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CmoCh12G007910 (gene) of Cucurbita moschata (Rifu) v1 genome

Gene IDCmoCh12G007910
OrganismCucurbita moschata Rifu (Cucurbita moschata (Rifu) v1)
DescriptionRibosomal protein S3
Genome locationCmo_Chr12:6620547..6621080
RNA-Seq ExpressionCmoCh12G007910
SyntenyCmoCh12G007910
Gene Ontology termsGO:0044237 - cellular metabolic process (biological process)
GO:0005739 - mitochondrion (cellular component)
GO:0016020 - membrane (cellular component)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
AGC78894.1 hypothetical protein [Vicia faba]5.9e-5566.85Show/hide
Query:  MGQRIKRFDFVSWDPPQFWFESRVTGDYPARFGEHFESALVNRSPPY-QERSGSSHGGVAIDSIYYYGKSL---------------------------CI
        MGQRIKRFDFVS D PQ  FESRV GDYPARFGEHF SALVN SP   QERSG SHGGV IDSIYYYGK +                           CI
Subjt:  MGQRIKRFDFVSWDPPQFWFESRVTGDYPARFGEHFESALVNRSPPY-QERSGSSHGGVAIDSIYYYGKSL---------------------------CI

Query:  ILHFPKITFIHFFLPRRPRGLKQRSKSKPGKDQGRWWAFGKVGPIGCLHSSEDTKEERNKVRGREAEKRMESMIRLDD
        ++HFPK TFIHFFLPRRPR LK+R KS+PGK++GRWWAFGKVGPIGCLHSS   +EERN+VRGR A KR+ES IRLDD
Subjt:  ILHFPKITFIHFFLPRRPRGLKQRSKSKPGKDQGRWWAFGKVGPIGCLHSSEDTKEERNKVRGREAEKRMESMIRLDD

CAA7039579.1 unnamed protein product [Microthlaspi erraticum]2.1e-5264.25Show/hide
Query:  MGQRIKRFDFVSWDPPQFWFESRVTGDYPARFGEHFESALVNRSPPY-QERSGSSHGGVAIDSIYYYGKSL---------------------------CI
        MGQRIKR DF S DPPQ  FESRV GDYPARFGEHF   LVN SPP  Q+RSGS +GGV IDSIYYYGK +                           CI
Subjt:  MGQRIKRFDFVSWDPPQFWFESRVTGDYPARFGEHFESALVNRSPPY-QERSGSSHGGVAIDSIYYYGKSL---------------------------CI

Query:  ILHFPKITFIHFFLPRRPRGLKQRSKSKPGKDQGRWW-AFGKVGPIGCLHSSEDTKEERNKVRGREAEKRMESMIRLDD
        ILHFPK TFIHFFLPRRPR LK+R K++PGK++G+WW  FGK GPIGCLHSS+DT+EERN+VRGR A KR+ES IRLDD
Subjt:  ILHFPKITFIHFFLPRRPRGLKQRSKSKPGKDQGRWW-AFGKVGPIGCLHSSEDTKEERNKVRGREAEKRMESMIRLDD

KAC9261804.1 hypothetical protein E3N88_46084 [Mikania micrantha]4.8e-5768.54Show/hide
Query:  MGQRIKRFDFVSWDPPQFWFESRVTGDYPARFGEHFESALVNRSPPY-QERSGSSHGGVAIDSIYYYGKSL---------------------------CI
        MGQRIK FDFV+ DPPQ  FESRV GDYPARFGEHF+SALVN SPP  QERSGSSHGGV IDSIYYYGKS+                           CI
Subjt:  MGQRIKRFDFVSWDPPQFWFESRVTGDYPARFGEHFESALVNRSPPY-QERSGSSHGGVAIDSIYYYGKSL---------------------------CI

Query:  ILHFPKITFIHFFLPRRPRGLKQRSKSKPGKDQGRWWAFGKVGPIGCLHSSEDTKEERNKVRGREAEKRMESMIRLDD
        ILHFPK TFIHFFLPRRPR  K+R KS+PGK +G+WWAFGKVGPIGCLHSS+ T+EERN+VRGR A KR+ES IRLDD
Subjt:  ILHFPKITFIHFFLPRRPRGLKQRSKSKPGKDQGRWWAFGKVGPIGCLHSSEDTKEERNKVRGREAEKRMESMIRLDD

