; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

CmoCh12G009000 (gene) of Cucurbita moschata (Rifu) v1 genome

Gene IDCmoCh12G009000
OrganismCucurbita moschata Rifu (Cucurbita moschata (Rifu) v1)
Descriptiontranscription factor bHLH146-like
Genome locationCmo_Chr12:8288819..8289349
RNA-Seq ExpressionCmoCh12G009000
SyntenyCmoCh12G009000
Gene Ontology termsGO:0006355 - regulation of transcription, DNA-templated (biological process)
GO:0005634 - nucleus (cellular component)
GO:0046983 - protein dimerization activity (molecular function)
InterPro domainsIPR036638 - Helix-loop-helix DNA-binding domain superfamily
IPR044660 - Transcription factor IBH1-like


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG6586090.1 Transcription factor basic helix-loop-helix 146, partial [Cucurbita argyrosperma subsp. sororia]2.5e-8998.86Show/hide
Query:  MGRQILRKRKRVLSLEPNKLAYTMFARNYVKYLMTSLPKISHHHQQHQEQNFQKLVKFEVDMAMAQSATEFSWGNALKKKLLQREDGNGSNGFGLSLQRV
        MGRQILRKRKRVLSLEPNKLAYTMFARNYVKYLMTSLPKISHHHQQHQEQ+FQKLVKFEVDMAMAQSATEFSWGNALKKKLLQREDGNGSNGFGLSLQRV
Subjt:  MGRQILRKRKRVLSLEPNKLAYTMFARNYVKYLMTSLPKISHHHQQHQEQNFQKLVKFEVDMAMAQSATEFSWGNALKKKLLQREDGNGSNGFGLSLQRV

Query:  KFSRENLEREDEEHEEREEHEERKIENGLMKLRKIVPGGSNGELEEDDLFKQTESYIKCLELQVNVLRCLVDTNTN
        KF+RENLEREDEEHEEREEHEERKIENGLMKLRKIVPGGSNGELEEDDLFKQTESYIKCLELQVNVLRCLVDTNTN
Subjt:  KFSRENLEREDEEHEEREEHEERKIENGLMKLRKIVPGGSNGELEEDDLFKQTESYIKCLELQVNVLRCLVDTNTN

KAG7020915.1 hypothetical protein SDJN02_17603, partial [Cucurbita argyrosperma subsp. argyrosperma]5.1e-5899.18Show/hide
Query:  MTSLPKISHHHQQHQEQNFQKLVKFEVDMAMAQSATEFSWGNALKKKLLQREDGNGSNGFGLSLQRVKFSRENLEREDEEHEEREEHEERKIENGLMKLR
        MTSLPKISHHHQQHQEQNFQKLVKFEVDMAMAQSATEFSWGNALKKKLLQREDGNGSNGFGLSLQRVKFSRENLER DEEHEEREEHEERKIENGLMKLR
Subjt:  MTSLPKISHHHQQHQEQNFQKLVKFEVDMAMAQSATEFSWGNALKKKLLQREDGNGSNGFGLSLQRVKFSRENLEREDEEHEEREEHEERKIENGLMKLR

Query:  KIVPGGSNGELEEDDLFKQTES
        KIVPGGSNGELEEDDLFKQTES
Subjt:  KIVPGGSNGELEEDDLFKQTES

XP_022938205.1 transcription factor bHLH146-like [Cucurbita moschata]3.0e-90100Show/hide
Query:  MGRQILRKRKRVLSLEPNKLAYTMFARNYVKYLMTSLPKISHHHQQHQEQNFQKLVKFEVDMAMAQSATEFSWGNALKKKLLQREDGNGSNGFGLSLQRV
        MGRQILRKRKRVLSLEPNKLAYTMFARNYVKYLMTSLPKISHHHQQHQEQNFQKLVKFEVDMAMAQSATEFSWGNALKKKLLQREDGNGSNGFGLSLQRV
Subjt:  MGRQILRKRKRVLSLEPNKLAYTMFARNYVKYLMTSLPKISHHHQQHQEQNFQKLVKFEVDMAMAQSATEFSWGNALKKKLLQREDGNGSNGFGLSLQRV

