; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

CmoCh12G008750 (gene) of Cucurbita moschata (Rifu) v1 genome

Gene IDCmoCh12G008750
OrganismCucurbita moschata Rifu (Cucurbita moschata (Rifu) v1)
Description40S ribosomal protein S23-1
Genome locationCmo_Chr12:7972348..7976398
RNA-Seq ExpressionCmoCh12G008750
SyntenyCmoCh12G008750
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_022156333.1 uncharacterized protein LOC111023254 [Momordica charantia]5.3e-4489.9Show/hide
Query:  MALRRFFGFSDGELMRSDAKPCSQLMKQTAGLCTVGGGLAFWILCRLHYGPRITVPRSLRWAACGAASMSATSALLVRLFSPECEPQNIAAYDKGQAAR
        MALRR  GFSDGE+MRSDA PC QLMKQTAGLCTVGGGLAFWILCRLHYGPRITVPRSLRWAACGA SMSATSALLVRLFSPECEPQNIAAYDK +  R
Subjt:  MALRRFFGFSDGELMRSDAKPCSQLMKQTAGLCTVGGGLAFWILCRLHYGPRITVPRSLRWAACGAASMSATSALLVRLFSPECEPQNIAAYDKGQAAR

XP_022937466.1 uncharacterized protein LOC111443868 [Cucurbita moschata]8.4e-50100Show/hide
Query:  MALRRFFGFSDGELMRSDAKPCSQLMKQTAGLCTVGGGLAFWILCRLHYGPRITVPRSLRWAACGAASMSATSALLVRLFSPECEPQNIAAYDKGQAAR
        MALRRFFGFSDGELMRSDAKPCSQLMKQTAGLCTVGGGLAFWILCRLHYGPRITVPRSLRWAACGAASMSATSALLVRLFSPECEPQNIAAYDKGQAAR
Subjt:  MALRRFFGFSDGELMRSDAKPCSQLMKQTAGLCTVGGGLAFWILCRLHYGPRITVPRSLRWAACGAASMSATSALLVRLFSPECEPQNIAAYDKGQAAR

XP_022969628.1 uncharacterized protein LOC111468599 [Cucurbita maxima]2.4e-4998.99Show/hide
Query:  MALRRFFGFSDGELMRSDAKPCSQLMKQTAGLCTVGGGLAFWILCRLHYGPRITVPRSLRWAACGAASMSATSALLVRLFSPECEPQNIAAYDKGQAAR
        MALRRFFGFSDGELMRSDAKPCSQLMKQTAGLCTVGGGLAFWILCRLHYGPRITVPRSLRWAACGAASMSATSALLVRLFSPECEPQNIAAYDKG+AAR
Subjt:  MALRRFFGFSDGELMRSDAKPCSQLMKQTAGLCTVGGGLAFWILCRLHYGPRITVPRSLRWAACGAASMSATSALLVRLFSPECEPQNIAAYDKGQAAR

XP_023538321.1 uncharacterized protein LOC111799138 [Cucurbita pepo subsp. pepo]5.4e-4997.98Show/hide
Query:  MALRRFFGFSDGELMRSDAKPCSQLMKQTAGLCTVGGGLAFWILCRLHYGPRITVPRSLRWAACGAASMSATSALLVRLFSPECEPQNIAAYDKGQAAR
        MALRRFFGFSDG+LMRSDAKPCSQLMKQTAGLCTVGGGLAFWILCRLHYGPRITVPRSLRWAACGAASMSATSALLVRLFSPECEPQNIAAYDKG+AAR
Subjt:  MALRRFFGFSDGELMRSDAKPCSQLMKQTAGLCTVGGGLAFWILCRLHYGPRITVPRSLRWAACGAASMSATSALLVRLFSPECEPQNIAAYDKGQAAR

XP_038889141.1 uncharacterized protein LOC120079031 [Benincasa hispida]4.3e-4692.93Show/hide
Query:  MALRRFFGFSDGELMRSDAKPCSQLMKQTAGLCTVGGGLAFWILCRLHYGPRITVPRSLRWAACGAASMSATSALLVRLFSPECEPQNIAAYDKGQAAR
        MALRRF GFSDGE+MRSDAKPCSQLMKQTAGLCTVGGGLAFWILCRLHYGPRITVPRSLRWAACGAASMSATSALLVRLFSPECEPQNIAAYDK +  +
Subjt:  MALRRFFGFSDGELMRSDAKPCSQLMKQTAGLCTVGGGLAFWILCRLHYGPRITVPRSLRWAACGAASMSATSALLVRLFSPECEPQNIAAYDKGQAAR