KAD4384600.1 hypothetical protein E3N88_24768 [Mikania micrantha]4.8e-5768.54Show/hide
Query:  MGQRIKRFDFVSWDPPQFWFESRVTGDYPARFGEHFESALVNRSPPY-QERSGSSHGGVAIDSIYYYGKSL---------------------------CI
        MGQRIK FDFV+ DPPQ  FESRV GDYPARFGEHF+SALVN SPP  QERSGSSHGGV IDSIYYYGKS+                           CI
Subjt:  MGQRIKRFDFVSWDPPQFWFESRVTGDYPARFGEHFESALVNRSPPY-QERSGSSHGGVAIDSIYYYGKSL---------------------------CI

Query:  ILHFPKITFIHFFLPRRPRGLKQRSKSKPGKDQGRWWAFGKVGPIGCLHSSEDTKEERNKVRGREAEKRMESMIRLDD
        ILHFPK TFIHFFLPRRPR  K+R KS+PGK +G+WWAFGKVGPIGCLHSS+ T+EERN+VRGR A KR+ES IRLDD
Subjt:  ILHFPKITFIHFFLPRRPRGLKQRSKSKPGKDQGRWWAFGKVGPIGCLHSSEDTKEERNKVRGREAEKRMESMIRLDD

YP_009315984.1 cytochrome c biogenesis FN [Cocos nucifera]7.2e-5364.61Show/hide
Query:  MGQRIKRFDFVSWDPPQFWFESRVTGDYPARFGEHFESALVNR-SPPYQERSGSSHGGVAIDSIYYYGKSL---------------------------CI
        MGQRIKRFDFV  DPPQ  FESRV GDYPARFGEH          PP Q+RSGSSHG V IDSIYYYGKS+                           CI
Subjt:  MGQRIKRFDFVSWDPPQFWFESRVTGDYPARFGEHFESALVNR-SPPYQERSGSSHGGVAIDSIYYYGKSL---------------------------CI

Query:  ILHFPKITFIHFFLPRRPRGLKQRSKSKPGKDQGRWWAFGKVGPIGCLHSSEDTKEERNKVRGREAEKRMESMIRLDD
        ILHFPK TFIHFFLPRRP  LK+R KS+PGK++GRWWAFGKVGPIGCLHSS+ T+EERN+VRGR A KR+ES IRLDD
Subjt:  ILHFPKITFIHFFLPRRPRGLKQRSKSKPGKDQGRWWAFGKVGPIGCLHSSEDTKEERNKVRGREAEKRMESMIRLDD

TrEMBL top hitse value%identityAlignment
A0A2Z2C4S0 Cytochrome c biogenesis FN3.5e-5364.61Show/hide
Query:  MGQRIKRFDFVSWDPPQFWFESRVTGDYPARFGEHFESALVNR-SPPYQERSGSSHGGVAIDSIYYYGKSL---------------------------CI
        MGQRIKRFDFV  DPPQ  FESRV GDYPARFGEH          PP Q+RSGSSHG V IDSIYYYGKS+                           CI
Subjt:  MGQRIKRFDFVSWDPPQFWFESRVTGDYPARFGEHFESALVNR-SPPYQERSGSSHGGVAIDSIYYYGKSL---------------------------CI

Query:  ILHFPKITFIHFFLPRRPRGLKQRSKSKPGKDQGRWWAFGKVGPIGCLHSSEDTKEERNKVRGREAEKRMESMIRLDD
        ILHFPK TFIHFFLPRRP  LK+R KS+PGK++GRWWAFGKVGPIGCLHSS+ T+EERN+VRGR A KR+ES IRLDD
Subjt:  ILHFPKITFIHFFLPRRPRGLKQRSKSKPGKDQGRWWAFGKVGPIGCLHSSEDTKEERNKVRGREAEKRMESMIRLDD

