CuGenDBv2

Gene ID	CmoCh12G008280
Organism	Cucurbita moschata Rifu (Cucurbita moschata (Rifu) v1)
Description	Ribulose bisphosphate carboxylase large chain
Genome location	Cmo_Chr12:7523051..7529117
RNA-Seq Expression	CmoCh12G008280
Synteny	CmoCh12G008280
Gene Ontology terms	GO:0009853 - photorespiration (biological process) GO:0019253 - reductive pentose-phosphate cycle (biological process) GO:0030001 - metal ion transport (biological process) GO:0005840 - ribosome (cellular component) GO:0009536 - plastid (cellular component) GO:0016021 - integral component of membrane (cellular component) GO:0000287 - magnesium ion binding (molecular function) GO:0003723 - RNA binding (molecular function) GO:0004497 - monooxygenase activity (molecular function) GO:0016984 - ribulose-bisphosphate carboxylase activity (molecular function) GO:0046873 - metal ion transmembrane transporter activity (molecular function)
InterPro domains	NA

Homology

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GenBank top hits

e value

%identity

Alignment

DAD32965.1 TPA_asm: hypothetical protein HUJ06_011816 [Nelumbo nucifera]

4.5e-17

97.96

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Query:  MSNQLLRLNAFRGEPASSGFEWHFTPNHNSSADSSTSVGSDLHLVSPKL
        MS+QLLRLNAFRGEPASSGFEWHFTPNHNSSADSSTSVGSDLHLVSPKL
Subjt:  MSNQLLRLNAFRGEPASSGFEWHFTPNHNSSADSSTSVGSDLHLVSPKL

KMT19416.1 hypothetical protein BVRB_1g012650 [Beta vulgaris subsp. vulgaris]

4.5e-17

97.96

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Query:  MSNQLLRLNAFRGEPASSGFEWHFTPNHNSSADSSTSVGSDLHLVSPKL
        MS+QLLRLNAFRGEPASSGFEWHFTPNHNSSADSSTSVGSDLHLVSPKL
Subjt:  MSNQLLRLNAFRGEPASSGFEWHFTPNHNSSADSSTSVGSDLHLVSPKL

KYP43983.1 Uncharacterized protein ORF91 [Cajanus cajan]

2.7e-17

75.68

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Query:  MSNQLLRLNAFRGEPASSGFEWHFTPNHNSSADSSTSVGSDLHLVSPKL-LYAFSIQTNKLLYASCIHDLFPIP
        MS+QLLRLNAFRGEPASSGFEWHFTPNHNSSADSSTSVGSDLHLVSPKL    FS+    LL    IH  F +P
Subjt:  MSNQLLRLNAFRGEPASSGFEWHFTPNHNSSADSSTSVGSDLHLVSPKL-LYAFSIQTNKLLYASCIHDLFPIP

QCD92443.1 small subunit ribosomal protein S7 [Vigna unguiculata]

3.1e-18

66.33

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Query:  MSNQLLRLNAFRGEPASSGFEWHFTPNHNSSADSSTSVGSDLHLVSPKL-LYAFSIQTNKLLYASCIHDLFPIP-------LPLPFS-ITGSTKILNS
        MS+QLLRLNAFRGEPASSGFEWHFTPNHNSSADSSTSVGSDLHLVSPKL    FS+    LL    IH  F +P         L +S I+GST I NS
Subjt:  MSNQLLRLNAFRGEPASSGFEWHFTPNHNSSADSSTSVGSDLHLVSPKL-LYAFSIQTNKLLYASCIHDLFPIP-------LPLPFS-ITGSTKILNS

THG12336.1 hypothetical protein TEA_001523 [Camellia sinensis var. sinensis]

4.5e-17

97.96

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Query:  MSNQLLRLNAFRGEPASSGFEWHFTPNHNSSADSSTSVGSDLHLVSPKL
        MS+QLLRLNAFRGEPASSGFEWHFTPNHNSSADSSTSVGSDLHLVSPKL
Subjt:  MSNQLLRLNAFRGEPASSGFEWHFTPNHNSSADSSTSVGSDLHLVSPKL

TrEMBL top hits

e value

%identity

Alignment

A0A151RNA8 Uncharacterized protein ORF91

1.3e-17

75.68

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Query:  MSNQLLRLNAFRGEPASSGFEWHFTPNHNSSADSSTSVGSDLHLVSPKL-LYAFSIQTNKLLYASCIHDLFPIP
        MS+QLLRLNAFRGEPASSGFEWHFTPNHNSSADSSTSVGSDLHLVSPKL    FS+    LL    IH  F +P
Subjt:  MSNQLLRLNAFRGEPASSGFEWHFTPNHNSSADSSTSVGSDLHLVSPKL-LYAFSIQTNKLLYASCIHDLFPIP

A0A4D6LVH2 Ribosomal protein S7

1.5e-18

66.33

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Query:  MSNQLLRLNAFRGEPASSGFEWHFTPNHNSSADSSTSVGSDLHLVSPKL-LYAFSIQTNKLLYASCIHDLFPIP-------LPLPFS-ITGSTKILNS
        MS+QLLRLNAFRGEPASSGFEWHFTPNHNSSADSSTSVGSDLHLVSPKL    FS+    LL    IH  F +P         L +S I+GST I NS
Subjt:  MSNQLLRLNAFRGEPASSGFEWHFTPNHNSSADSSTSVGSDLHLVSPKL-LYAFSIQTNKLLYASCIHDLFPIP-------LPLPFS-ITGSTKILNS

