; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

CmoCh12G008190 (gene) of Cucurbita moschata (Rifu) v1 genome

Gene IDCmoCh12G008190
OrganismCucurbita moschata Rifu (Cucurbita moschata (Rifu) v1)
Descriptionhistone H2B-like
Genome locationCmo_Chr12:7373789..7375363
RNA-Seq ExpressionCmoCh12G008190
SyntenyCmoCh12G008190
Gene Ontology termsGO:0000786 - nucleosome (cellular component)
GO:0005634 - nucleus (cellular component)
GO:0003677 - DNA binding (molecular function)
GO:0046982 - protein heterodimerization activity (molecular function)
InterPro domainsIPR000558 - Histone H2B
IPR009072 - Histone-fold


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG7037380.1 Histone H2B.2, partial [Cucurbita argyrosperma subsp. argyrosperma]4.0e-6269.42Show/hide
Query:  MPPRRSRRIVGSVVRTTTKVVEETVHVAVVEGESQDVTQEPATAETGGDGVFRRTIPVEDPQTSPVWGDVKLTRPVDSTSEVTEDKDVTGKMESKARDGS
        MPPRRSRRIVGSVVRTTTKVVEETVHVAVVEGESQDVT+EPATAETGGDGVFRRTIPVEDPQTSPVWGDVKLTRPVDSTSEVTEDKDVTGKMESKAR+  
Subjt:  MPPRRSRRIVGSVVRTTTKVVEETVHVAVVEGESQDVTQEPATAETGGDGVFRRTIPVEDPQTSPVWGDVKLTRPVDSTSEVTEDKDVTGKMESKARDGS

Query:  AEAGASGGGDIRASHGDFEQFDERHLRRPQSSPNTQASPNNIQNNSLTTTNSNNVWIMIGGQTLSSREIQGAVKLVFPGELGKHAVAEGTKAVSTYVSYD
                                                                   GGQTLSSREIQGAVKLVFPGELGKHAVAEGTKAVSTYVSYD
Subjt:  AEAGASGGGDIRASHGDFEQFDERHLRRPQSSPNTQASPNNIQNNSLTTTNSNNVWIMIGGQTLSSREIQGAVKLVFPGELGKHAVAEGTKAVSTYVSYD

Query:  HRRTQP
        HRRTQP
Subjt:  HRRTQP

XP_022937552.1 histone H2B.6-like isoform X1 [Cucurbita moschata]2.7e-6670.98Show/hide
Query:  MPPRRSRRIVGSVVRTTTKVVEETVHVAVVEGESQDVTQEPATAETGGDGVFRRTIPVEDPQTSPVWGDVKLTRPVDSTSEVTEDKDVTGKMESKARDGS
        MPPRRSRRIVGSVVRTTTKVVEETVHVAVVEGESQDVTQEPATAETGGDGVFRRTIPVEDPQTSPVWGDVKLTRPVDSTSEVTEDKDVTGKMESKARDG 
Subjt:  MPPRRSRRIVGSVVRTTTKVVEETVHVAVVEGESQDVTQEPATAETGGDGVFRRTIPVEDPQTSPVWGDVKLTRPVDSTSEVTEDKDVTGKMESKARDGS

Query:  AEA--------------GASGGGDIRASHGDFEQFDERHLRRPQSSPNTQASP--NNIQNNSL--TTTNSNNVWIMIGGQTLSSREIQGAVKLVFPGELG
         E+                SGGG        F+   + H   P+   + QA    NN+ N+        +  +    GGQTLSSREIQGAVKLVFPGELG
Subjt:  AEA--------------GASGGGDIRASHGDFEQFDERHLRRPQSSPNTQASP--NNIQNNSL--TTTNSNNVWIMIGGQTLSSREIQGAVKLVFPGELG

Query:  KHAVAEGTKAVSTYVSYDHRRTQP
        KHAVAEGTKAVSTYVSYDHRRTQP
Subjt:  KHAVAEGTKAVSTYVSYDHRRTQP

XP_022937553.1 histone H2B.1-like isoform X2 [Cucurbita moschata]2.2e-4497.09Show/hide
Query:  MPPRRSRRIVGSVVRTTTKVVEETVHVAVVEGESQDVTQEPATAETGGDGVFRRTIPVEDPQTSPVWGDVKLTRPVDSTSEVTEDKDVTGKMESKARDGS
        MPPRRSRRIVGSVVRTTTKVVEETVHVAVVEGESQDVTQEPATAETGGDGVFRRTIPVEDPQTSPVWGDVKLTRPVDSTSEVTEDKDVTGKMESKARDG 
Subjt:  MPPRRSRRIVGSVVRTTTKVVEETVHVAVVEGESQDVTQEPATAETGGDGVFRRTIPVEDPQTSPVWGDVKLTRPVDSTSEVTEDKDVTGKMESKARDGS

