CuGenDBv2

Gene ID	CmoCh12G008430
Organism	Cucurbita moschata Rifu (Cucurbita moschata (Rifu) v1)
Description	nuclear pore complex protein NUP43
Genome location	Cmo_Chr12:7705988..7709525
RNA-Seq Expression	CmoCh12G008430
Synteny	CmoCh12G008430
Gene Ontology terms	GO:0031080 - nuclear pore outer ring (cellular component) GO:0005515 - protein binding (molecular function)
InterPro domains	IPR015943 - WD40/YVTN repeat-like-containing domain superfamily IPR036322 - WD40-repeat-containing domain superfamily

Homology

Show/hide homology

GenBank top hits

e value

%identity

Alignment

KAG6586038.1 Nuclear pore complex protein NUP43, partial [Cucurbita argyrosperma subsp. sororia]

6.5e-206

99.43

Show/hide

Query:  MAIVSPQQQPQIHRFPQFKYVDGVRWLPPLSAFGRFAVVALFDSDSDSSSIEIHSLTQNPLDMAPQSFWTSPSRISSLKTSQFYQNPLVFASTYTGSLHV
        MAIVSPQQQPQIHRFPQFKYVDGVRWLPPLSAFGRFAVVALFDSDSDSSSIEIHSLTQNPLDMAPQS WTSPSRISSLKTSQFYQNPLVFASTYTGSLHV
Subjt:  MAIVSPQQQPQIHRFPQFKYVDGVRWLPPLSAFGRFAVVALFDSDSDSSSIEIHSLTQNPLDMAPQSFWTSPSRISSLKTSQFYQNPLVFASTYTGSLHV

Query:  LSVEPMDASLDSELSVPEKVLHDRPISCVDVMDGGGECLTVAEDGRVNLVSVGESGLNYRRIFDSNGLVSYTAAKWASPTEFATGGCGFSLQWWDQRKPG
        LSVEPMDASLDSELSVPEKVLHDRPISCVDVMDGGGECLTVAEDGRVNLVSVGESGLNYRRIFDSNGLVSYTAAKWASPTEFATGGCGFSLQWWDQRKPG
Subjt:  LSVEPMDASLDSELSVPEKVLHDRPISCVDVMDGGGECLTVAEDGRVNLVSVGESGLNYRRIFDSNGLVSYTAAKWASPTEFATGGCGFSLQWWDQRKPG

Query:  GAVSQFKGDWASGIVHCIDIHPSRKHTCLAGGSFGTVFAWDLRWQQQPIILSGLEGSKTSNFSPCESEVWEVHYDPYIKSGNIGGMSSSQILPAMICSED
        GAVSQFKGDWASGIVHCIDIHPSRKHTCLAGGSFGT FAWDLRWQQQPIILSGLEGSKTSNFSPCESEVWEVHYDPYIKSGNIGGMSSSQILPAMICSED
Subjt:  GAVSQFKGDWASGIVHCIDIHPSRKHTCLAGGSFGTVFAWDLRWQQQPIILSGLEGSKTSNFSPCESEVWEVHYDPYIKSGNIGGMSSSQILPAMICSED

Query:  GIITSIEQGKQPVELLAEPCAINGFDIDRQHPSEVICNLEWESVAILSRP
        GIITSIEQGKQPVELLAEPCAINGFDIDRQHPSEVICNLEWESVAILSRP
Subjt:  GIITSIEQGKQPVELLAEPCAINGFDIDRQHPSEVICNLEWESVAILSRP

XP_022158135.1 nuclear pore complex protein NUP43 [Momordica charantia]

6.3e-193

93.45

Show/hide

Query:  MAIVSP-QQQPQIHRFPQFKYVDGVRWLPPLSAFGRFAVVALFDSDSDSSSIEIHSLTQNPLDMAPQSFWTSPSRISSLKTSQFYQNPLVFASTYTGSLH
        MAI+SP QQQPQIHRFP FKYVDGVRWLP LSAFGRFAV+A FDSDSDSSSIEIHS+TQN LD+AP S W SPSR+SSLKTSQ YQNPLVFASTYTGSLH
Subjt:  MAIVSP-QQQPQIHRFPQFKYVDGVRWLPPLSAFGRFAVVALFDSDSDSSSIEIHSLTQNPLDMAPQSFWTSPSRISSLKTSQFYQNPLVFASTYTGSLH

Query:  VLSVEPMDASLDSELSVPEKVLHDRPISCVDVMDGGGECLTVAEDGRVNLVSVGESGLNYRRIFDSNGLVSYTAAKWASPTEFATGGCGFSLQWWDQRKP
        VLSVEPMDASLDSEL+VPEK LHD PISCVDVMDGGGECLTVAEDGRVNLVSVGESGLNYRRIFDSNGLVSYTAAKWASPTEFATGGCGFSLQWWDQRKP
Subjt:  VLSVEPMDASLDSELSVPEKVLHDRPISCVDVMDGGGECLTVAEDGRVNLVSVGESGLNYRRIFDSNGLVSYTAAKWASPTEFATGGCGFSLQWWDQRKP