A0A4S4E9Z7 Uncharacterized protein

2.2e-17

97.96

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Query:  MSNQLLRLNAFRGEPASSGFEWHFTPNHNSSADSSTSVGSDLHLVSPKL
        MS+QLLRLNAFRGEPASSGFEWHFTPNHNSSADSSTSVGSDLHLVSPKL
Subjt:  MSNQLLRLNAFRGEPASSGFEWHFTPNHNSSADSSTSVGSDLHLVSPKL

A0A4Y7JIL6 Uncharacterized protein

6.4e-17

95.92

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Query:  MSNQLLRLNAFRGEPASSGFEWHFTPNHNSSADSSTSVGSDLHLVSPKL
        MS++LLRLNAFRGEPASSGFEWHFTPNHNSSADSSTSVGSDLHLVSPKL
Subjt:  MSNQLLRLNAFRGEPASSGFEWHFTPNHNSSADSSTSVGSDLHLVSPKL

W9SBV7 Metal transporter Nramp5

8.3e-17

95.92

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Query:  MSNQLLRLNAFRGEPASSGFEWHFTPNHNSSADSSTSVGSDLHLVSPKL
        MS+QLL LNAFRGEPASSGFEWHFTPNHNSSADSSTSVGSDLHLVSPKL
Subjt:  MSNQLLRLNAFRGEPASSGFEWHFTPNHNSSADSSTSVGSDLHLVSPKL

SwissProt top hits	e value	%identity	Alignment
No hits found

Arabidopsis top hits	e value	%identity	Alignment
No hits found

Sequences

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CDS sequence

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ATGTCCAATCAACTGCTGCGCCTCAACGCATTTCGGGGAGAACCAGCTAGCTCTGGGTTCGAGTGGCATTTCACCCCTAACCACAACTCATCCGCTGATTCTTCAACATC
AGTCGGTTCGGACCTCCACTTAGTTTCACCCAAGCTTCTATATGCTTTCTCAATTCAAACCAACAAATTACTTTATGCTTCTTGTATCCATGACTTATTTCCAATTCCGC
TTCCATTACCATTTTCCATCACTGGGAGTACGAAGATTTTAAACAGTCGGGGAAAAGACACTTCCCAATTGAAAAGAAAAAAGGAAGTCGGAAGAACCACACCAGCGTAC
TGTACTGAACTTTTCATTCGTCAGCCAAGGATTGTGATTGATGTTTCAGAGATGGCATCTTTATTTCAAAGATGGAATAAGATAGGTGTATTGAACAATGCAGAAATCAA
CACTCTGCAGAGGAGTAGTGTCCTTGCAGAGAAAAGAATTGGGAAGTTTTATGACAGAAAACATAGGTGCTCTTCGTATCATTCAATAGCCCAGCCTAATCACTATCTGA
ATAACTTTGCAACTGAACCGCTGTCCATTCTAGATGCCTTGGAACCAACCCCCATTGCAACAACCATATGGCTCTTGCACAATGAAGAAATTTGGATAACACCTACAGTG
TACATGATCTCAACCCTAATGGATGTTTTATATTCTTTGATATCAATTGACATTGTTTGGCAAATAAGTGTGCGATCTAAACAAGGCCAGGATGAAATTTCCACGTTAAG
AGTACTTTCTTTGCAGCTACTTTTGTACCTACAAAATATCTTCCACAGAGAGCCATTTGACAAGCATTTAGGATTTTTACCATGTCCTCCTCAACTACACATCTTAATAT
TTGATCTAGACCTAGCTTATTTAACTGTGGTTCATCCCAACTGTTGTGCAGTTGTACCAGGGTATTACAATTATGGATATCAAGTTATTGCTCTCCCTATGGTCAGACAG
GGTCTTCCTCGAATGATGGATACCTCTCTATCTGCCTTGCAATCTAGGATAATAAAACTAATTGTGAAGACAAATTTGTCCAGGACATCTTCTATCCTTCTTGCGAGCTT
GCTATGGACTTTTCTTCTAATTGCAATTTCAAGTAGCATCTTGCTTTTCAATAGGCCATTGCAGTTCTTTGGAAGTTCCACAATTTCACCTTTTCTTTACAAGGATGTCC
TTCAAGAACATTGA

mRNA sequence

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Protein sequence

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MSNQLLRLNAFRGEPASSGFEWHFTPNHNSSADSSTSVGSDLHLVSPKLLYAFSIQTNKLLYASCIHDLFPIPLPLPFSITGSTKILNSRGKDTSQLKRKKEVGRTTPAY
CTELFIRQPRIVIDVSEMASLFQRWNKIGVLNNAEINTLQRSSVLAEKRIGKFYDRKHRCSSYHSIAQPNHYLNNFATEPLSILDALEPTPIATTIWLLHNEEIWITPTV
YMISTLMDVLYSLISIDIVWQISVRSKQGQDEISTLRVLSLQLLLYLQNIFHREPFDKHLGFLPCPPQLHILIFDLDLAYLTVVHPNCCAVVPGYYNYGYQVIALPMVRQ
GLPRMMDTSLSALQSRIIKLIVKTNLSRTSSILLASLLWTFLLIAISSSILLFNRPLQFFGSSTISPFLYKDVLQEH

CmoCh12G008280 (gene) of Cucurbita moschata (Rifu) v1 genome