TrEMBL top hitse value%identityAlignment
A0A1S3BWM4 uncharacterized protein LOC1034939371.6e-4389.58Show/hide
Query:  MALRRFFGFSDGELMRSDAKPCSQLMKQTAGLCTVGGGLAFWILCRLHYGPRITVPRSLRWAACGAASMSATSALLVRLFSPECEPQNIAAYDKGQ
        MALRR  GFSDGE+MRSDAKPCSQLMKQTAGLC+V G L FW+LCRLHYGPRITVPRSLRWAACGAASMSATSALLVRLFSPECEPQNIAAYD+G+
Subjt:  MALRRFFGFSDGELMRSDAKPCSQLMKQTAGLCTVGGGLAFWILCRLHYGPRITVPRSLRWAACGAASMSATSALLVRLFSPECEPQNIAAYDKGQ

A0A1U8BA55 uncharacterized protein LOC1046113041.6e-4389.58Show/hide
Query:  MALRRFFGFSDGELMRSDAKPCSQLMKQTAGLCTVGGGLAFWILCRLHYGPRITVPRSLRWAACGAASMSATSALLVRLFSPECEPQNIAAYDKGQ
        MALRRFFGFSDGELMRSDAKPCS+LM+ TAG+ TVGG LAFW+LCRLHYGPRITVPRSLRWAACGA SMS+TSALLVRLFSPECEPQNIAAYDKG+
Subjt:  MALRRFFGFSDGELMRSDAKPCSQLMKQTAGLCTVGGGLAFWILCRLHYGPRITVPRSLRWAACGAASMSATSALLVRLFSPECEPQNIAAYDKGQ

A0A6J1DQC3 uncharacterized protein LOC1110232542.5e-4489.9Show/hide
Query:  MALRRFFGFSDGELMRSDAKPCSQLMKQTAGLCTVGGGLAFWILCRLHYGPRITVPRSLRWAACGAASMSATSALLVRLFSPECEPQNIAAYDKGQAAR
        MALRR  GFSDGE+MRSDA PC QLMKQTAGLCTVGGGLAFWILCRLHYGPRITVPRSLRWAACGA SMSATSALLVRLFSPECEPQNIAAYDK +  R
Subjt:  MALRRFFGFSDGELMRSDAKPCSQLMKQTAGLCTVGGGLAFWILCRLHYGPRITVPRSLRWAACGAASMSATSALLVRLFSPECEPQNIAAYDKGQAAR

A0A6J1FAF1 uncharacterized protein LOC1114438684.1e-50100Show/hide
Query:  MALRRFFGFSDGELMRSDAKPCSQLMKQTAGLCTVGGGLAFWILCRLHYGPRITVPRSLRWAACGAASMSATSALLVRLFSPECEPQNIAAYDKGQAAR
        MALRRFFGFSDGELMRSDAKPCSQLMKQTAGLCTVGGGLAFWILCRLHYGPRITVPRSLRWAACGAASMSATSALLVRLFSPECEPQNIAAYDKGQAAR
Subjt:  MALRRFFGFSDGELMRSDAKPCSQLMKQTAGLCTVGGGLAFWILCRLHYGPRITVPRSLRWAACGAASMSATSALLVRLFSPECEPQNIAAYDKGQAAR

A0A6J1I1J3 uncharacterized protein LOC1114685991.2e-4998.99Show/hide
Query:  MALRRFFGFSDGELMRSDAKPCSQLMKQTAGLCTVGGGLAFWILCRLHYGPRITVPRSLRWAACGAASMSATSALLVRLFSPECEPQNIAAYDKGQAAR
        MALRRFFGFSDGELMRSDAKPCSQLMKQTAGLCTVGGGLAFWILCRLHYGPRITVPRSLRWAACGAASMSATSALLVRLFSPECEPQNIAAYDKG+AAR
Subjt:  MALRRFFGFSDGELMRSDAKPCSQLMKQTAGLCTVGGGLAFWILCRLHYGPRITVPRSLRWAACGAASMSATSALLVRLFSPECEPQNIAAYDKGQAAR

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
AT1G57540.1 unknown protein6.4e-4078.49Show/hide
Query:  MALRRFFGFSDGELMRSDAKPCSQLMKQTAGLCTVGGGLAFWILCRLHYGPRITVPRSLRWAACGAASMSATSALLVRLFSPECEPQNIAAYD
        MALR+  G+S+G+LMRSDAKPCS+LMKQTA + TVGG L FW+LCRLHYGPRITVPRSLRWA CGA S+S ++A+LVRLFSPECEPQNIAAYD
Subjt:  MALRRFFGFSDGELMRSDAKPCSQLMKQTAGLCTVGGGLAFWILCRLHYGPRITVPRSLRWAACGAASMSATSALLVRLFSPECEPQNIAAYD