Query:  AEA
         E+
Subjt:  AEA

XP_022969528.1 histone H2B, gonadal-like isoform X1 [Cucurbita maxima]2.6e-6164.22Show/hide
Query:  MPPRRSRRIVGSVVRTTTKVVEETVHVAVVEGESQDVTQEPATAETGGDGVFRRTIPVEDPQTSPVWGDVKLTRPVDSTSEVTEDKDVTGKMESKARDGS
        MPPRRSRRIVGSVVRTTTKVVEETVHVAVVEGESQD+TQEPATAETGGD VFRRTI VEDP+TS VWGDVKLTRPVDSTSEVTEDKDVTGKMESK R+G 
Subjt:  MPPRRSRRIVGSVVRTTTKVVEETVHVAVVEGESQDVTQEPATAETGGDGVFRRTIPVEDPQTSPVWGDVKLTRPVDSTSEVTEDKDVTGKMESKARDGS

Query:  AEAGASGGGDIRASHGDFEQFDERHLRRPQS------------------------SPNTQASPNNIQNNSL--TTTNSNNVWIMIGGQTLSSREIQGAVK
                  +R S    E+  ER +++ +S                        S       NN+ N+        +  +    GGQTLSSREIQGAVK
Subjt:  AEAGASGGGDIRASHGDFEQFDERHLRRPQS------------------------SPNTQASPNNIQNNSL--TTTNSNNVWIMIGGQTLSSREIQGAVK

Query:  LVFPGELGKHAVAEGTKAVSTYVSYDHRRTQP
        LVFPGELGKHAVAEGTKAVSTYVSYDHRRTQP
Subjt:  LVFPGELGKHAVAEGTKAVSTYVSYDHRRTQP

XP_023537504.1 histone H2B-like [Cucurbita pepo subsp. pepo]4.3e-6469.2Show/hide
Query:  MPPRRSRRIVGSVVRTTTKVVEETVHVAVVEGESQDVTQEPATAETGGDGVFRRTIPVEDPQTSPVWGDVKLTRPVDSTSEVTEDKDVTGKMESKARDGS
        MPPRRSRRIVGSVVRTTTKVVEETVHVAVVEGESQDVTQEPATAETGGDGVFRR IPVEDPQTSPVWGDVKLTRPVDSTSEVTEDKDVTGKMESKAR+G 
Subjt:  MPPRRSRRIVGSVVRTTTKVVEETVHVAVVEGESQDVTQEPATAETGGDGVFRRTIPVEDPQTSPVWGDVKLTRPVDSTSEVTEDKDVTGKMESKARDGS

Query:  AEAGAS--------------GGGDIRASHGDFEQFDERHLRRPQSSPNTQASP--NNIQNNSL--TTTNSNNVWIMIGGQTLSSREIQGAVKLVFPGELG
         E+                 GGG        F    + H   P+   + QA    NN+ N+        +  +    GGQTLSSREIQGAVKLVFPGELG
Subjt:  AEAGAS--------------GGGDIRASHGDFEQFDERHLRRPQSSPNTQASP--NNIQNNSL--TTTNSNNVWIMIGGQTLSSREIQGAVKLVFPGELG

Query:  KHAVAEGTKAVSTYVSYDHRRTQP
        KHAVAEGTKAVSTYVSYDHRRT+P
Subjt:  KHAVAEGTKAVSTYVSYDHRRTQP

TrEMBL top hitse value%identityAlignment
A0A0A0LSH9 Histone domain-containing protein5.3e-3649.16Show/hide
Query:  MPPRRSRRIVGSVVRTTTKVVEETVHVAVVEGESQDVTQEPATAET--GGDGVFRRTIPVED-------PQTSPVWGDVKLTRPVDSTSEVTEDKDVTGK
        MPPRRSRR+VGSVVRTTT+VVEETV VAVVE ESQD+TQEP  AET  GG  +FRRT+PVE+       P + PV  D +L R  DSTS++TED  VT +
Subjt:  MPPRRSRRIVGSVVRTTTKVVEETVHVAVVEGESQDVTQEPATAET--GGDGVFRRTIPVED-------PQTSPVWGDVKLTRPVDSTSEVTEDKDVTGK

