; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

CmoCh12G008540 (gene) of Cucurbita moschata (Rifu) v1 genome

Gene IDCmoCh12G008540
OrganismCucurbita moschata Rifu (Cucurbita moschata (Rifu) v1)
DescriptionTranslation initiation factor IF-3
Genome locationCmo_Chr12:7796289..7799881
RNA-Seq ExpressionCmoCh12G008540
SyntenyCmoCh12G008540
Gene Ontology termsGO:0006413 - translational initiation (biological process)
GO:0032790 - ribosome disassembly (biological process)
GO:0009507 - chloroplast (cellular component)
GO:0003743 - translation initiation factor activity (molecular function)
GO:0043022 - ribosome binding (molecular function)
InterPro domainsIPR001288 - Translation initiation factor 3
IPR019813 - Translation initiation factor 3, conserved site
IPR019814 - Translation initiation factor 3, N-terminal
IPR019815 - Translation initiation factor 3, C-terminal
IPR036787 - Translation initiation factor 3 (IF-3), N-terminal domain superfamily
IPR036788 - Translation initiation factor 3 (IF-3), C-terminal domain superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG6586047.1 Translation initiation factor IF3-2, chloroplastic, partial [Cucurbita argyrosperma subsp. sororia]2.0e-13995.53Show/hide
Query:  MAGLTARFPFKPLLSHSSASPTTSAAAPSSSATATPIRTSISPLPLSSSSKSNAFRFRLHNSNSLHLLFTTSTRSTVVAQYGGGSRPSGPADSKRFDDGL
        MAGL  RFPFKPLLSHSS       AAPSSSATATPIRTSISPLPLSSSSKSNAFRFRLHNSNSLHLLFTTSTRSTV+AQYGG SR SGPADSKR DDGL
Subjt:  MAGLTARFPFKPLLSHSSASPTTSAAAPSSSATATPIRTSISPLPLSSSSKSNAFRFRLHNSNSLHLLFTTSTRSTVVAQYGGGSRPSGPADSKRFDDGL

Query:  GVDISAIRSNTVRLIDAQQNMVGIVSKAQAIQMADDAELDLVVLSPDADPPVVRIMDYSKYRYEQQKKKRGQQKKSAATRMDLKELKMGYNIDQHDYSVR
        GVDISAIRSNTVRLIDAQQNMVGIVSKAQAIQMADDAELDLVVLSPDADPPVVRIMDYSKYRYEQQKKKRGQQKKSAATRMDLKELKMGYNIDQHDYSVR
Subjt:  GVDISAIRSNTVRLIDAQQNMVGIVSKAQAIQMADDAELDLVVLSPDADPPVVRIMDYSKYRYEQQKKKRGQQKKSAATRMDLKELKMGYNIDQHDYSVR

Query:  LKAARKFLKDGDKVKVIVNLKGRENAFKNIAIELIRRFQEEIGELATEEAKNLRDRNMFIVLAPNKAVLQKAQEPPKVKDNLVVNEVSASV
        LKAARKFLKDGDKVKVIVNLKGRENAFKNIAIELIRRFQEEIGELATEEAKNLRDRNMFIVLAPNKAVLQKAQEPPKVKDNLVVNEVSASV
Subjt:  LKAARKFLKDGDKVKVIVNLKGRENAFKNIAIELIRRFQEEIGELATEEAKNLRDRNMFIVLAPNKAVLQKAQEPPKVKDNLVVNEVSASV

XP_022158178.1 translation initiation factor IF3-4, chloroplastic [Momordica charantia]1.5e-11882.19Show/hide
Query:  MAGLTARFPFKPLLSHSSASPTTSAAAPSSSATAT-PIRTSISPLPLSSSSKSNAFRFRLHNSNSLHLLFTTSTRSTVVAQYGGGSRPSGPADSKRFDDG
        MAGLT+RFPFKPLLS SSA+ +++AA+ SSSA A  P RTSISPLPL SSS+SNAF FRLHNSNSL L+ ++  R +V A++GG  R SGPADSKR DD 
Subjt:  MAGLTARFPFKPLLSHSSASPTTSAAAPSSSATAT-PIRTSISPLPLSSSSKSNAFRFRLHNSNSLHLLFTTSTRSTVVAQYGGGSRPSGPADSKRFDDG

Query:  LGVDISAIRSNTVRLIDAQQNMVGIVSKAQAIQMADDAELDLVVLSPDADPPVVRIMDYSKYRYEQQKKKRGQQKKSAATRMDLKELKMGYNIDQHDYSV
         G+D+SAIRSN VRLIDAQQNMVGIVSKAQAIQMA+DAELDLVVLSPDADPPVVRIMDY+KYRYE QKKKRGQQKKSAATRMDLKELKMGYNIDQHDYSV
Subjt:  LGVDISAIRSNTVRLIDAQQNMVGIVSKAQAIQMADDAELDLVVLSPDADPPVVRIMDYSKYRYEQQKKKRGQQKKSAATRMDLKELKMGYNIDQHDYSV

