide protein sequence
MIGPNLRPETYYDPPRMAIHPKTLFTQRRNAECQGAVKAQSWPAGTFAKRMKEPAPPTLSLRLVRLPSGVEKLIDGAELLLLKEVDLRCHLEGSPPGISGGGGIEAKKF