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CmoCh12G007900 (gene) of Cucurbita moschata (Rifu) v1 genome

Gene IDCmoCh12G007900
OrganismCucurbita moschata Rifu (Cucurbita moschata (Rifu) v1)
DescriptionRibosomal protein S3
Genome locationCmo_Chr12:6618678..6619198
RNA-Seq ExpressionCmoCh12G007900
SyntenyCmoCh12G007900
Gene Ontology termsGO:0006412 - translation (biological process)
GO:0005840 - ribosome (cellular component)
GO:0003735 - structural constituent of ribosome (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
EEF26991.1 conserved hypothetical protein [Ricinus communis]5.4e-1665.85Show/hide
Query:  MARKGNPISVRLDLNRSSDSSWFSEGDRKSHR----------------------IGRTRLLLTLEDHWKTPGTRACRERSTL
        MARKGNPISVRLDLNRSSDSS FSEGDR+SHR                       GRTRLLLTLEDH   PGTRACRERSTL
Subjt:  MARKGNPISVRLDLNRSSDSSWFSEGDRKSHR----------------------IGRTRLLLTLEDHWKTPGTRACRERSTL

KAF3774432.1 Ribosomal protein S19 [Nymphaea thermarum]6.4e-1759.62Show/hide
Query:  KKGE--KGKAHMARKGNPISVRLDLNRSSDSSWFSEGDRKSH--------RIGRTRLLLTLEDHWKTPGTRACRERSTLA----VLRPCLWGTVECRYHE
        KKGE  K K HMARKGNPISVRLDLNRSSDSS FSEGDR+SH        R GRT L ++  D   +   R   +   L+    VLRPCL GTVEC YHE
Subjt:  KKGE--KGKAHMARKGNPISVRLDLNRSSDSSWFSEGDRKSH--------RIGRTRLLLTLEDHWKTPGTRACRERSTLA----VLRPCLWGTVECRYHE

Query:  REVQ
        REVQ
Subjt:  REVQ

QCD82337.1 small subunit ribosomal protein S3 [Vigna unguiculata]1.2e-2375.31Show/hide
Query:  MARKGNPISVRLDLNRSSDSSWFSEGDRKSHRIGRTRLLLTLEDHWKTPGTRACRERSTLAVLRPCLWGTVECRYHEREVQ
        MARKGNPISVRLDLNRSSDSS FSEGDR+SHR          EDHWKTP TRA RERST+ VLR CL GTVECRYHERE +
Subjt:  MARKGNPISVRLDLNRSSDSSWFSEGDRKSHRIGRTRLLLTLEDHWKTPGTRACRERSTLAVLRPCLWGTVECRYHEREVQ

QVJ97848.1 hypothetical protein [Apium graveolens]7.2e-2969.81Show/hide
Query:  MARKGNPISVRLDLNRSSDSSWFSEGDRKSHRI-----------------------GRTRLLLTLEDHWKTPGTRACRERSTL--AVLRPCLWGTVECRY
        MARKGNPISVRL+ NRSSDSS FSEGDR+SH+I                       GRTRLLLTLEDHWKTPGTRACRERSTL   VLRPCL GTVECRY
Subjt:  MARKGNPISVRLDLNRSSDSSWFSEGDRKSHRI-----------------------GRTRLLLTLEDHWKTPGTRACRERSTL--AVLRPCLWGTVECRY

Query:  HEREVQ
        HEREVQ
Subjt:  HEREVQ

RWR88697.1 ribosomal protein S3 mitochondrion [Cinnamomum micranthum f. kanehirae]2.4e-1654.72Show/hide
Query:  MARKGNPISVRLDLNRSSDSSWFSEGDRKSHRIGRTRLLLTLEDHWKTPG-TRACRERSTLAVLRPCLWGTVECRYHEREVQ------PLPYVLIASASG
        MARKGNPISVRLDLNRSSD S FSEGDR+SHR+GR             PG     +E     VLRPCL GTVECRYHEREVQ      P  +  +  +  
Subjt:  MARKGNPISVRLDLNRSSDSSWFSEGDRKSHRIGRTRLLLTLEDHWKTPG-TRACRERSTLAVLRPCLWGTVECRYHEREVQ------PLPYVLIASASG