A0A5N6L7B4 Uncharacterized protein2.3e-5768.54Show/hide
Query:  MGQRIKRFDFVSWDPPQFWFESRVTGDYPARFGEHFESALVNRSPPY-QERSGSSHGGVAIDSIYYYGKSL---------------------------CI
        MGQRIK FDFV+ DPPQ  FESRV GDYPARFGEHF+SALVN SPP  QERSGSSHGGV IDSIYYYGKS+                           CI
Subjt:  MGQRIKRFDFVSWDPPQFWFESRVTGDYPARFGEHFESALVNRSPPY-QERSGSSHGGVAIDSIYYYGKSL---------------------------CI

Query:  ILHFPKITFIHFFLPRRPRGLKQRSKSKPGKDQGRWWAFGKVGPIGCLHSSEDTKEERNKVRGREAEKRMESMIRLDD
        ILHFPK TFIHFFLPRRPR  K+R KS+PGK +G+WWAFGKVGPIGCLHSS+ T+EERN+VRGR A KR+ES IRLDD
Subjt:  ILHFPKITFIHFFLPRRPRGLKQRSKSKPGKDQGRWWAFGKVGPIGCLHSSEDTKEERNKVRGREAEKRMESMIRLDD

A0A5N6N4G2 Uncharacterized protein2.3e-5768.54Show/hide
Query:  MGQRIKRFDFVSWDPPQFWFESRVTGDYPARFGEHFESALVNRSPPY-QERSGSSHGGVAIDSIYYYGKSL---------------------------CI
        MGQRIK FDFV+ DPPQ  FESRV GDYPARFGEHF+SALVN SPP  QERSGSSHGGV IDSIYYYGKS+                           CI
Subjt:  MGQRIKRFDFVSWDPPQFWFESRVTGDYPARFGEHFESALVNRSPPY-QERSGSSHGGVAIDSIYYYGKSL---------------------------CI

Query:  ILHFPKITFIHFFLPRRPRGLKQRSKSKPGKDQGRWWAFGKVGPIGCLHSSEDTKEERNKVRGREAEKRMESMIRLDD
        ILHFPK TFIHFFLPRRPR  K+R KS+PGK +G+WWAFGKVGPIGCLHSS+ T+EERN+VRGR A KR+ES IRLDD
Subjt:  ILHFPKITFIHFFLPRRPRGLKQRSKSKPGKDQGRWWAFGKVGPIGCLHSSEDTKEERNKVRGREAEKRMESMIRLDD

A0A6D2JSD1 Ribosomal_L16 domain-containing protein1.0e-5264.25Show/hide
Query:  MGQRIKRFDFVSWDPPQFWFESRVTGDYPARFGEHFESALVNRSPPY-QERSGSSHGGVAIDSIYYYGKSL---------------------------CI
        MGQRIKR DF S DPPQ  FESRV GDYPARFGEHF   LVN SPP  Q+RSGS +GGV IDSIYYYGK +                           CI
Subjt:  MGQRIKRFDFVSWDPPQFWFESRVTGDYPARFGEHFESALVNRSPPY-QERSGSSHGGVAIDSIYYYGKSL---------------------------CI

Query:  ILHFPKITFIHFFLPRRPRGLKQRSKSKPGKDQGRWW-AFGKVGPIGCLHSSEDTKEERNKVRGREAEKRMESMIRLDD
        ILHFPK TFIHFFLPRRPR LK+R K++PGK++G+WW  FGK GPIGCLHSS+DT+EERN+VRGR A KR+ES IRLDD
Subjt:  ILHFPKITFIHFFLPRRPRGLKQRSKSKPGKDQGRWW-AFGKVGPIGCLHSSEDTKEERNKVRGREAEKRMESMIRLDD

R4IUT2 Ribosomal_S3_C domain-containing protein2.8e-5566.85Show/hide
Query:  MGQRIKRFDFVSWDPPQFWFESRVTGDYPARFGEHFESALVNRSPPY-QERSGSSHGGVAIDSIYYYGKSL---------------------------CI
        MGQRIKRFDFVS D PQ  FESRV GDYPARFGEHF SALVN SP   QERSG SHGGV IDSIYYYGK +                           CI
Subjt:  MGQRIKRFDFVSWDPPQFWFESRVTGDYPARFGEHFESALVNRSPPY-QERSGSSHGGVAIDSIYYYGKSL---------------------------CI