Query:  GGAVSQFKGDWASGIVHCIDIHPSRKHTCLAGGSFGTVFAWDLRWQQQPIILSGLEGSKTSNFSPCESEVWEVHYDPYIKSGNIGGMSSSQILPAMICSE
        GGAVSQFKGDWASGIVHCIDIHPSRKHTCLAGGSFGTVFAWDLRWQQQPIILSGLE SK SN SPCESEVWEVHYDPYIKS NIGGMSSSQILPAMICSE
Subjt:  GGAVSQFKGDWASGIVHCIDIHPSRKHTCLAGGSFGTVFAWDLRWQQQPIILSGLEGSKTSNFSPCESEVWEVHYDPYIKSGNIGGMSSSQILPAMICSE

Query:  DGIITSIEQGKQPVELLAEPCAINGFDIDRQHPSEVICNLEWESVAILSRP
        DGI+TS+EQGKQPVELLAEPCAINGFDIDRQHPSEVICNLEWESVAILSRP
Subjt:  DGIITSIEQGKQPVELLAEPCAINGFDIDRQHPSEVICNLEWESVAILSRP

XP_022937892.1 nuclear pore complex protein NUP43 [Cucurbita moschata]

2.6e-207

100

Show/hide

Query:  MAIVSPQQQPQIHRFPQFKYVDGVRWLPPLSAFGRFAVVALFDSDSDSSSIEIHSLTQNPLDMAPQSFWTSPSRISSLKTSQFYQNPLVFASTYTGSLHV
        MAIVSPQQQPQIHRFPQFKYVDGVRWLPPLSAFGRFAVVALFDSDSDSSSIEIHSLTQNPLDMAPQSFWTSPSRISSLKTSQFYQNPLVFASTYTGSLHV
Subjt:  MAIVSPQQQPQIHRFPQFKYVDGVRWLPPLSAFGRFAVVALFDSDSDSSSIEIHSLTQNPLDMAPQSFWTSPSRISSLKTSQFYQNPLVFASTYTGSLHV

Query:  LSVEPMDASLDSELSVPEKVLHDRPISCVDVMDGGGECLTVAEDGRVNLVSVGESGLNYRRIFDSNGLVSYTAAKWASPTEFATGGCGFSLQWWDQRKPG
        LSVEPMDASLDSELSVPEKVLHDRPISCVDVMDGGGECLTVAEDGRVNLVSVGESGLNYRRIFDSNGLVSYTAAKWASPTEFATGGCGFSLQWWDQRKPG
Subjt:  LSVEPMDASLDSELSVPEKVLHDRPISCVDVMDGGGECLTVAEDGRVNLVSVGESGLNYRRIFDSNGLVSYTAAKWASPTEFATGGCGFSLQWWDQRKPG

Query:  GAVSQFKGDWASGIVHCIDIHPSRKHTCLAGGSFGTVFAWDLRWQQQPIILSGLEGSKTSNFSPCESEVWEVHYDPYIKSGNIGGMSSSQILPAMICSED
        GAVSQFKGDWASGIVHCIDIHPSRKHTCLAGGSFGTVFAWDLRWQQQPIILSGLEGSKTSNFSPCESEVWEVHYDPYIKSGNIGGMSSSQILPAMICSED
Subjt:  GAVSQFKGDWASGIVHCIDIHPSRKHTCLAGGSFGTVFAWDLRWQQQPIILSGLEGSKTSNFSPCESEVWEVHYDPYIKSGNIGGMSSSQILPAMICSED

Query:  GIITSIEQGKQPVELLAEPCAINGFDIDRQHPSEVICNLEWESVAILSRP
        GIITSIEQGKQPVELLAEPCAINGFDIDRQHPSEVICNLEWESVAILSRP
Subjt:  GIITSIEQGKQPVELLAEPCAINGFDIDRQHPSEVICNLEWESVAILSRP

XP_022969681.1 nuclear pore complex protein NUP43 [Cucurbita maxima]

5.2e-203

97.71

Show/hide

Query:  MAIVSPQQQPQIHRFPQFKYVDGVRWLPPLSAFGRFAVVALFDSDSDSSSIEIHSLTQNPLDMAPQSFWTSPSRISSLKTSQFYQNPLVFASTYTGSLHV
        MAIVSPQQQPQIHRFPQFKY+DGVRWLPPLSAFGRFAVVALFDSDSDSSSIEIHSLTQNPLDMAPQS WTSPSRISSLKTSQFYQNPLVFASTYTGSLHV
Subjt:  MAIVSPQQQPQIHRFPQFKYVDGVRWLPPLSAFGRFAVVALFDSDSDSSSIEIHSLTQNPLDMAPQSFWTSPSRISSLKTSQFYQNPLVFASTYTGSLHV