Query:  RLKAARKFLKDGDKVKVIVNLKGRENAFKNIAIELIRRFQEEIGELATEEAKNLRDRNMFIVLAPNKAVLQKAQEPPKVKDNLVVNEVSASV
        RLKAAR+FLKDGDKVKVIVNLKGREN F+NIAIELIRRFQ+EIGELATEEAKN RDRN+FIVL PNKAVLQKAQEPPK KDN  +NEVSA V
Subjt:  RLKAARKFLKDGDKVKVIVNLKGRENAFKNIAIELIRRFQEEIGELATEEAKNLRDRNMFIVLAPNKAVLQKAQEPPKVKDNLVVNEVSASV

XP_022937979.1 translation initiation factor IF3-4, chloroplastic-like [Cucurbita moschata]4.7e-149100Show/hide
Query:  MAGLTARFPFKPLLSHSSASPTTSAAAPSSSATATPIRTSISPLPLSSSSKSNAFRFRLHNSNSLHLLFTTSTRSTVVAQYGGGSRPSGPADSKRFDDGL
        MAGLTARFPFKPLLSHSSASPTTSAAAPSSSATATPIRTSISPLPLSSSSKSNAFRFRLHNSNSLHLLFTTSTRSTVVAQYGGGSRPSGPADSKRFDDGL
Subjt:  MAGLTARFPFKPLLSHSSASPTTSAAAPSSSATATPIRTSISPLPLSSSSKSNAFRFRLHNSNSLHLLFTTSTRSTVVAQYGGGSRPSGPADSKRFDDGL

Query:  GVDISAIRSNTVRLIDAQQNMVGIVSKAQAIQMADDAELDLVVLSPDADPPVVRIMDYSKYRYEQQKKKRGQQKKSAATRMDLKELKMGYNIDQHDYSVR
        GVDISAIRSNTVRLIDAQQNMVGIVSKAQAIQMADDAELDLVVLSPDADPPVVRIMDYSKYRYEQQKKKRGQQKKSAATRMDLKELKMGYNIDQHDYSVR
Subjt:  GVDISAIRSNTVRLIDAQQNMVGIVSKAQAIQMADDAELDLVVLSPDADPPVVRIMDYSKYRYEQQKKKRGQQKKSAATRMDLKELKMGYNIDQHDYSVR

Query:  LKAARKFLKDGDKVKVIVNLKGRENAFKNIAIELIRRFQEEIGELATEEAKNLRDRNMFIVLAPNKAVLQKAQEPPKVKDNLVVNEVSASV
        LKAARKFLKDGDKVKVIVNLKGRENAFKNIAIELIRRFQEEIGELATEEAKNLRDRNMFIVLAPNKAVLQKAQEPPKVKDNLVVNEVSASV
Subjt:  LKAARKFLKDGDKVKVIVNLKGRENAFKNIAIELIRRFQEEIGELATEEAKNLRDRNMFIVLAPNKAVLQKAQEPPKVKDNLVVNEVSASV

XP_022969585.1 translation initiation factor IF3-4, chloroplastic-like [Cucurbita maxima]1.0e-14095.9Show/hide
Query:  MAGLTARFPFKPLLSHSSASPTTSAAAPSSSAT--ATPIRTSISPLPLSSSSKSNAFRFRLHNSNSLHLLFTTSTRSTVVAQYGGGSRPSGPADSKRFDD
        MAGLT RFPFKPLLSHSSA+PTTSAAAPSSSAT  ATPIRTSISPLPL SSSK NAFRFR HNSNSLHL+FTTSTRSTVV+QYGG SR SGPADSKRFDD
Subjt:  MAGLTARFPFKPLLSHSSASPTTSAAAPSSSAT--ATPIRTSISPLPLSSSSKSNAFRFRLHNSNSLHLLFTTSTRSTVVAQYGGGSRPSGPADSKRFDD

Query:  GLGVDISAIRSNTVRLIDAQQNMVGIVSKAQAIQMADDAELDLVVLSPDADPPVVRIMDYSKYRYEQQKKKRGQQKKSAATRMDLKELKMGYNIDQHDYS
        GLGVDISAIRSNTVRLIDAQQNMVGIVSK QAIQMADDAELDLVVLSPDADPPVVRIMDYSKYRYEQQKKKRGQQKKSAATRMDLKELKMGYNIDQHDYS
Subjt:  GLGVDISAIRSNTVRLIDAQQNMVGIVSKAQAIQMADDAELDLVVLSPDADPPVVRIMDYSKYRYEQQKKKRGQQKKSAATRMDLKELKMGYNIDQHDYS

Query:  VRLKAARKFLKDGDKVKVIVNLKGRENAFKNIAIELIRRFQEEIGELATEEAKNLRDRNMFIVLAPNKAVLQKAQEPPKVKDNLVVNEVSASV
        VRLKAARKFLKDGDKVKVIVNLKGRENAFKNIAIELIRRFQEEIGELATEEAKNLRDRNMFIVLAPNKAVLQKAQEPPKVKDNLVVNEVSASV
Subjt:  VRLKAARKFLKDGDKVKVIVNLKGRENAFKNIAIELIRRFQEEIGELATEEAKNLRDRNMFIVLAPNKAVLQKAQEPPKVKDNLVVNEVSASV