Query:  ILHFPKITFIHFFLPRRPRGLKQRSKSKPGKDQGRWWAFGKVGPIGCLHSSEDTKEERNKVRGREAEKRMESMIRLDD
        ++HFPK TFIHFFLPRRPR LK+R KS+PGK++GRWWAFGKVGPIGCLHSS   +EERN+VRGR A KR+ES IRLDD
Subjt:  ILHFPKITFIHFFLPRRPRGLKQRSKSKPGKDQGRWWAFGKVGPIGCLHSSEDTKEERNKVRGREAEKRMESMIRLDD

SwissProt top hitse value%identityAlignment
P27754 Ribosomal protein S3, mitochondrial5.8e-2976.25Show/hide
Query:  CIILHFPKITFIHFFLPRRPRGLKQRSKSKPGKDQGRWWAFGKVGPIGCLHSSEDTKEERNKVRGREAEKRMESMIRLDD
        CIILHFPK TFIHFFLPRRPR LK+  KS+PGK++ RWW FGKVGPIGCLHS++DT+EERN+V GR A KR+ES IRLDD
Subjt:  CIILHFPKITFIHFFLPRRPRGLKQRSKSKPGKDQGRWWAFGKVGPIGCLHSSEDTKEERNKVRGREAEKRMESMIRLDD

P27928 Ribosomal protein S3, mitochondrial1.8e-3061.95Show/hide
Query:  SIYYYGKSL---------------------------CIILHFPKITFIHFFLPRRPRGLKQRSKSKPGKDQGRWWAFGKVGPIGCLHSSEDTKEERNKVR
        S YYYGKSL                           CIILHFPK TFIHFFLPRRP  LK+R KS+PGKD+GRWWAFGKVGPIGCLHSSE T+EERN+VR
Subjt:  SIYYYGKSL---------------------------CIILHFPKITFIHFFLPRRPRGLKQRSKSKPGKDQGRWWAFGKVGPIGCLHSSEDTKEERNKVR

Query:  GREAEKRMESMIR
        GR A KR+ES+ R
Subjt:  GREAEKRMESMIR

P46773 Ribosomal protein S3, mitochondrial1.8e-3058.2Show/hide
Query:  PARFGEHFESALVNRSPPYQERSGSSH-GGVAIDSIYYYGKSL--CIILHFPKITFIHFFLPRRPRGLKQRSKSKPGKDQGRWWAFGKVGPIGCLHSSED
        P+RF +++    +     YQ+ +  S+   +   +I  +G  L  CIILHFPK TFIHFFLPRRP  LK+R KS+PGKD+GRWWAFGKVGPIGCLHSSE 
Subjt:  PARFGEHFESALVNRSPPYQERSGSSH-GGVAIDSIYYYGKSL--CIILHFPKITFIHFFLPRRPRGLKQRSKSKPGKDQGRWWAFGKVGPIGCLHSSED

Query:  TKEERNKVRGREAEKRMESMIR
        T+EERN+VRGR A KR+ES+ R
Subjt:  TKEERNKVRGREAEKRMESMIR

Q04716 Ribosomal protein S3, mitochondrial7.5e-2978.75Show/hide
Query:  CIILHFPKITFIHFFLPRRPRGLKQRSKSKPGKDQGRWWAFGKVGPIGCLHSSEDTKEERNKVRGREAEKRMESMIRLDD
        CIILHFPK TFIHFFLPRRPR LK+R KS+P K++GRW AFGKVGPIGCLHSS+ T+EERN+VRGR A KR+ES IRLDD
Subjt:  CIILHFPKITFIHFFLPRRPRGLKQRSKSKPGKDQGRWWAFGKVGPIGCLHSSEDTKEERNKVRGREAEKRMESMIRLDD