Query:  LSVEPMDASLDSELSVPEKVLHDRPISCVDVMDGGGECLTVAEDGRVNLVSVGESGLNYRRIFDSNGLVSYTAAKWASPTEFATGGCGFSLQWWDQRKPG
        LSVEPMDASLDSELSVPEK+LHDRPISCVDVMD GGECLTVAEDGRVNLVSVGESGLNYRRIFDSNGLVSYTAAKWASPTEFATGGCGFSLQWWDQRKPG
Subjt:  LSVEPMDASLDSELSVPEKVLHDRPISCVDVMDGGGECLTVAEDGRVNLVSVGESGLNYRRIFDSNGLVSYTAAKWASPTEFATGGCGFSLQWWDQRKPG

Query:  GAVSQFKGDWASGIVHCIDIHPSRKHTCLAGGSFGTVFAWDLRWQQQPIILSGLEGSKTSNFSPCESEVWEVHYDPYIKSGNIGGMSSSQILPAMICSED
        GAV QFKGDWASGIVHC+DIHPSRKHTCLAGGSFGTVFAWDLRWQQQPIILSGLEGSKTSNFSPCESEVWEV YDPYIKSGNIGGMSSSQILPAMICSED
Subjt:  GAVSQFKGDWASGIVHCIDIHPSRKHTCLAGGSFGTVFAWDLRWQQQPIILSGLEGSKTSNFSPCESEVWEVHYDPYIKSGNIGGMSSSQILPAMICSED

Query:  GIITSIEQGKQPVELLAEPCAINGFDIDRQHPSEVICNLEWESVAILSRP
        GIITSIEQGKQPVELLAEPCAINGFDID QHPSEVICNLEWESVAILSRP
Subjt:  GIITSIEQGKQPVELLAEPCAINGFDIDRQHPSEVICNLEWESVAILSRP

XP_023538014.1 nuclear pore complex protein NUP43 [Cucurbita pepo subsp. pepo]

5.5e-205

98.86

Show/hide

Query:  MAIVSPQQQPQIHRFPQFKYVDGVRWLPPLSAFGRFAVVALFDSDSDSSSIEIHSLTQNPLDMAPQSFWTSPSRISSLKTSQFYQNPLVFASTYTGSLHV
        MAIVSPQQQPQIHRFPQFKYVDGVRWLPPLSAFGRFAVVALFDSDSDSSSIEIHSLTQNPLDMAPQS WTSPSR+SSLKTSQFYQNPLVFASTYTGSLHV
Subjt:  MAIVSPQQQPQIHRFPQFKYVDGVRWLPPLSAFGRFAVVALFDSDSDSSSIEIHSLTQNPLDMAPQSFWTSPSRISSLKTSQFYQNPLVFASTYTGSLHV

Query:  LSVEPMDASLDSELSVPEKVLHDRPISCVDVMDGGGECLTVAEDGRVNLVSVGESGLNYRRIFDSNGLVSYTAAKWASPTEFATGGCGFSLQWWDQRKPG
        LSVEPMDASLDSELSVPEKVLHDRPISCVDVMDGGGECLTVAEDGRVNLVSVGESGLNYRRIFDSNGLVSYTAAKWASPTEFATGGCGFSLQWWDQRKPG
Subjt:  LSVEPMDASLDSELSVPEKVLHDRPISCVDVMDGGGECLTVAEDGRVNLVSVGESGLNYRRIFDSNGLVSYTAAKWASPTEFATGGCGFSLQWWDQRKPG

Query:  GAVSQFKGDWASGIVHCIDIHPSRKHTCLAGGSFGTVFAWDLRWQQQPIILSGLEGSKTSNFSPCESEVWEVHYDPYIKSGNIGGMSSSQILPAMICSED
        GAVSQFKGDWASGIVHC+DIHPSRKHTCLAGGSFGTVFAWDLRWQQQPIILSGLEGSKTSNFSPCESEVWEVHYDPYIKSGNIGGMSSSQILPAMICSED
Subjt:  GAVSQFKGDWASGIVHCIDIHPSRKHTCLAGGSFGTVFAWDLRWQQQPIILSGLEGSKTSNFSPCESEVWEVHYDPYIKSGNIGGMSSSQILPAMICSED

Query:  GIITSIEQGKQPVELLAEPCAINGFDIDRQHPSEVICNLEWESVAILSRP
        GIITSIEQGKQPVELLAEPCAINGFDIDRQ PSEVICNLEWESVAILSRP
Subjt:  GIITSIEQGKQPVELLAEPCAINGFDIDRQHPSEVICNLEWESVAILSRP

TrEMBL top hits

e value

%identity

Alignment

A0A1S3BTA6 nuclear pore complex protein NUP43

1.3e-191

92.26

Show/hide

Query:  MAIVSPQQQPQIHRFPQFKYVDGVRWLPPLSAFGRFAVVALFDSDSDSSSIEIHSLTQNPLDMAPQSFWTSPSRISSLKTSQFYQNPLVFASTYTGSLHV
        MAI+SPQQQPQIHRFPQFKYVDGVRWLPPLSAF RFAV+ALFDSD DSSSIEIHSLTQNPLD+AP S W SPSR+SSLKTSQ +QNPLVFASTYTGSLHV
Subjt:  MAIVSPQQQPQIHRFPQFKYVDGVRWLPPLSAFGRFAVVALFDSDSDSSSIEIHSLTQNPLDMAPQSFWTSPSRISSLKTSQFYQNPLVFASTYTGSLHV