XP_023536766.1 translation initiation factor IF3-4, chloroplastic-like [Cucurbita pepo subsp. pepo]1.4e-14597.94Show/hide
Query:  MAGLTARFPFKPLLSHSSASPTTSAAAPSSSATATPIRTSISPLPLSSSSKSNAFRFRLHNSNSLHLLFTTSTRSTVVAQYGGGSRPSGPADSKRFDDGL
        MAGLT RFPFKPLLSHSSA+PTTSA+APSSSATATPIRTS+SPLPL SSSKSNAFRFRLHNSNSLHL+FTTSTRSTVVAQYGGGSRPSGPADSKRFDDGL
Subjt:  MAGLTARFPFKPLLSHSSASPTTSAAAPSSSATATPIRTSISPLPLSSSSKSNAFRFRLHNSNSLHLLFTTSTRSTVVAQYGGGSRPSGPADSKRFDDGL

Query:  GVDISAIRSNTVRLIDAQQNMVGIVSKAQAIQMADDAELDLVVLSPDADPPVVRIMDYSKYRYEQQKKKRGQQKKSAATRMDLKELKMGYNIDQHDYSVR
        GVDISAIRSNTVRLIDAQQNMVGIVSKAQAIQMADDAELDLVVLSPDADPPVVRIMDYSKYRYEQQKKKRGQQKKSAATRMDLKELKMGYNIDQHDYSVR
Subjt:  GVDISAIRSNTVRLIDAQQNMVGIVSKAQAIQMADDAELDLVVLSPDADPPVVRIMDYSKYRYEQQKKKRGQQKKSAATRMDLKELKMGYNIDQHDYSVR

Query:  LKAARKFLKDGDKVKVIVNLKGRENAFKNIAIELIRRFQEEIGELATEEAKNLRDRNMFIVLAPNKAVLQKAQEPPKVKDNLVVNEVSASV
        LKAARKFLKDGDKVKVIVNLKGRENAFKNIAIELIRRFQEEIGELATEEAKNLRDRNMFIVLAPNKAVLQKAQEPPKVKDNLVVNEVSASV
Subjt:  LKAARKFLKDGDKVKVIVNLKGRENAFKNIAIELIRRFQEEIGELATEEAKNLRDRNMFIVLAPNKAVLQKAQEPPKVKDNLVVNEVSASV

TrEMBL top hitse value%identityAlignment
A0A0A0LH34 Translation initiation factor IF-31.0e-10975.67Show/hide
Query:  MAGLTARFPFKPLLSHSSASPTTSAAA-----PSSSATATPIRTSISPLPLSSSSKSNAFRFRLHNSNSLHLLFTTST----RSTVVAQYGGGSRPSGPA
        MAGL+  FPFK LLS SSA+ TT++++     P+SS++ TP RTS   LP+SSS+ SNAF+FRLH SNSL LLF++      R++V A+ GG  R SGP 
Subjt:  MAGLTARFPFKPLLSHSSASPTTSAAA-----PSSSATATPIRTSISPLPLSSSSKSNAFRFRLHNSNSLHLLFTTST----RSTVVAQYGGGSRPSGPA

Query:  DSKRFDDGLGVDISAIRSNTVRLIDAQQNMVGIVSKAQAIQMADDAELDLVVLSPDADPPVVRIMDYSKYRYEQQKKKRGQQKKSAATRMDLKELKMGYN
        DSKR +D +G+DISAI+S  VRLIDA+QNMVG+VSKAQAIQMA+DAELDLVV+SPDADPPVVRIMDY+KYRYE QKKKRGQQKKSAATRMDLKELKMGYN
Subjt:  DSKRFDDGLGVDISAIRSNTVRLIDAQQNMVGIVSKAQAIQMADDAELDLVVLSPDADPPVVRIMDYSKYRYEQQKKKRGQQKKSAATRMDLKELKMGYN

Query:  IDQHDYSVRLKAARKFLKDGDKVKVIVNLKGRENAFKNIAIELIRRFQEEIGELATEEAKNLRDRNMFIVLAPNKAVLQKAQEPPKVKDNLVVNEVSASV
        IDQHDYSVRLKAA+KFLKDGDKVKVIVNLKGREN F+NIAIELIRRFQEE+GELATEEAKN RDRN+FIVL PNKAVLQKAQEPPK KD   VN VSASV
Subjt:  IDQHDYSVRLKAARKFLKDGDKVKVIVNLKGRENAFKNIAIELIRRFQEEIGELATEEAKNLRDRNMFIVLAPNKAVLQKAQEPPKVKDNLVVNEVSASV

A0A1S3BV82 Translation initiation factor IF-35.8e-11377.78Show/hide
Query:  MAGLTARFPFKPLLSHSSASPTTS--AAAPSSSATATPIRTSISPLPLSSSSKSNAFRFRLHNSNSLHLLF----TTSTRSTVVAQYGGGSRPSGPADSK
        MAGL+  FPFK LLS SSA+ TT+  AAAP+SS++ TP RTS   LP+SSS  SNAF+ RLH SNSL L+F    ++  R++V A+ GG  R SGP DSK
Subjt:  MAGLTARFPFKPLLSHSSASPTTS--AAAPSSSATATPIRTSISPLPLSSSSKSNAFRFRLHNSNSLHLLF----TTSTRSTVVAQYGGGSRPSGPADSK