Query:  MESKAR--------------------DGSAEAGASGGGDIRASHGDFEQFDERHLRRPQSSPNTQAS--PNNIQNNSL--TTTNSNNVWIMIGGQTLSSR
        ME K R                    +G   +  SGGG  R  +  +  F       P+   + QA    NN  N+        +  +    GG TLSSR
Subjt:  MESKAR--------------------DGSAEAGASGGGDIRASHGDFEQFDERHLRRPQSSPNTQAS--PNNIQNNSL--TTTNSNNVWIMIGGQTLSSR

Query:  EIQGAVKLVFPGELGKHAVAEGTKAVSTYVSYDHRRTQ
        EIQGAV+LV PGELGKHA+AEGTKAVS YVSY +R T+
Subjt:  EIQGAVKLVFPGELGKHAVAEGTKAVSTYVSYDHRRTQ

A0A6J1FBI7 histone H2B.6-like isoform X11.3e-6670.98Show/hide
Query:  MPPRRSRRIVGSVVRTTTKVVEETVHVAVVEGESQDVTQEPATAETGGDGVFRRTIPVEDPQTSPVWGDVKLTRPVDSTSEVTEDKDVTGKMESKARDGS
        MPPRRSRRIVGSVVRTTTKVVEETVHVAVVEGESQDVTQEPATAETGGDGVFRRTIPVEDPQTSPVWGDVKLTRPVDSTSEVTEDKDVTGKMESKARDG 
Subjt:  MPPRRSRRIVGSVVRTTTKVVEETVHVAVVEGESQDVTQEPATAETGGDGVFRRTIPVEDPQTSPVWGDVKLTRPVDSTSEVTEDKDVTGKMESKARDGS

Query:  AEA--------------GASGGGDIRASHGDFEQFDERHLRRPQSSPNTQASP--NNIQNNSL--TTTNSNNVWIMIGGQTLSSREIQGAVKLVFPGELG
         E+                SGGG        F+   + H   P+   + QA    NN+ N+        +  +    GGQTLSSREIQGAVKLVFPGELG
Subjt:  AEA--------------GASGGGDIRASHGDFEQFDERHLRRPQSSPNTQASP--NNIQNNSL--TTTNSNNVWIMIGGQTLSSREIQGAVKLVFPGELG

Query:  KHAVAEGTKAVSTYVSYDHRRTQP
        KHAVAEGTKAVSTYVSYDHRRTQP
Subjt:  KHAVAEGTKAVSTYVSYDHRRTQP

A0A6J1FGB7 histone H2B.1-like isoform X21.1e-4497.09Show/hide
Query:  MPPRRSRRIVGSVVRTTTKVVEETVHVAVVEGESQDVTQEPATAETGGDGVFRRTIPVEDPQTSPVWGDVKLTRPVDSTSEVTEDKDVTGKMESKARDGS
        MPPRRSRRIVGSVVRTTTKVVEETVHVAVVEGESQDVTQEPATAETGGDGVFRRTIPVEDPQTSPVWGDVKLTRPVDSTSEVTEDKDVTGKMESKARDG 
Subjt:  MPPRRSRRIVGSVVRTTTKVVEETVHVAVVEGESQDVTQEPATAETGGDGVFRRTIPVEDPQTSPVWGDVKLTRPVDSTSEVTEDKDVTGKMESKARDGS

Query:  AEA
         E+
Subjt:  AEA

A0A6J1I190 histone H2B, gonadal-like isoform X11.3e-6164.22Show/hide
Query:  MPPRRSRRIVGSVVRTTTKVVEETVHVAVVEGESQDVTQEPATAETGGDGVFRRTIPVEDPQTSPVWGDVKLTRPVDSTSEVTEDKDVTGKMESKARDGS
        MPPRRSRRIVGSVVRTTTKVVEETVHVAVVEGESQD+TQEPATAETGGD VFRRTI VEDP+TS VWGDVKLTRPVDSTSEVTEDKDVTGKMESK R+G 
Subjt:  MPPRRSRRIVGSVVRTTTKVVEETVHVAVVEGESQDVTQEPATAETGGDGVFRRTIPVEDPQTSPVWGDVKLTRPVDSTSEVTEDKDVTGKMESKARDGS