Query:  LSVEPMDASLDSELSVPEKVLHDRPISCVDVMDGGGECLTVAEDGRVNLVSVGESGLNYRRIFDSNGLVSYTAAKWASPTEFATGGCGFSLQWWDQRKPG
        LSVEPM+ASLDSELSVPEK+LHD PISCVDVMD GGECLTV+EDGRVNLVSVGESGLNYRRIFDSNGLVSY A KWASPTEF TGGCGFSLQWWDQRKPG
Subjt:  LSVEPMDASLDSELSVPEKVLHDRPISCVDVMDGGGECLTVAEDGRVNLVSVGESGLNYRRIFDSNGLVSYTAAKWASPTEFATGGCGFSLQWWDQRKPG

Query:  GAVSQFKGDWASGIVHCIDIHPSRKHTCLAGGSFGTVFAWDLRWQQQPIILSGLEGSKTSNFSPCESEVWEVHYDPYIKSGNIGGMSSSQILPAMICSED
        GAVSQFK DWASGIVHCIDIHPSRKHTCLAGGSFGTVFAWDLR QQQPIILSGLEG+KTSN SPCESEVWEVHYDPYIKSGN+GGMSS+QILPAMICSED
Subjt:  GAVSQFKGDWASGIVHCIDIHPSRKHTCLAGGSFGTVFAWDLRWQQQPIILSGLEGSKTSNFSPCESEVWEVHYDPYIKSGNIGGMSSSQILPAMICSED

Query:  GIITSIEQGKQPVELLAEPCAINGFDIDRQHPSEVICNLEWESVAILSR
        GI+TSIEQGK+PVELLAEPCAINGFDIDRQHPSEVICNLEWESVAILSR
Subjt:  GIITSIEQGKQPVELLAEPCAINGFDIDRQHPSEVICNLEWESVAILSR

A0A5D3BAS9 Nuclear pore complex protein NUP43

1.3e-191

92.26

Show/hide

Query:  MAIVSPQQQPQIHRFPQFKYVDGVRWLPPLSAFGRFAVVALFDSDSDSSSIEIHSLTQNPLDMAPQSFWTSPSRISSLKTSQFYQNPLVFASTYTGSLHV
        MAI+SPQQQPQIHRFPQFKYVDGVRWLPPLSAF RFAV+ALFDSD DSSSIEIHSLTQNPLD+AP S W SPSR+SSLKTSQ +QNPLVFASTYTGSLHV
Subjt:  MAIVSPQQQPQIHRFPQFKYVDGVRWLPPLSAFGRFAVVALFDSDSDSSSIEIHSLTQNPLDMAPQSFWTSPSRISSLKTSQFYQNPLVFASTYTGSLHV

Query:  LSVEPMDASLDSELSVPEKVLHDRPISCVDVMDGGGECLTVAEDGRVNLVSVGESGLNYRRIFDSNGLVSYTAAKWASPTEFATGGCGFSLQWWDQRKPG
        LSVEPM+ASLDSELSVPEK+LHD PISCVDVMD GGECLTV+EDGRVNLVSVGESGLNYRRIFDSNGLVSY A KWASPTEF TGGCGFSLQWWDQRKPG
Subjt:  LSVEPMDASLDSELSVPEKVLHDRPISCVDVMDGGGECLTVAEDGRVNLVSVGESGLNYRRIFDSNGLVSYTAAKWASPTEFATGGCGFSLQWWDQRKPG

Query:  GAVSQFKGDWASGIVHCIDIHPSRKHTCLAGGSFGTVFAWDLRWQQQPIILSGLEGSKTSNFSPCESEVWEVHYDPYIKSGNIGGMSSSQILPAMICSED
        GAVSQFK DWASGIVHCIDIHPSRKHTCLAGGSFGTVFAWDLR QQQPIILSGLEG+KTSN SPCESEVWEVHYDPYIKSGN+GGMSS+QILPAMICSED
Subjt:  GAVSQFKGDWASGIVHCIDIHPSRKHTCLAGGSFGTVFAWDLRWQQQPIILSGLEGSKTSNFSPCESEVWEVHYDPYIKSGNIGGMSSSQILPAMICSED

Query:  GIITSIEQGKQPVELLAEPCAINGFDIDRQHPSEVICNLEWESVAILSR
        GI+TSIEQGK+PVELLAEPCAINGFDIDRQHPSEVICNLEWESVAILSR
Subjt:  GIITSIEQGKQPVELLAEPCAINGFDIDRQHPSEVICNLEWESVAILSR