Query:  RFDDGLGVDISAIRSNTVRLIDAQQNMVGIVSKAQAIQMADDAELDLVVLSPDADPPVVRIMDYSKYRYEQQKKKRGQQKKSAATRMDLKELKMGYNIDQ
        R +D  G+D+SAIRSN VRLIDAQQNMVG+VSKAQAIQMA+DAELDLVVLSPDADPPVVRIMDY+KYRYE QKKKRGQQKKSAATRMDLKELKMGYNIDQ
Subjt:  RFDDGLGVDISAIRSNTVRLIDAQQNMVGIVSKAQAIQMADDAELDLVVLSPDADPPVVRIMDYSKYRYEQQKKKRGQQKKSAATRMDLKELKMGYNIDQ

Query:  HDYSVRLKAARKFLKDGDKVKVIVNLKGRENAFKNIAIELIRRFQEEIGELATEEAKNLRDRNMFIVLAPNKAVLQKAQEPPKVKDNLVVNEVSASV
        HDYSVRLKAA+KFLKDGDKVKVIVNLKGREN F+NIAIELIRRFQEE+GELATEEAKN RDRN+FIVL PNKAVLQKAQEPPK KD   VNEVSA V
Subjt:  HDYSVRLKAARKFLKDGDKVKVIVNLKGRENAFKNIAIELIRRFQEEIGELATEEAKNLRDRNMFIVLAPNKAVLQKAQEPPKVKDNLVVNEVSASV

A0A6J1DYM5 Translation initiation factor IF-37.1e-11982.19Show/hide
Query:  MAGLTARFPFKPLLSHSSASPTTSAAAPSSSATAT-PIRTSISPLPLSSSSKSNAFRFRLHNSNSLHLLFTTSTRSTVVAQYGGGSRPSGPADSKRFDDG
        MAGLT+RFPFKPLLS SSA+ +++AA+ SSSA A  P RTSISPLPL SSS+SNAF FRLHNSNSL L+ ++  R +V A++GG  R SGPADSKR DD 
Subjt:  MAGLTARFPFKPLLSHSSASPTTSAAAPSSSATAT-PIRTSISPLPLSSSSKSNAFRFRLHNSNSLHLLFTTSTRSTVVAQYGGGSRPSGPADSKRFDDG

Query:  LGVDISAIRSNTVRLIDAQQNMVGIVSKAQAIQMADDAELDLVVLSPDADPPVVRIMDYSKYRYEQQKKKRGQQKKSAATRMDLKELKMGYNIDQHDYSV
         G+D+SAIRSN VRLIDAQQNMVGIVSKAQAIQMA+DAELDLVVLSPDADPPVVRIMDY+KYRYE QKKKRGQQKKSAATRMDLKELKMGYNIDQHDYSV
Subjt:  LGVDISAIRSNTVRLIDAQQNMVGIVSKAQAIQMADDAELDLVVLSPDADPPVVRIMDYSKYRYEQQKKKRGQQKKSAATRMDLKELKMGYNIDQHDYSV

Query:  RLKAARKFLKDGDKVKVIVNLKGRENAFKNIAIELIRRFQEEIGELATEEAKNLRDRNMFIVLAPNKAVLQKAQEPPKVKDNLVVNEVSASV
        RLKAAR+FLKDGDKVKVIVNLKGREN F+NIAIELIRRFQ+EIGELATEEAKN RDRN+FIVL PNKAVLQKAQEPPK KDN  +NEVSA V
Subjt:  RLKAARKFLKDGDKVKVIVNLKGRENAFKNIAIELIRRFQEEIGELATEEAKNLRDRNMFIVLAPNKAVLQKAQEPPKVKDNLVVNEVSASV

A0A6J1FCR3 Translation initiation factor IF-32.3e-149100Show/hide
Query:  MAGLTARFPFKPLLSHSSASPTTSAAAPSSSATATPIRTSISPLPLSSSSKSNAFRFRLHNSNSLHLLFTTSTRSTVVAQYGGGSRPSGPADSKRFDDGL
        MAGLTARFPFKPLLSHSSASPTTSAAAPSSSATATPIRTSISPLPLSSSSKSNAFRFRLHNSNSLHLLFTTSTRSTVVAQYGGGSRPSGPADSKRFDDGL
Subjt:  MAGLTARFPFKPLLSHSSASPTTSAAAPSSSATATPIRTSISPLPLSSSSKSNAFRFRLHNSNSLHLLFTTSTRSTVVAQYGGGSRPSGPADSKRFDDGL

Query:  GVDISAIRSNTVRLIDAQQNMVGIVSKAQAIQMADDAELDLVVLSPDADPPVVRIMDYSKYRYEQQKKKRGQQKKSAATRMDLKELKMGYNIDQHDYSVR
        GVDISAIRSNTVRLIDAQQNMVGIVSKAQAIQMADDAELDLVVLSPDADPPVVRIMDYSKYRYEQQKKKRGQQKKSAATRMDLKELKMGYNIDQHDYSVR
Subjt:  GVDISAIRSNTVRLIDAQQNMVGIVSKAQAIQMADDAELDLVVLSPDADPPVVRIMDYSKYRYEQQKKKRGQQKKSAATRMDLKELKMGYNIDQHDYSVR