Q95749 Ribosomal protein S3, mitochondrial9.8e-2956.67Show/hide
Query:  FGEHFESALVNRSPPYQERSGSSHGGVAIDSIYYYGKSLCIILHFPKITFIHFFLPRRPRGLKQRSKSKPGKDQGRWW-AFGKVGPIGCLHSSEDTKEER
        F E++    V +    +   GS      +   +  G+  CIILHFPK TFIHFFLPRRPR LK+R K++PGK++GRWW  FGK GPI CLHSS+DT+EER
Subjt:  FGEHFESALVNRSPPYQERSGSSHGGVAIDSIYYYGKSLCIILHFPKITFIHFFLPRRPRGLKQRSKSKPGKDQGRWW-AFGKVGPIGCLHSSEDTKEER

Query:  NKVRGREAEKRMESMIRLDD
        N+VRGR A KR+ES IRLDD
Subjt:  NKVRGREAEKRMESMIRLDD

Arabidopsis top hitse value%identityAlignment
ATMG00090.1 structural constituent of ribosome;protein binding1.1e-3056.56Show/hide
Query:  ARFGEHFESALVNRSPPYQERSGSSHGGVAIDSIYYYGKSLCIILHFPKITFIHFFLPRRPRGLKQRSKSKPGKDQGRWW-AFGKVGPIGCLHSSEDTKE
        +RF E++    V +    +   GS      +   +  G+  CIILHFPK TFIHFFLPRRPR LK+R K++PGK++GRWW  FGK GPI CLHSS+DT+E
Subjt:  ARFGEHFESALVNRSPPYQERSGSSHGGVAIDSIYYYGKSLCIILHFPKITFIHFFLPRRPRGLKQRSKSKPGKDQGRWW-AFGKVGPIGCLHSSEDTKE

Query:  ERNKVRGREAEKRMESMIRLDD
        ERN+VRGR A KR+ES IRLDD
Subjt:  ERNKVRGREAEKRMESMIRLDD


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGGGCAAAGGATCAAACGCTTTGACTTTGTCTCCTGGGATCCCCCACAGTTTTGGTTTGAGAGCCGTGTGACGGGTGACTATCCAGCACGGTTCGGAGAGCACTTTGA
GTCTGCGTTGGTGAATAGAAGCCCCCCCTATCAAGAAAGAAGTGGCTCTTCCCACGGCGGAGTCGCCATTGACTCTATTTATTATTATGGTAAATCACTGTGTATTATTT
TACATTTTCCCAAAATCACATTCATTCATTTCTTTCTTCCCCGTCGACCACGAGGACTGAAACAACGCTCAAAATCCAAACCCGGAAAGGATCAGGGCCGATGGTGGGCA
TTTGGGAAAGTCGGGCCAATTGGGTGTCTTCATTCAAGTGAGGATACAAAAGAAGAACGAAACAAAGTGAGAGGCCGGGAGGCAGAGAAAAGAATGGAGTCGATGATCAG
GCTCGACGACTGA
mRNA sequenceShow/hide mRNA sequence
ATGGGGCAAAGGATCAAACGCTTTGACTTTGTCTCCTGGGATCCCCCACAGTTTTGGTTTGAGAGCCGTGTGACGGGTGACTATCCAGCACGGTTCGGAGAGCACTTTGA
GTCTGCGTTGGTGAATAGAAGCCCCCCCTATCAAGAAAGAAGTGGCTCTTCCCACGGCGGAGTCGCCATTGACTCTATTTATTATTATGGTAAATCACTGTGTATTATTT
TACATTTTCCCAAAATCACATTCATTCATTTCTTTCTTCCCCGTCGACCACGAGGACTGAAACAACGCTCAAAATCCAAACCCGGAAAGGATCAGGGCCGATGGTGGGCA
TTTGGGAAAGTCGGGCCAATTGGGTGTCTTCATTCAAGTGAGGATACAAAAGAAGAACGAAACAAAGTGAGAGGCCGGGAGGCAGAGAAAAGAATGGAGTCGATGATCAG
GCTCGACGACTGA
Protein sequenceShow/hide protein sequence
MGQRIKRFDFVSWDPPQFWFESRVTGDYPARFGEHFESALVNRSPPYQERSGSSHGGVAIDSIYYYGKSLCIILHFPKITFIHFFLPRRPRGLKQRSKSKPGKDQGRWWA
FGKVGPIGCLHSSEDTKEERNKVRGREAEKRMESMIRLDD