A0A6J1DUZ0 nuclear pore complex protein NUP43

3.1e-193

93.45

Show/hide

Query:  MAIVSP-QQQPQIHRFPQFKYVDGVRWLPPLSAFGRFAVVALFDSDSDSSSIEIHSLTQNPLDMAPQSFWTSPSRISSLKTSQFYQNPLVFASTYTGSLH
        MAI+SP QQQPQIHRFP FKYVDGVRWLP LSAFGRFAV+A FDSDSDSSSIEIHS+TQN LD+AP S W SPSR+SSLKTSQ YQNPLVFASTYTGSLH
Subjt:  MAIVSP-QQQPQIHRFPQFKYVDGVRWLPPLSAFGRFAVVALFDSDSDSSSIEIHSLTQNPLDMAPQSFWTSPSRISSLKTSQFYQNPLVFASTYTGSLH

Query:  VLSVEPMDASLDSELSVPEKVLHDRPISCVDVMDGGGECLTVAEDGRVNLVSVGESGLNYRRIFDSNGLVSYTAAKWASPTEFATGGCGFSLQWWDQRKP
        VLSVEPMDASLDSEL+VPEK LHD PISCVDVMDGGGECLTVAEDGRVNLVSVGESGLNYRRIFDSNGLVSYTAAKWASPTEFATGGCGFSLQWWDQRKP
Subjt:  VLSVEPMDASLDSELSVPEKVLHDRPISCVDVMDGGGECLTVAEDGRVNLVSVGESGLNYRRIFDSNGLVSYTAAKWASPTEFATGGCGFSLQWWDQRKP

Query:  GGAVSQFKGDWASGIVHCIDIHPSRKHTCLAGGSFGTVFAWDLRWQQQPIILSGLEGSKTSNFSPCESEVWEVHYDPYIKSGNIGGMSSSQILPAMICSE
        GGAVSQFKGDWASGIVHCIDIHPSRKHTCLAGGSFGTVFAWDLRWQQQPIILSGLE SK SN SPCESEVWEVHYDPYIKS NIGGMSSSQILPAMICSE
Subjt:  GGAVSQFKGDWASGIVHCIDIHPSRKHTCLAGGSFGTVFAWDLRWQQQPIILSGLEGSKTSNFSPCESEVWEVHYDPYIKSGNIGGMSSSQILPAMICSE

Query:  DGIITSIEQGKQPVELLAEPCAINGFDIDRQHPSEVICNLEWESVAILSRP
        DGI+TS+EQGKQPVELLAEPCAINGFDIDRQHPSEVICNLEWESVAILSRP
Subjt:  DGIITSIEQGKQPVELLAEPCAINGFDIDRQHPSEVICNLEWESVAILSRP

A0A6J1FCG9 nuclear pore complex protein NUP43

1.3e-207

100

Show/hide

Query:  MAIVSPQQQPQIHRFPQFKYVDGVRWLPPLSAFGRFAVVALFDSDSDSSSIEIHSLTQNPLDMAPQSFWTSPSRISSLKTSQFYQNPLVFASTYTGSLHV
        MAIVSPQQQPQIHRFPQFKYVDGVRWLPPLSAFGRFAVVALFDSDSDSSSIEIHSLTQNPLDMAPQSFWTSPSRISSLKTSQFYQNPLVFASTYTGSLHV
Subjt:  MAIVSPQQQPQIHRFPQFKYVDGVRWLPPLSAFGRFAVVALFDSDSDSSSIEIHSLTQNPLDMAPQSFWTSPSRISSLKTSQFYQNPLVFASTYTGSLHV

Query:  LSVEPMDASLDSELSVPEKVLHDRPISCVDVMDGGGECLTVAEDGRVNLVSVGESGLNYRRIFDSNGLVSYTAAKWASPTEFATGGCGFSLQWWDQRKPG
        LSVEPMDASLDSELSVPEKVLHDRPISCVDVMDGGGECLTVAEDGRVNLVSVGESGLNYRRIFDSNGLVSYTAAKWASPTEFATGGCGFSLQWWDQRKPG
Subjt:  LSVEPMDASLDSELSVPEKVLHDRPISCVDVMDGGGECLTVAEDGRVNLVSVGESGLNYRRIFDSNGLVSYTAAKWASPTEFATGGCGFSLQWWDQRKPG

Query:  GAVSQFKGDWASGIVHCIDIHPSRKHTCLAGGSFGTVFAWDLRWQQQPIILSGLEGSKTSNFSPCESEVWEVHYDPYIKSGNIGGMSSSQILPAMICSED
        GAVSQFKGDWASGIVHCIDIHPSRKHTCLAGGSFGTVFAWDLRWQQQPIILSGLEGSKTSNFSPCESEVWEVHYDPYIKSGNIGGMSSSQILPAMICSED
Subjt:  GAVSQFKGDWASGIVHCIDIHPSRKHTCLAGGSFGTVFAWDLRWQQQPIILSGLEGSKTSNFSPCESEVWEVHYDPYIKSGNIGGMSSSQILPAMICSED

Query:  GIITSIEQGKQPVELLAEPCAINGFDIDRQHPSEVICNLEWESVAILSRP
        GIITSIEQGKQPVELLAEPCAINGFDIDRQHPSEVICNLEWESVAILSRP
Subjt:  GIITSIEQGKQPVELLAEPCAINGFDIDRQHPSEVICNLEWESVAILSRP