Query:  LKAARKFLKDGDKVKVIVNLKGRENAFKNIAIELIRRFQEEIGELATEEAKNLRDRNMFIVLAPNKAVLQKAQEPPKVKDNLVVNEVSASV
        LKAARKFLKDGDKVKVIVNLKGRENAFKNIAIELIRRFQEEIGELATEEAKNLRDRNMFIVLAPNKAVLQKAQEPPKVKDNLVVNEVSASV
Subjt:  LKAARKFLKDGDKVKVIVNLKGRENAFKNIAIELIRRFQEEIGELATEEAKNLRDRNMFIVLAPNKAVLQKAQEPPKVKDNLVVNEVSASV

A0A6J1I0C0 Translation initiation factor IF-35.0e-14195.9Show/hide
Query:  MAGLTARFPFKPLLSHSSASPTTSAAAPSSSAT--ATPIRTSISPLPLSSSSKSNAFRFRLHNSNSLHLLFTTSTRSTVVAQYGGGSRPSGPADSKRFDD
        MAGLT RFPFKPLLSHSSA+PTTSAAAPSSSAT  ATPIRTSISPLPL SSSK NAFRFR HNSNSLHL+FTTSTRSTVV+QYGG SR SGPADSKRFDD
Subjt:  MAGLTARFPFKPLLSHSSASPTTSAAAPSSSAT--ATPIRTSISPLPLSSSSKSNAFRFRLHNSNSLHLLFTTSTRSTVVAQYGGGSRPSGPADSKRFDD

Query:  GLGVDISAIRSNTVRLIDAQQNMVGIVSKAQAIQMADDAELDLVVLSPDADPPVVRIMDYSKYRYEQQKKKRGQQKKSAATRMDLKELKMGYNIDQHDYS
        GLGVDISAIRSNTVRLIDAQQNMVGIVSK QAIQMADDAELDLVVLSPDADPPVVRIMDYSKYRYEQQKKKRGQQKKSAATRMDLKELKMGYNIDQHDYS
Subjt:  GLGVDISAIRSNTVRLIDAQQNMVGIVSKAQAIQMADDAELDLVVLSPDADPPVVRIMDYSKYRYEQQKKKRGQQKKSAATRMDLKELKMGYNIDQHDYS

Query:  VRLKAARKFLKDGDKVKVIVNLKGRENAFKNIAIELIRRFQEEIGELATEEAKNLRDRNMFIVLAPNKAVLQKAQEPPKVKDNLVVNEVSASV
        VRLKAARKFLKDGDKVKVIVNLKGRENAFKNIAIELIRRFQEEIGELATEEAKNLRDRNMFIVLAPNKAVLQKAQEPPKVKDNLVVNEVSASV
Subjt:  VRLKAARKFLKDGDKVKVIVNLKGRENAFKNIAIELIRRFQEEIGELATEEAKNLRDRNMFIVLAPNKAVLQKAQEPPKVKDNLVVNEVSASV

SwissProt top hitse value%identityAlignment
B0JKQ1 Translation initiation factor IF-31.4e-3144.72Show/hide
Query:  IRSNTVRLIDAQQNMVGIVSKAQAIQMADDAELDLVVLSPDADPPVVRIMDYSKYRYEQQKKKRGQQKKSAATRMDLKELKMGYNIDQHDYSVRLKAARK
        IR   +R+ID+  + +GI++ A+A+++A++ ELDLV++S  A PPV RIMDY KY++EQ+KK R  +KK      D+KE+KM Y ID+HDY+VR+  A++
Subjt:  IRSNTVRLIDAQQNMVGIVSKAQAIQMADDAELDLVVLSPDADPPVVRIMDYSKYRYEQQKKKRGQQKKSAATRMDLKELKMGYNIDQHDYSVRLKAARK

Query:  FLKDGDKVKVIVNLKGRENAFKNIAIELIRRFQEEIGELA-TEEAKNLRDRNMFIVLAPNK
        FLK GDKVK  +  +GRE    N+A EL+ R  +++ ++A  ++A     RNM ++L+P K
Subjt:  FLKDGDKVKVIVNLKGRENAFKNIAIELIRRFQEEIGELA-TEEAKNLRDRNMFIVLAPNK

O82234 Translation initiation factor IF3-2, chloroplastic5.1e-7470.97Show/hide
Query:  GGGSRPSGPADSKR-------FDDGLGVDISAIRSNTVRLIDAQQNMVGIVSKAQAIQMADDAELDLVVLSPDADPPVVRIMDYSKYRYEQQKKKRGQQK
        GGG R SG  D++R        D+ L  DIS+IRS TVRLID QQNM+G+VSK +A++MADDAELDLV+LSPDADPPVV++MDYSKYRYEQQK+K+ QQK
Subjt:  GGGSRPSGPADSKR-------FDDGLGVDISAIRSNTVRLIDAQQNMVGIVSKAQAIQMADDAELDLVVLSPDADPPVVRIMDYSKYRYEQQKKKRGQQK

Query:  KSAATRMDLKELKMGYNIDQHDYSVRLKAARKFLKDGDKVKVIVNLKGRENAFKNIAIELIRRFQEEIGELATEEAKNLRDRNMFIVLAPNKAVLQKAQE
        K+  TRMDLKELKMGYNIDQHDYSVRL+AA+KFL+DGDKVKVIV++KGREN F+NIAIEL+RRFQ EIGELATEE+KN RDRNMFI+L PNK +++K QE
Subjt:  KSAATRMDLKELKMGYNIDQHDYSVRLKAARKFLKDGDKVKVIVNLKGRENAFKNIAIELIRRFQEEIGELATEEAKNLRDRNMFIVLAPNKAVLQKAQE