Query:  KFSRENLEREDEEHEEREEHEERKIENGLMKLRKIVPGGSNGELEEDDLFKQTESYIKCLELQVNVLRCLVDTNTN
        KFSRENLEREDEEHEEREEHEERKIENGLMKLRKIVPGGSNGELEEDDLFKQTESYIKCLELQVNVLRCLVDTNTN
Subjt:  KFSRENLEREDEEHEEREEHEERKIENGLMKLRKIVPGGSNGELEEDDLFKQTESYIKCLELQVNVLRCLVDTNTN

XP_022969610.1 transcription factor bHLH146-like [Cucurbita maxima]2.7e-8394.41Show/hide
Query:  MGRQILRKRKRVLSLEPNKLAYTMFARNYVKYLMTSLPKISHHHQQHQEQNFQKLVKFEVDMAMAQSATEFSWGNALKKKLLQREDGNGSNGFGLSLQRV
        MGRQILRKRKRVLSLEP+KLAYTMFARNYVKYLMTSLPKISHHHQQHQ+QNFQKLVKFEVDMAMAQSATEFSWGNALKKKLLQRED NGSNGFG SL  V
Subjt:  MGRQILRKRKRVLSLEPNKLAYTMFARNYVKYLMTSLPKISHHHQQHQEQNFQKLVKFEVDMAMAQSATEFSWGNALKKKLLQREDGNGSNGFGLSLQRV

Query:  KFSRENLEREDEEHEEREEH---EERKIENGLMKLRKIVPGGSNGELEEDDLFKQTESYIKCLELQVNVLRCLVDTNTN
        KFSRENLEREDEEHEE EEH   EERKIENGLMKLRKIVPGGSNGELEEDDLFKQTESYIKCLELQVNVLRCLVDTNTN
Subjt:  KFSRENLEREDEEHEEREEH---EERKIENGLMKLRKIVPGGSNGELEEDDLFKQTESYIKCLELQVNVLRCLVDTNTN

XP_023538247.1 transcription factor bHLH146-like [Cucurbita pepo subsp. pepo]3.5e-8394.89Show/hide
Query:  MGRQILRKRKRVLSLEPNKLAYTMFARNYVKYLMTSLPKISHHHQQHQEQNFQKLVKFEVDMAMAQSATEFSWGNALKKKLLQREDGNGSNGFGLSLQRV
        MGRQILRKRKRVLSLEPNKLAYTMFARNYVKYLMTSLPKISHHHQQHQEQNFQKLVKFEVDMAMAQSATEFSWGNALKKKLLQREDGNGSNGFG SLQ V
Subjt:  MGRQILRKRKRVLSLEPNKLAYTMFARNYVKYLMTSLPKISHHHQQHQEQNFQKLVKFEVDMAMAQSATEFSWGNALKKKLLQREDGNGSNGFGLSLQRV

Query:  KFSRENLEREDEEHEEREEHEERKIENGLMKLRKIVPGGSNGELEEDDLFKQTESYIKCLELQVNVLRCLVDTNTN
        KFS+ENLERE EEHEER   +E KIENGLMKLRKIVPGGSNGELEEDDLFKQTESYIKCLELQVNVLRCLVDTNTN
Subjt:  KFSRENLEREDEEHEEREEHEERKIENGLMKLRKIVPGGSNGELEEDDLFKQTESYIKCLELQVNVLRCLVDTNTN

TrEMBL top hitse value%identityAlignment
A0A0A0LJA7 Uncharacterized protein4.5e-5268.82Show/hide
Query:  MGRQILRKRKRVLSLEPNKLAYTMFARNYVKYLMTSLPKISHHHQQHQEQNFQKLVKFEVDMAMAQSATEFSWGNALKKKLLQRED---GNGS-NGFGLS
        M R+++RK +RV S+EP+K+AYTMF RNYVK+LMTSL KISH   Q Q+QNF+KLVKFEVDMAMAQSA+EFSWG ALKKKLLQR+    GNG+ NGF  S
Subjt:  MGRQILRKRKRVLSLEPNKLAYTMFARNYVKYLMTSLPKISHHHQQHQEQNFQKLVKFEVDMAMAQSATEFSWGNALKKKLLQRED---GNGS-NGFGLS