A0A6J1HYH3 nuclear pore complex protein NUP43

2.5e-203

97.71

Show/hide

Query:  MAIVSPQQQPQIHRFPQFKYVDGVRWLPPLSAFGRFAVVALFDSDSDSSSIEIHSLTQNPLDMAPQSFWTSPSRISSLKTSQFYQNPLVFASTYTGSLHV
        MAIVSPQQQPQIHRFPQFKY+DGVRWLPPLSAFGRFAVVALFDSDSDSSSIEIHSLTQNPLDMAPQS WTSPSRISSLKTSQFYQNPLVFASTYTGSLHV
Subjt:  MAIVSPQQQPQIHRFPQFKYVDGVRWLPPLSAFGRFAVVALFDSDSDSSSIEIHSLTQNPLDMAPQSFWTSPSRISSLKTSQFYQNPLVFASTYTGSLHV

Query:  LSVEPMDASLDSELSVPEKVLHDRPISCVDVMDGGGECLTVAEDGRVNLVSVGESGLNYRRIFDSNGLVSYTAAKWASPTEFATGGCGFSLQWWDQRKPG
        LSVEPMDASLDSELSVPEK+LHDRPISCVDVMD GGECLTVAEDGRVNLVSVGESGLNYRRIFDSNGLVSYTAAKWASPTEFATGGCGFSLQWWDQRKPG
Subjt:  LSVEPMDASLDSELSVPEKVLHDRPISCVDVMDGGGECLTVAEDGRVNLVSVGESGLNYRRIFDSNGLVSYTAAKWASPTEFATGGCGFSLQWWDQRKPG

Query:  GAVSQFKGDWASGIVHCIDIHPSRKHTCLAGGSFGTVFAWDLRWQQQPIILSGLEGSKTSNFSPCESEVWEVHYDPYIKSGNIGGMSSSQILPAMICSED
        GAV QFKGDWASGIVHC+DIHPSRKHTCLAGGSFGTVFAWDLRWQQQPIILSGLEGSKTSNFSPCESEVWEV YDPYIKSGNIGGMSSSQILPAMICSED
Subjt:  GAVSQFKGDWASGIVHCIDIHPSRKHTCLAGGSFGTVFAWDLRWQQQPIILSGLEGSKTSNFSPCESEVWEVHYDPYIKSGNIGGMSSSQILPAMICSED

Query:  GIITSIEQGKQPVELLAEPCAINGFDIDRQHPSEVICNLEWESVAILSRP
        GIITSIEQGKQPVELLAEPCAINGFDID QHPSEVICNLEWESVAILSRP
Subjt:  GIITSIEQGKQPVELLAEPCAINGFDIDRQHPSEVICNLEWESVAILSRP

SwissProt top hits

e value

%identity

Alignment

Q24JJ9 Nuclear pore complex protein NUP43

6.3e-111

57.97

Show/hide

Query:  QQQPQIHRFPQFKYVDGVRWLPPLSAFGRFAVVALFDSDSDSSSIEIHSLTQNPLD-------MAPQSFWTSPSRISSLKTS-------QFYQNPLVFAS
        Q   Q+HR PQ KYVDGVRWLP  SA  RF   A +D+D DSSSIEI SL  NP         +   S WTSPSR+SSL+ +        F   P+V A+
Subjt:  QQQPQIHRFPQFKYVDGVRWLPPLSAFGRFAVVALFDSDSDSSSIEIHSLTQNPLD-------MAPQSFWTSPSRISSLKTS-------QFYQNPLVFAS

Query:  TYTGSLHVLSVEPMDASLDSELSVPE-KVLHDRPISCVDVMDGGGECLTVAEDGRVNLVS-VGESGLNYRRIFDSNGLVSYTAAKWASPTEFATGGCGFS
        T +GSLHVL ++ ++ +   E    E +  H   +  VD  + GGEC+TV EDGRVN+V  V   GL YR++FD NGLV+Y A KWASPTEF TGG GF 
Subjt:  TYTGSLHVLSVEPMDASLDSELSVPE-KVLHDRPISCVDVMDGGGECLTVAEDGRVNLVS-VGESGLNYRRIFDSNGLVSYTAAKWASPTEFATGGCGFS

Query:  LQWWDQRKPGGAVSQFKGDW----ASGIVHCIDIHPSRKHTCLAGGSFGTVFAWDLRWQQQPIILSGLEGSKTSNFSPCESEVWEVHYDPYIKSGNIGGM
        LQ WDQRK G AVSQ KG+W     S IVH IDIHPSRKHTC+AGGS GTVFAWDLRW QQPI+LSG+  S+  N    ESEVWEV YD Y KS     +
Subjt:  LQWWDQRKPGGAVSQFKGDW----ASGIVHCIDIHPSRKHTCLAGGSFGTVFAWDLRWQQQPIILSGLEGSKTSNFSPCESEVWEVHYDPYIKSGNIGGM