Query:  PP-KVKDNLVVNEVSAS
        PP + K     NE SAS
Subjt:  PP-KVKDNLVVNEVSAS

Q8R9C2 Translation initiation factor IF-33.1e-3145.34Show/hide
Query:  IRSNTVRLIDAQQNMVGIVSKAQAIQMADDAELDLVVLSPDADPPVVRIMDYSKYRYEQQKKKRGQQKKSAATRMDLKELKMGYNIDQHDYSVRLKAARK
        IR   VRLID     +GI+S  +A ++A +  LDLV + P+A+PPV ++MD+ KYRYE  K+++  +KK     +++KE++M  NI+ HD+ V+LK+A K
Subjt:  IRSNTVRLIDAQQNMVGIVSKAQAIQMADDAELDLVVLSPDADPPVVRIMDYSKYRYEQQKKKRGQQKKSAATRMDLKELKMGYNIDQHDYSVRLKAARK

Query:  FLKDGDKVKVIVNLKGRENAFKNIAIELIRRFQEEIGELA-TEEAKNLRDRNMFIVLAPNK
        FLKDGDKVKV +  +GRE A  ++A +L++RF EE+ E    E+A ++  RNM +V+AP K
Subjt:  FLKDGDKVKVIVNLKGRENAFKNIAIELIRRFQEEIGELA-TEEAKNLRDRNMFIVLAPNK

Q8YNE3 Translation initiation factor IF-35.4e-3146.01Show/hide
Query:  IRSNTVRLIDAQQNMVGIVSKAQAIQMADDAELDLVVLSPDADPPVVRIMDYSKYRYEQQKKKRGQQKKSAATRMDLKELKMGYNIDQHDYSVRLKAARK
        IR   +R+ID   + +GI++  +A+Q+A++ ELDLV+LS  ADPPV RIMDY KY++EQ+KK R  +KK      D+KE+KM Y I++HDY+VR+K A +
Subjt:  IRSNTVRLIDAQQNMVGIVSKAQAIQMADDAELDLVVLSPDADPPVVRIMDYSKYRYEQQKKKRGQQKKSAATRMDLKELKMGYNIDQHDYSVRLKAARK

Query:  FLKDGDKVKVIVNLKGRENAFKNIAIELIRRFQ---EEIGELATEEAKNLRDRNMFIVLAPNK
        FLKDGDKVK  V  +GRE    ++A +L++R     E  GE+  ++A     RNM ++++P K
Subjt:  FLKDGDKVKVIVNLKGRENAFKNIAIELIRRFQ---EEIGELATEEAKNLRDRNMFIVLAPNK

Q94B52 Translation initiation factor IF3-4, chloroplastic3.0e-7471.7Show/hide
Query:  GGGSRPSGP--ADSKRFDDGLGVDISAIRSNTVRLIDAQQNMVGIVSKAQAIQMADDAELDLVVLSPDADPPVVRIMDYSKYRYEQQKKKRGQQKKSAAT
        GGGSR  G      K  +D   +DISAIRS TVRLID QQNM+G+VSK +A++ A+DAELDLV+LSPDADPPVVR+MDYSKYRYEQQK+K+ QQKK+  T
Subjt:  GGGSRPSGP--ADSKRFDDGLGVDISAIRSNTVRLIDAQQNMVGIVSKAQAIQMADDAELDLVVLSPDADPPVVRIMDYSKYRYEQQKKKRGQQKKSAAT

Query:  RMDLKELKMGYNIDQHDYSVRLKAARKFLKDGDKVKVIVNLKGRENAFKNIAIELIRRFQEEIGELATEEAKNLRDRNMFIVLAPNKAVLQKAQE-PPKV
        RMDLKELKMGYNIDQHDYSVR++AARKFL+DGDKVKVIVN+KGREN F+NIAIEL+RRFQ EIGEL TEE+KN RDRN+FIVL PNK V++K QE PPK 
Subjt:  RMDLKELKMGYNIDQHDYSVRLKAARKFLKDGDKVKVIVNLKGRENAFKNIAIELIRRFQEEIGELATEEAKNLRDRNMFIVLAPNKAVLQKAQE-PPKV

Query:  KDNLVVNEVSAS
        K     ++VSA+
Subjt:  KDNLVVNEVSAS

Arabidopsis top hitse value%identityAlignment
AT1G34360.1 translation initiation factor 3 (IF-3) family protein1.5e-0731.51Show/hide
Query:  IRSNTVRLIDAQQNMVGIVSKAQAIQMADDAELDLVVLSPDADPPVVRIMDYSKYRYEQQK--KKRGQQKKSAATRMDLKELKMGYNIDQHDYSVRLKAA
        I  + VRL+  + + V  VS  +A++ A + + DLV +  DA PPV +I+ YS   Y++ K  K+R + K++ A R D+KE++    I+  D   +   A
Subjt:  IRSNTVRLIDAQQNMVGIVSKAQAIQMADDAELDLVVLSPDADPPVVRIMDYSKYRYEQQK--KKRGQQKKSAATRMDLKELKMGYNIDQHDYSVRLKAA