AT1G57540.2 unknown protein6.4e-4078.49Show/hide
Query:  MALRRFFGFSDGELMRSDAKPCSQLMKQTAGLCTVGGGLAFWILCRLHYGPRITVPRSLRWAACGAASMSATSALLVRLFSPECEPQNIAAYD
        MALR+  G+S+G+LMRSDAKPCS+LMKQTA + TVGG L FW+LCRLHYGPRITVPRSLRWA CGA S+S ++A+LVRLFSPECEPQNIAAYD
Subjt:  MALRRFFGFSDGELMRSDAKPCSQLMKQTAGLCTVGGGLAFWILCRLHYGPRITVPRSLRWAACGAASMSATSALLVRLFSPECEPQNIAAYD

AT1G57540.3 unknown protein6.4e-4078.49Show/hide
Query:  MALRRFFGFSDGELMRSDAKPCSQLMKQTAGLCTVGGGLAFWILCRLHYGPRITVPRSLRWAACGAASMSATSALLVRLFSPECEPQNIAAYD
        MALR+  G+S+G+LMRSDAKPCS+LMKQTA + TVGG L FW+LCRLHYGPRITVPRSLRWA CGA S+S ++A+LVRLFSPECEPQNIAAYD
Subjt:  MALRRFFGFSDGELMRSDAKPCSQLMKQTAGLCTVGGGLAFWILCRLHYGPRITVPRSLRWAACGAASMSATSALLVRLFSPECEPQNIAAYD


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGCGCTTAGACGGTTCTTTGGTTTTTCTGATGGTGAGCTAATGAGATCGGACGCTAAACCGTGTTCACAGTTGATGAAACAGACTGCTGGATTATGTACTGTT
GGAGGAGGACTTGCATTCTGGATTCTTTGCAGATTACACTATGGTCCAAGAATTACAGTTCCTAGGAGTCTGCGTTGGGCAGCTTGTGGAGCAGCATCAATGAGT
GCGACCTCGGCTTTGCTTGTTCGATTGTTTAGTCCAGAATGTGAACCTCAGAACATTGCTGCATATGACAAAGGGCAAGCTGCAAGGTAA
mRNA sequenceShow/hide mRNA sequence
AAAAAATATTTAGTTCATCAGCGCAGCCCCAAATTCTGCGCCAGTATCTTCTTCTTCGCTAGTCACATTACGCGTTCGATTTCAGTCCTCTCTGTAATTCCGAAG
CTCAGAGTCTGGGACCGGCGGCGGCAGAAGCACCGGCTACGCCCAAATTGCATTCGCCGTTGTTCTTCAGGAATTTAGCAGATGGCGCTTAGACGGTTCTTTGGT
TTTTCTGATGGTGAGCTAATGAGATCGGACGCTAAACCGTGTTCACAGTTGATGAAACAGACTGCTGGATTATGTACTGTTGGAGGAGGACTTGCATTCTGGATT
CTTTGCAGATTACACTATGGTCCAAGAATTACAGTTCCTAGGAGTCTGCGTTGGGCAGCTTGTGGAGCAGCATCAATGAGTGCGACCTCGGCTTTGCTTGTTCGA
TTGTTTAGTCCAGAATGTGAACCTCAGAACATTGCTGCATATGACAAAGGGCAAGCTGCAAGGTAATTGACATTCAAAGCGCAATGATCTTAGTGTATTGCTTTT
GAAGTTACAATTTTGTGTTTATGGTTGAGTACGTGATAGTTAACTATCTTGCCACGCACTCGGTTCGTTCATGGCTCCATACAACCATGTATTCAGTTACGTTGT
TATTGTTAAGTTTCTCGACTCTTGTCATAGCTAAGGAGAAATTATTGGACGGAGTATGTTACAATGTGACAATGGCTTTGCAAAATGTATTTTCATAGGGACTAA
ATTGGTAACTTAATTTTAGATGTCGTATCGAGCTTTATATATTCCGACCCCATTAGTTGCTTGTTGGGGGTGGTTTCGAAAGTAGAATTAAAGTGACTCCAATTC
CATTTCTTGAGTAGACATTTTTGTTATTTTCCCC
Protein sequenceShow/hide protein sequence
MALRRFFGFSDGELMRSDAKPCSQLMKQTAGLCTVGGGLAFWILCRLHYGPRITVPRSLRWAACGAASMSATSALLVRLFSPECEPQNIAAYDKGQAAR