Query:  SSSQILPAMICSEDGIITSIEQGKQPVELLAEPCAINGFDIDRQHPSEVICNLEWESVAILSRP
        SSS+ILP M CSEDGI+  IEQG++P+ELLAEPCAIN FDIDRQ+P +VIC+LEWES+A+ SRP
Subjt:  SSSQILPAMICSEDGIITSIEQGKQPVELLAEPCAINGFDIDRQHPSEVICNLEWESVAILSRP

Arabidopsis top hits

e value

%identity

Alignment

AT4G30840.1 Transducin/WD40 repeat-like superfamily protein

4.5e-112

57.97

Show/hide

Query:  QQQPQIHRFPQFKYVDGVRWLPPLSAFGRFAVVALFDSDSDSSSIEIHSLTQNPLD-------MAPQSFWTSPSRISSLKTS-------QFYQNPLVFAS
        Q   Q+HR PQ KYVDGVRWLP  SA  RF   A +D+D DSSSIEI SL  NP         +   S WTSPSR+SSL+ +        F   P+V A+
Subjt:  QQQPQIHRFPQFKYVDGVRWLPPLSAFGRFAVVALFDSDSDSSSIEIHSLTQNPLD-------MAPQSFWTSPSRISSLKTS-------QFYQNPLVFAS

Query:  TYTGSLHVLSVEPMDASLDSELSVPE-KVLHDRPISCVDVMDGGGECLTVAEDGRVNLVS-VGESGLNYRRIFDSNGLVSYTAAKWASPTEFATGGCGFS
        T +GSLHVL ++ ++ +   E    E +  H   +  VD  + GGEC+TV EDGRVN+V  V   GL YR++FD NGLV+Y A KWASPTEF TGG GF 
Subjt:  TYTGSLHVLSVEPMDASLDSELSVPE-KVLHDRPISCVDVMDGGGECLTVAEDGRVNLVS-VGESGLNYRRIFDSNGLVSYTAAKWASPTEFATGGCGFS

Query:  LQWWDQRKPGGAVSQFKGDW----ASGIVHCIDIHPSRKHTCLAGGSFGTVFAWDLRWQQQPIILSGLEGSKTSNFSPCESEVWEVHYDPYIKSGNIGGM
        LQ WDQRK G AVSQ KG+W     S IVH IDIHPSRKHTC+AGGS GTVFAWDLRW QQPI+LSG+  S+  N    ESEVWEV YD Y KS     +
Subjt:  LQWWDQRKPGGAVSQFKGDW----ASGIVHCIDIHPSRKHTCLAGGSFGTVFAWDLRWQQQPIILSGLEGSKTSNFSPCESEVWEVHYDPYIKSGNIGGM

Query:  SSSQILPAMICSEDGIITSIEQGKQPVELLAEPCAINGFDIDRQHPSEVICNLEWESVAILSRP
        SSS+ILP M CSEDGI+  IEQG++P+ELLAEPCAIN FDIDRQ+P +VIC+LEWES+A+ SRP
Subjt:  SSSQILPAMICSEDGIITSIEQGKQPVELLAEPCAINGFDIDRQHPSEVICNLEWESVAILSRP

Sequences

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CDS sequence

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ATGGCGATCGTGAGTCCCCAGCAGCAACCTCAAATCCACAGGTTTCCGCAATTCAAGTATGTTGACGGCGTTCGATGGCTTCCACCGCTCTCCGCATTCGGCCGGTTTGC
CGTCGTTGCCCTTTTCGACTCCGATTCCGACTCATCCTCCATTGAAATTCACTCCCTTACTCAAAATCCGCTGGATATGGCTCCTCAGTCGTTTTGGACGTCACCTTCAA
GAATCTCTTCCCTTAAAACCTCTCAATTCTATCAGAACCCTCTCGTTTTCGCTTCGACTTATACGGGCTCTCTTCATGTTCTATCTGTCGAGCCAATGGATGCGTCGCTC
GATTCGGAGCTCTCCGTGCCTGAGAAGGTATTGCACGATAGACCTATTTCTTGTGTCGATGTGATGGATGGTGGAGGTGAATGTCTGACGGTTGCGGAAGATGGACGGGT
GAATTTGGTTAGCGTTGGGGAATCTGGATTGAATTATCGTCGGATATTCGATAGTAATGGGTTGGTGTCGTATACTGCAGCGAAATGGGCATCCCCCACTGAGTTTGCGA
CAGGAGGTTGTGGGTTTAGCTTGCAATGGTGGGATCAGAGGAAGCCCGGTGGAGCAGTTTCTCAGTTTAAGGGCGACTGGGCTTCTGGTATTGTTCACTGCATAGACATC
CATCCATCCCGAAAACACACTTGTTTGGCAGGAGGCTCTTTCGGAACTGTCTTTGCCTGGGATTTGAGGTGGCAACAGCAGCCTATCATTCTCTCAGGTCTAGAAGGGAG
CAAAACATCAAATTTTTCGCCATGTGAAAGTGAGGTTTGGGAGGTTCACTATGATCCTTATATTAAGTCTGGCAACATTGGTGGCATGTCATCTTCGCAGATTTTACCTG
CCATGATCTGCTCCGAGGACGGGATTATAACAAGTATTGAACAAGGCAAGCAGCCTGTGGAACTGCTAGCAGAACCTTGCGCAATTAATGGTTTTGACATCGACCGTCAA
CACCCATCGGAAGTGATATGTAATTTGGAATGGGAATCCGTGGCCATCCTGTCAAGACCTTGA