Query:  APGPSR
         PGP R
Subjt:  APGPSR

TrEMBL top hitse value%identityAlignment
A0A2P2MKQ6 Uncharacterized protein1.4e-1764.63Show/hide
Query:  MARKGNPISVRLDLNRSSDSSWFSEGDRKSHRI---------------------GRTRLLLTLEDHWKTPGTRACRERSTLA
        MA+KGNPISVRLD N SSDS WFSEGDR+SHR+                     GRTRLLLT EDHWKTPGTRACRERST A
Subjt:  MARKGNPISVRLDLNRSSDSSWFSEGDRKSHRI---------------------GRTRLLLTLEDHWKTPGTRACRERSTLA

A0A443PD47 Ribosomal protein S3 mitochondrion1.2e-1654.72Show/hide
Query:  MARKGNPISVRLDLNRSSDSSWFSEGDRKSHRIGRTRLLLTLEDHWKTPG-TRACRERSTLAVLRPCLWGTVECRYHEREVQ------PLPYVLIASASG
        MARKGNPISVRLDLNRSSD S FSEGDR+SHR+GR             PG     +E     VLRPCL GTVECRYHEREVQ      P  +  +  +  
Subjt:  MARKGNPISVRLDLNRSSDSSWFSEGDRKSHRIGRTRLLLTLEDHWKTPG-TRACRERSTLAVLRPCLWGTVECRYHEREVQ------PLPYVLIASASG

Query:  APGPSR
         PGP R
Subjt:  APGPSR

A0A4D6L1F3 Small subunit ribosomal protein S35.8e-2475.31Show/hide
Query:  MARKGNPISVRLDLNRSSDSSWFSEGDRKSHRIGRTRLLLTLEDHWKTPGTRACRERSTLAVLRPCLWGTVECRYHEREVQ
        MARKGNPISVRLDLNRSSDSS FSEGDR+SHR          EDHWKTP TRA RERST+ VLR CL GTVECRYHERE +
Subjt:  MARKGNPISVRLDLNRSSDSSWFSEGDRKSHRIGRTRLLLTLEDHWKTPGTRACRERSTLAVLRPCLWGTVECRYHEREVQ

A0A4D8YNS9 Uncharacterized protein2.6e-1653.21Show/hide
Query:  MARKGNPISVRLDLNRSSDSSWFSEGDRKSHRIGRTRLLLTLEDHWKTPG-TRACRERSTLAVLRPCLWGTVECRYHEREVQ------PLPYVLIASASG
        MARKGNPISVRLDLNRSSDSSWFSEGDR+     +     T E H   PG     +E     VLRPCL GTVECRYHEREVQ      P  +  +  +  
Subjt:  MARKGNPISVRLDLNRSSDSSWFSEGDRKSHRIGRTRLLLTLEDHWKTPG-TRACRERSTLAVLRPCLWGTVECRYHEREVQ------PLPYVLIASASG

Query:  APGPSRAGE
         PGP R  +
Subjt:  APGPSRAGE

B9TAP1 Uncharacterized protein2.6e-1665.85Show/hide
Query:  MARKGNPISVRLDLNRSSDSSWFSEGDRKSHR----------------------IGRTRLLLTLEDHWKTPGTRACRERSTL
        MARKGNPISVRLDLNRSSDSS FSEGDR+SHR                       GRTRLLLTLEDH   PGTRACRERSTL
Subjt:  MARKGNPISVRLDLNRSSDSSWFSEGDRKSHR----------------------IGRTRLLLTLEDHWKTPGTRACRERSTL

SwissProt top hitse value%identityAlignment
P26865 Ribosomal protein S3, mitochondrial4.9e-0484Show/hide
Query:  MARKGNPISVRLDLNRSSDSSWFSE
        MA+K NPISVRL+LNRSSDSSWFS+
Subjt:  MARKGNPISVRLDLNRSSDSSWFSE

P27754 Ribosomal protein S3, mitochondrial4.0e-0696Show/hide
Query:  MARKGNPISVRLDLNRSSDSSWFSE
        MARKGNPISVRLDLNRSSDSSWFS+
Subjt:  MARKGNPISVRLDLNRSSDSSWFSE