Query:  RKFLKDGDKVKVI-VNLKGRENAFK-NIAIELIRRFQEEIGELATE
         K ++ G +VK + V  K +    +    +EL+ RF   IG+   E
Subjt:  RKFLKDGDKVKVI-VNLKGRENAFK-NIAIELIRRFQEEIGELATE

AT2G24060.1 Translation initiation factor 3 protein3.6e-7570.97Show/hide
Query:  GGGSRPSGPADSKR-------FDDGLGVDISAIRSNTVRLIDAQQNMVGIVSKAQAIQMADDAELDLVVLSPDADPPVVRIMDYSKYRYEQQKKKRGQQK
        GGG R SG  D++R        D+ L  DIS+IRS TVRLID QQNM+G+VSK +A++MADDAELDLV+LSPDADPPVV++MDYSKYRYEQQK+K+ QQK
Subjt:  GGGSRPSGPADSKR-------FDDGLGVDISAIRSNTVRLIDAQQNMVGIVSKAQAIQMADDAELDLVVLSPDADPPVVRIMDYSKYRYEQQKKKRGQQK

Query:  KSAATRMDLKELKMGYNIDQHDYSVRLKAARKFLKDGDKVKVIVNLKGRENAFKNIAIELIRRFQEEIGELATEEAKNLRDRNMFIVLAPNKAVLQKAQE
        K+  TRMDLKELKMGYNIDQHDYSVRL+AA+KFL+DGDKVKVIV++KGREN F+NIAIEL+RRFQ EIGELATEE+KN RDRNMFI+L PNK +++K QE
Subjt:  KSAATRMDLKELKMGYNIDQHDYSVRLKAARKFLKDGDKVKVIVNLKGRENAFKNIAIELIRRFQEEIGELATEEAKNLRDRNMFIVLAPNKAVLQKAQE

Query:  PP-KVKDNLVVNEVSAS
        PP + K     NE SAS
Subjt:  PP-KVKDNLVVNEVSAS

AT4G30690.1 Translation initiation factor 3 protein2.1e-7571.7Show/hide
Query:  GGGSRPSGP--ADSKRFDDGLGVDISAIRSNTVRLIDAQQNMVGIVSKAQAIQMADDAELDLVVLSPDADPPVVRIMDYSKYRYEQQKKKRGQQKKSAAT
        GGGSR  G      K  +D   +DISAIRS TVRLID QQNM+G+VSK +A++ A+DAELDLV+LSPDADPPVVR+MDYSKYRYEQQK+K+ QQKK+  T
Subjt:  GGGSRPSGP--ADSKRFDDGLGVDISAIRSNTVRLIDAQQNMVGIVSKAQAIQMADDAELDLVVLSPDADPPVVRIMDYSKYRYEQQKKKRGQQKKSAAT

Query:  RMDLKELKMGYNIDQHDYSVRLKAARKFLKDGDKVKVIVNLKGRENAFKNIAIELIRRFQEEIGELATEEAKNLRDRNMFIVLAPNKAVLQKAQE-PPKV
        RMDLKELKMGYNIDQHDYSVR++AARKFL+DGDKVKVIVN+KGREN F+NIAIEL+RRFQ EIGEL TEE+KN RDRN+FIVL PNK V++K QE PPK 
Subjt:  RMDLKELKMGYNIDQHDYSVRLKAARKFLKDGDKVKVIVNLKGRENAFKNIAIELIRRFQEEIGELATEEAKNLRDRNMFIVLAPNKAVLQKAQE-PPKV

Query:  KDNLVVNEVSAS
        K     ++VSA+
Subjt:  KDNLVVNEVSAS

AT4G30690.2 Translation initiation factor 3 protein6.2e-5960.38Show/hide
Query:  GGGSRPSGP--ADSKRFDDGLGVDISAIRSNTVRLIDAQQNMVGIVSKAQAIQMADDAELDLVVLSPDADPPVVRIMDYSKYRYEQQKKKRGQQKKSAAT
        GGGSR  G      K  +D   +DISAIRS TVRLID QQNM+G+VSK +A++ A+DAELDLV+LSPDADPPVVR+MDYS                    
Subjt:  GGGSRPSGP--ADSKRFDDGLGVDISAIRSNTVRLIDAQQNMVGIVSKAQAIQMADDAELDLVVLSPDADPPVVRIMDYSKYRYEQQKKKRGQQKKSAAT

Query:  RMDLKELKMGYNIDQHDYSVRLKAARKFLKDGDKVKVIVNLKGRENAFKNIAIELIRRFQEEIGELATEEAKNLRDRNMFIVLAPNKAVLQKAQE-PPKV
                  YNIDQHDYSVR++AARKFL+DGDKVKVIVN+KGREN F+NIAIEL+RRFQ EIGEL TEE+KN RDRN+FIVL PNK V++K QE PPK 
Subjt:  RMDLKELKMGYNIDQHDYSVRLKAARKFLKDGDKVKVIVNLKGRENAFKNIAIELIRRFQEEIGELATEEAKNLRDRNMFIVLAPNKAVLQKAQE-PPKV