mRNA sequence

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CACATTTTCAGTTGCCGTCGTCACTCTGATTCCCAGTCTTCCTGGAAAGTGAGACAACTGAGCTTGCTTAAACCCTAACAATGGCGATCGTGAGTCCCCAGCAGCAACCT
CAAATCCACAGGTTTCCGCAATTCAAGTATGTTGACGGCGTTCGATGGCTTCCACCGCTCTCCGCATTCGGCCGGTTTGCCGTCGTTGCCCTTTTCGACTCCGATTCCGA
CTCATCCTCCATTGAAATTCACTCCCTTACTCAAAATCCGCTGGATATGGCTCCTCAGTCGTTTTGGACGTCACCTTCAAGAATCTCTTCCCTTAAAACCTCTCAATTCT
ATCAGAACCCTCTCGTTTTCGCTTCGACTTATACGGGCTCTCTTCATGTTCTATCTGTCGAGCCAATGGATGCGTCGCTCGATTCGGAGCTCTCCGTGCCTGAGAAGGTA
TTGCACGATAGACCTATTTCTTGTGTCGATGTGATGGATGGTGGAGGTGAATGTCTGACGGTTGCGGAAGATGGACGGGTGAATTTGGTTAGCGTTGGGGAATCTGGATT
GAATTATCGTCGGATATTCGATAGTAATGGGTTGGTGTCGTATACTGCAGCGAAATGGGCATCCCCCACTGAGTTTGCGACAGGAGGTTGTGGGTTTAGCTTGCAATGGT
GGGATCAGAGGAAGCCCGGTGGAGCAGTTTCTCAGTTTAAGGGCGACTGGGCTTCTGGTATTGTTCACTGCATAGACATCCATCCATCCCGAAAACACACTTGTTTGGCA
GGAGGCTCTTTCGGAACTGTCTTTGCCTGGGATTTGAGGTGGCAACAGCAGCCTATCATTCTCTCAGGTCTAGAAGGGAGCAAAACATCAAATTTTTCGCCATGTGAAAG
TGAGGTTTGGGAGGTTCACTATGATCCTTATATTAAGTCTGGCAACATTGGTGGCATGTCATCTTCGCAGATTTTACCTGCCATGATCTGCTCCGAGGACGGGATTATAA
CAAGTATTGAACAAGGCAAGCAGCCTGTGGAACTGCTAGCAGAACCTTGCGCAATTAATGGTTTTGACATCGACCGTCAACACCCATCGGAAGTGATATGTAATTTGGAA
TGGGAATCCGTGGCCATCCTGTCAAGACCTTGATTTTCAGAAGTCATCGTCTTTTCTAAATCGTTTGGTTACAATCCACTATATCGATCCCTTTGACGATTCCTACATTT
TTAACCGAGCGGCATCGTGATCTTCACATGCTCACGACCAGCCTTGAAGGGAACCCAAGTCCCATATGCATTTTTCGCCTGACTTTGTGGCTTCGTTGGACTTTCGACGA
GGTTTGTTTTTGCCAACTAAACACAACTTATACAGAATCCAAGCTTGTTCGGCCACACATGTTGCCTGCGCGTGCATGTTCAATCTTCTGCAACCCAGCCGGCGTGCCTC
TACACTAGGCCAAGTCATTTGTTCGGGTTCTATCGAAGCATTGGACCCTCCCGTGTCCATGCCATATTAGTTACAAATTTTGAATTGGTTGGCGGTTGTATGATCCAACC
TTCGACACATGGGCTGGTGCGCAATGTCGG

Protein sequence

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MAIVSPQQQPQIHRFPQFKYVDGVRWLPPLSAFGRFAVVALFDSDSDSSSIEIHSLTQNPLDMAPQSFWTSPSRISSLKTSQFYQNPLVFASTYTGSLHVLSVEPMDASL
DSELSVPEKVLHDRPISCVDVMDGGGECLTVAEDGRVNLVSVGESGLNYRRIFDSNGLVSYTAAKWASPTEFATGGCGFSLQWWDQRKPGGAVSQFKGDWASGIVHCIDI
HPSRKHTCLAGGSFGTVFAWDLRWQQQPIILSGLEGSKTSNFSPCESEVWEVHYDPYIKSGNIGGMSSSQILPAMICSEDGIITSIEQGKQPVELLAEPCAINGFDIDRQ
HPSEVICNLEWESVAILSRP

CmoCh12G008430 (gene) of Cucurbita moschata (Rifu) v1 genome