P92511 Uncharacterized ribosomal S3-like protein AtMg00690, mitochondrial5.6e-0858.21Show/hide
Query:  VVRSLKEGLVINLESLLQHKNEDFREQILDREKKGEKG--KAHMARKGNPISVRLDLNRSSDSSWFS
        V+RSL+  LVINLES    K    R  I+   KKG+K     +MARKGNPI VRL  NRSSDSSWFS
Subjt:  VVRSLKEGLVINLESLLQHKNEDFREQILDREKKGEKG--KAHMARKGNPISVRLDLNRSSDSSWFS

Q04716 Ribosomal protein S3, mitochondrial6.8e-06100Show/hide
Query:  MARKGNPISVRLDLNRSSDSSWFS
        MARKGNPISVRLDLNRSSDSSWFS
Subjt:  MARKGNPISVRLDLNRSSDSSWFS

Q95749 Ribosomal protein S3, mitochondrial5.8e-0592Show/hide
Query:  MARKGNPISVRLDLNRSSDSSWFSE
        MARKGNPISVRL  NRSSDSSWFSE
Subjt:  MARKGNPISVRLDLNRSSDSSWFSE

Arabidopsis top hitse value%identityAlignment
ATMG00090.1 structural constituent of ribosome;protein binding1.7e-0488Show/hide
Query:  MARKGNPISVRLDLNRSSDSSWFSE
        MARKGNPISVRL  NRSSDSS FSE
Subjt:  MARKGNPISVRLDLNRSSDSSWFSE

ATMG00690.1 hypothetical protein1.7e-0756.72Show/hide
Query:  VVRSLKEGLVINLESLLQHKNEDFREQILDREKKGEKG--KAHMARKGNPISVRLDLNRSSDSSWFS
        V+RSL+  LVINLES    K    R  I+   KKG+K     +MARKGNPI VRL  NRSSDSS FS
Subjt:  VVRSLKEGLVINLESLLQHKNEDFREQILDREKKGEKG--KAHMARKGNPISVRLDLNRSSDSSWFS


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGAAAAACTTTTGTTCGTTGTAAGATCACTGAAGGAAGGGTTGGTCATAAATTTGGAGAGTTTGCTTCAACACAAAAACGAAGACTTTCGAGAACAAATATTGGACCG
GGAAAAGAAAGGGGAGAAAGGCAAGGCGCATATGGCACGAAAAGGAAATCCGATTTCGGTAAGACTTGATCTGAATCGTAGTTCAGATTCAAGTTGGTTCAGTGAGGGCG
ACCGCAAAAGTCATCGAATAGGACGGACACGACTTCTTCTAACGCTAGAAGACCACTGGAAGACACCCGGGACCAGAGCATGTCGTGAAAGAAGCACACTGGCCGTGCTT
CGACCGTGTCTCTGGGGCACAGTTGAATGTAGATATCATGAACGCGAGGTGCAACCACTACCCTATGTGCTGATCGCTAGCGCATCCGGGGCCCCGGGGCCCAGCAGAGC
TGGAGAGGCCTAG
mRNA sequenceShow/hide mRNA sequence
ATGGAAAAACTTTTGTTCGTTGTAAGATCACTGAAGGAAGGGTTGGTCATAAATTTGGAGAGTTTGCTTCAACACAAAAACGAAGACTTTCGAGAACAAATATTGGACCG
GGAAAAGAAAGGGGAGAAAGGCAAGGCGCATATGGCACGAAAAGGAAATCCGATTTCGGTAAGACTTGATCTGAATCGTAGTTCAGATTCAAGTTGGTTCAGTGAGGGCG
ACCGCAAAAGTCATCGAATAGGACGGACACGACTTCTTCTAACGCTAGAAGACCACTGGAAGACACCCGGGACCAGAGCATGTCGTGAAAGAAGCACACTGGCCGTGCTT
CGACCGTGTCTCTGGGGCACAGTTGAATGTAGATATCATGAACGCGAGGTGCAACCACTACCCTATGTGCTGATCGCTAGCGCATCCGGGGCCCCGGGGCCCAGCAGAGC
TGGAGAGGCCTAG
Protein sequenceShow/hide protein sequence
MEKLLFVVRSLKEGLVINLESLLQHKNEDFREQILDREKKGEKGKAHMARKGNPISVRLDLNRSSDSSWFSEGDRKSHRIGRTRLLLTLEDHWKTPGTRACRERSTLAVL
RPCLWGTVECRYHEREVQPLPYVLIASASGAPGPSRAGEA