Query:  KDNLVVNEVSAS
        K     ++VSA+
Subjt:  KDNLVVNEVSAS


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGCTGGGCTCACCGCCAGATTTCCTTTCAAACCTCTCTTATCCCATTCCTCCGCCTCGCCCACCACCTCTGCCGCCGCGCCCTCCTCCTCCGCCACCGCCACTCCCAT
CCGGACCTCAATTTCCCCTCTCCCCCTCTCCTCCTCCTCTAAGTCCAATGCCTTCAGATTCCGCCTCCACAACTCCAATTCTCTGCATCTCCTCTTCACAACTTCAACTC
GTAGTACTGTAGTTGCTCAATACGGCGGTGGTTCTCGGCCTTCAGGACCGGCGGATTCTAAGCGCTTTGACGATGGTCTTGGTGTCGATATTTCCGCCATTAGATCGAAT
ACTGTGAGGCTTATCGATGCACAACAGAACATGGTTGGAATCGTGTCGAAGGCTCAGGCCATTCAAATGGCTGATGACGCTGAACTTGATTTGGTTGTATTATCACCTGA
TGCAGATCCTCCAGTTGTCAGAATAATGGATTACAGTAAATATAGGTATGAACAGCAAAAGAAGAAAAGGGGACAACAGAAGAAGAGTGCTGCAACTCGCATGGATTTGA
AAGAGCTTAAAATGGGTTACAACATCGACCAACATGATTACTCTGTCCGTTTGAAAGCTGCAAGGAAGTTTTTGAAAGATGGAGATAAGGTTAAAGTTATAGTGAACTTG
AAAGGTCGTGAGAATGCGTTCAAGAACATAGCAATTGAGCTCATCAGACGTTTTCAGGAAGAGATTGGGGAGCTTGCAACTGAAGAGGCCAAGAACTTAAGAGACAGGAA
TATGTTTATTGTTCTAGCTCCTAACAAGGCTGTTCTACAGAAGGCTCAAGAACCCCCCAAGGTAAAAGACAACCTTGTAGTTAATGAAGTTTCTGCCAGTGTTTAA
mRNA sequenceShow/hide mRNA sequence
AAAGTTAAGAAATTGAAGAACTCCCACCCTTCACTGTCTCCTCCCTTCCCACAGCTCAAATCTATGGCTGGGCTCACCGCCAGATTTCCTTTCAAACCTCTCTTATCCCA
TTCCTCCGCCTCGCCCACCACCTCTGCCGCCGCGCCCTCCTCCTCCGCCACCGCCACTCCCATCCGGACCTCAATTTCCCCTCTCCCCCTCTCCTCCTCCTCTAAGTCCA
ATGCCTTCAGATTCCGCCTCCACAACTCCAATTCTCTGCATCTCCTCTTCACAACTTCAACTCGTAGTACTGTAGTTGCTCAATACGGCGGTGGTTCTCGGCCTTCAGGA
CCGGCGGATTCTAAGCGCTTTGACGATGGTCTTGGTGTCGATATTTCCGCCATTAGATCGAATACTGTGAGGCTTATCGATGCACAACAGAACATGGTTGGAATCGTGTC
GAAGGCTCAGGCCATTCAAATGGCTGATGACGCTGAACTTGATTTGGTTGTATTATCACCTGATGCAGATCCTCCAGTTGTCAGAATAATGGATTACAGTAAATATAGGT
ATGAACAGCAAAAGAAGAAAAGGGGACAACAGAAGAAGAGTGCTGCAACTCGCATGGATTTGAAAGAGCTTAAAATGGGTTACAACATCGACCAACATGATTACTCTGTC
CGTTTGAAAGCTGCAAGGAAGTTTTTGAAAGATGGAGATAAGGTTAAAGTTATAGTGAACTTGAAAGGTCGTGAGAATGCGTTCAAGAACATAGCAATTGAGCTCATCAG
ACGTTTTCAGGAAGAGATTGGGGAGCTTGCAACTGAAGAGGCCAAGAACTTAAGAGACAGGAATATGTTTATTGTTCTAGCTCCTAACAAGGCTGTTCTACAGAAGGCTC
AAGAACCCCCCAAGGTAAAAGACAACCTTGTAGTTAATGAAGTTTCTGCCAGTGTTTAAGCTCAAGAAGCGTCGGGATTAAGCTCAAAGTAGAATGGTTAGTCACCACAA
TCTAAATATTCTTCTACCATAGAGAAATATGAGAGTTCTGTGTTTAATACTTCGTTTAATATAATGCATCATACTTTTGTCCATTCTACTTTTTAGTGGAATGTTTAGAA
ATCAGACGTGTTACTAATTCTTTTGAAAATGATATAGCATTAGTAGCCGAGCATTGTGAGATCTCACATCGGTTGGGGATGAGAACGGA
Protein sequenceShow/hide protein sequence
MAGLTARFPFKPLLSHSSASPTTSAAAPSSSATATPIRTSISPLPLSSSSKSNAFRFRLHNSNSLHLLFTTSTRSTVVAQYGGGSRPSGPADSKRFDDGLGVDISAIRSN
TVRLIDAQQNMVGIVSKAQAIQMADDAELDLVVLSPDADPPVVRIMDYSKYRYEQQKKKRGQQKKSAATRMDLKELKMGYNIDQHDYSVRLKAARKFLKDGDKVKVIVNL
KGRENAFKNIAIELIRRFQEEIGELATEEAKNLRDRNMFIVLAPNKAVLQKAQEPPKVKDNLVVNEVSASV