Query:  AEAGASGGGDIRASHGDFEQFDERHLRRPQS------------------------SPNTQASPNNIQNNSL--TTTNSNNVWIMIGGQTLSSREIQGAVK
                  +R S    E+  ER +++ +S                        S       NN+ N+        +  +    GGQTLSSREIQGAVK
Subjt:  AEAGASGGGDIRASHGDFEQFDERHLRRPQS------------------------SPNTQASPNNIQNNSL--TTTNSNNVWIMIGGQTLSSREIQGAVK

Query:  LVFPGELGKHAVAEGTKAVSTYVSYDHRRTQP
        LVFPGELGKHAVAEGTKAVSTYVSYDHRRTQP
Subjt:  LVFPGELGKHAVAEGTKAVSTYVSYDHRRTQP

A0A6J1I2V8 histone H2B.4-like isoform X27.9e-4074.81Show/hide
Query:  MPPRRSRRIVGSVVRTTTKVVEETVHVAVVEGESQDVTQEPATAETGGDGVFRRTIPVEDPQTSPVWGDVKLTRPVDSTSEVTEDKDVTGKMESKARDGS
        MPPRRSRRIVGSVVRTTTKVVEETVHVAVVEGESQD+TQEPATAETGGD VFRRTI VEDP+TS VWGDVKLTRPVDSTSEVTEDKDVTGKMESK R+G 
Subjt:  MPPRRSRRIVGSVVRTTTKVVEETVHVAVVEGESQDVTQEPATAETGGDGVFRRTIPVEDPQTSPVWGDVKLTRPVDSTSEVTEDKDVTGKMESKARDGS

Query:  AEAGASGGGDIRASHGDFEQFDERHLRRPQS
                  +R S    E+  ER +++ +S
Subjt:  AEAGASGGGDIRASHGDFEQFDERHLRRPQS

SwissProt top hitse value%identityAlignment
P04255 Histone H2B 16.5e-0772.22Show/hide
Query:  TLSSREIQGAVKLVFPGELGKHAVAEGTKAVSTYVS
        T+SSREIQ AV+L+ PGEL KHAV+EGTKAV+ Y S
Subjt:  TLSSREIQGAVKLVFPGELGKHAVAEGTKAVSTYVS

Q27484 Probable histone H2B 36.5e-0772.22Show/hide
Query:  TLSSREIQGAVKLVFPGELGKHAVAEGTKAVSTYVS
        T+SSREIQ AV+L+ PGEL KHAV+EGTKAV+ Y S
Subjt:  TLSSREIQGAVKLVFPGELGKHAVAEGTKAVSTYVS

Q27876 Probable histone H2B 46.5e-0772.22Show/hide
Query:  TLSSREIQGAVKLVFPGELGKHAVAEGTKAVSTYVS
        T+SSREIQ AV+L+ PGEL KHAV+EGTKAV+ Y S
Subjt:  TLSSREIQGAVKLVFPGELGKHAVAEGTKAVSTYVS

Q27894 Histone H2B 26.5e-0772.22Show/hide
Query:  TLSSREIQGAVKLVFPGELGKHAVAEGTKAVSTYVS
        T+SSREIQ AV+L+ PGEL KHAV+EGTKAV+ Y S
Subjt:  TLSSREIQGAVKLVFPGELGKHAVAEGTKAVSTYVS

Q9SGE3 Histone H2B.25.3e-0969.05Show/hide
Query:  QTLSSREIQGAVKLVFPGELGKHAVAEGTKAVSTYVSYDHRR
        +TLSSREI+ AV+LV PGEL +HAVAEG+KAVS +V YD R+
Subjt:  QTLSSREIQGAVKLVFPGELGKHAVAEGTKAVSTYVSYDHRR

Arabidopsis top hitse value%identityAlignment
AT1G07790.1 Histone superfamily protein2.3e-0769.44Show/hide
Query:  TLSSREIQGAVKLVFPGELGKHAVAEGTKAVSTYVS
        T++SREIQ AV+LV PGEL KHAV+EGTKAV+ + S
Subjt:  TLSSREIQGAVKLVFPGELGKHAVAEGTKAVSTYVS

AT1G08170.1 Histone superfamily protein3.8e-1069.05Show/hide
Query:  QTLSSREIQGAVKLVFPGELGKHAVAEGTKAVSTYVSYDHRR
        +TLSSREI+ AV+LV PGEL +HAVAEG+KAVS +V YD R+
Subjt:  QTLSSREIQGAVKLVFPGELGKHAVAEGTKAVSTYVSYDHRR

AT2G28720.1 Histone superfamily protein2.3e-0769.44Show/hide
Query:  TLSSREIQGAVKLVFPGELGKHAVAEGTKAVSTYVS
        T++SREIQ AV+LV PGEL KHAV+EGTKAV+ + S
Subjt:  TLSSREIQGAVKLVFPGELGKHAVAEGTKAVSTYVS

AT2G37470.1 Histone superfamily protein2.3e-0769.44Show/hide
Query:  TLSSREIQGAVKLVFPGELGKHAVAEGTKAVSTYVS
        T++SREIQ AV+LV PGEL KHAV+EGTKAV+ + S
Subjt:  TLSSREIQGAVKLVFPGELGKHAVAEGTKAVSTYVS

AT3G46030.1 Histone superfamily protein2.3e-0769.44Show/hide
Query:  TLSSREIQGAVKLVFPGELGKHAVAEGTKAVSTYVS
        T++SREIQ AV+LV PGEL KHAV+EGTKAV+ + S
Subjt:  TLSSREIQGAVKLVFPGELGKHAVAEGTKAVSTYVS


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGCCGCCGAGGCGATCCCGTAGAATTGTCGGTTCTGTCGTCCGGACAACCACCAAGGTAGTGGAAGAAACTGTGCATGTGGCTGTGGTGGAGGGAGAGAGCCAGGATGT
TACTCAAGAGCCAGCAACGGCGGAAACCGGCGGCGATGGAGTGTTTCGGAGGACTATTCCGGTGGAAGACCCCCAAACTTCGCCGGTGTGGGGAGATGTCAAGCTGACAA
GGCCTGTAGATTCCACCTCAGAGGTCACGGAGGACAAGGATGTGACGGGGAAGATGGAATCTAAAGCCAGGGATGGTAGTGCTGAAGCAGGTGCATCCGGAGGTGGGGAT
ATCAGGGCAAGCCATGGTGATTTTGAACAATTTGATGAACGACATCTGAGGAGGCCACAAAGCTCTCCAAATACACAGGCAAGCCCTAATAATATTCAAAATAACTCCTT
AACAACGACCAATTCTAACAATGTTTGGATTATGATAGGCGGGCAGACGCTGTCATCAAGGGAGATACAGGGGGCGGTGAAGCTGGTTTTCCCGGGAGAGCTAGGGAAGC
ACGCCGTTGCCGAGGGGACTAAAGCGGTGTCAACTTATGTCTCTTATGATCATAGGAGAACCCAACCATAG
mRNA sequenceShow/hide mRNA sequence
ATGCCGCCGAGGCGATCCCGTAGAATTGTCGGTTCTGTCGTCCGGACAACCACCAAGGTAGTGGAAGAAACTGTGCATGTGGCTGTGGTGGAGGGAGAGAGCCAGGATGT
TACTCAAGAGCCAGCAACGGCGGAAACCGGCGGCGATGGAGTGTTTCGGAGGACTATTCCGGTGGAAGACCCCCAAACTTCGCCGGTGTGGGGAGATGTCAAGCTGACAA
GGCCTGTAGATTCCACCTCAGAGGTCACGGAGGACAAGGATGTGACGGGGAAGATGGAATCTAAAGCCAGGGATGGTAGTGCTGAAGCAGGTGCATCCGGAGGTGGGGAT
ATCAGGGCAAGCCATGGTGATTTTGAACAATTTGATGAACGACATCTGAGGAGGCCACAAAGCTCTCCAAATACACAGGCAAGCCCTAATAATATTCAAAATAACTCCTT
AACAACGACCAATTCTAACAATGTTTGGATTATGATAGGCGGGCAGACGCTGTCATCAAGGGAGATACAGGGGGCGGTGAAGCTGGTTTTCCCGGGAGAGCTAGGGAAGC
ACGCCGTTGCCGAGGGGACTAAAGCGGTGTCAACTTATGTCTCTTATGATCATAGGAGAACCCAACCATAG
Protein sequenceShow/hide protein sequence
MPPRRSRRIVGSVVRTTTKVVEETVHVAVVEGESQDVTQEPATAETGGDGVFRRTIPVEDPQTSPVWGDVKLTRPVDSTSEVTEDKDVTGKMESKARDGSAEAGASGGGD
IRASHGDFEQFDERHLRRPQSSPNTQASPNNIQNNSLTTTNSNNVWIMIGGQTLSSREIQGAVKLVFPGELGKHAVAEGTKAVSTYVSYDHRRTQP