Query:  LQRV-KFSRENLEREDEE-HEEREEHEERKIENGLMKLRKIVPGGSN----GEL-EEDDLFKQTESYIKCLELQVNVLRCLVDTNT
        +Q V K S+ENL  E+E+ H E EE EE ++ENGLMKLRKI+PGG N    G L EEDDL KQTESY+KCLELQVNVLR LV+TNT
Subjt:  LQRV-KFSRENLEREDEE-HEEREEHEERKIENGLMKLRKIVPGGSN----GEL-EEDDLFKQTESYIKCLELQVNVLRCLVDTNT

A0A1S4DZN3 uncharacterized protein At4g301801.1e-5367.71Show/hide
Query:  MGRQILRKRKRVLSLEPNKLAYTMFARNYVKYLMTSLPKISHHHQQHQEQNFQKLVKFEVDMAMAQSATEFSWGNALKKKLLQRED-----GNGS-NGFG
        M R+I+RK +RV S+EPNK+AYTMFARNYVK+LMTSL KISH   Q Q+QNFQKLV+FEVDMAMAQSA+EFSWG ALKKKLLQR+D     GNGS NGF 
Subjt:  MGRQILRKRKRVLSLEPNKLAYTMFARNYVKYLMTSLPKISHHHQQHQEQNFQKLVKFEVDMAMAQSATEFSWGNALKKKLLQRED-----GNGS-NGFG

Query:  LSLQRV-KFSRENLEREDEEH----EEREEHEERKIENGLMKLRKIVPGGSNGEL------EEDDLFKQTESYIKCLELQVNVLRCLVDTNT
         SLQ + K S +NL  E+E+H    EE EE EE ++ENGLMKLRKI+PGG +  +      EEDDL KQTESY+KCLELQVNVLR LV+TNT
Subjt:  LSLQRV-KFSRENLEREDEEH----EEREEHEERKIENGLMKLRKIVPGGSNGEL------EEDDLFKQTESYIKCLELQVNVLRCLVDTNT

A0A6J1DIU0 transcription factor bHLH1461.2e-5267.03Show/hide
Query:  MGRQILRKRKRVLSLEPNKLAYTMFARNYVKYLMTSLPKISHHHQQHQEQNFQKLVKFEVDMAMAQSATEFSWGNALKKKLLQRED---GNGSNGFGLSL
        MGRQI+RKR+RV SLEPNKL Y MFARNY K LM SL KIS +H     QN QK+VKFEVDMAMA SA+EF+WG+ALK+KLLQ+++   GNG N F  SL
Subjt:  MGRQILRKRKRVLSLEPNKLAYTMFARNYVKYLMTSLPKISHHHQQHQEQNFQKLVKFEVDMAMAQSATEFSWGNALKKKLLQRED---GNGSNGFGLSL

Query:  QRVKFSRENLEREDEEHEEREEHEERKIENGLMKLRKIVPGG-----SNGE-LEEDDLFKQTESYIKCLELQVNVLRCLVDTNTN
        Q +KFSRE         EE EE +++K+ENGL+KLRKI+PGG     SNG+ LEEDDL KQTESYIKCLELQVNVLRCLVDTNT+
Subjt:  QRVKFSRENLEREDEEHEEREEHEERKIENGLMKLRKIVPGG-----SNGE-LEEDDLFKQTESYIKCLELQVNVLRCLVDTNTN

A0A6J1FJ33 transcription factor bHLH146-like1.4e-90100Show/hide
Query:  MGRQILRKRKRVLSLEPNKLAYTMFARNYVKYLMTSLPKISHHHQQHQEQNFQKLVKFEVDMAMAQSATEFSWGNALKKKLLQREDGNGSNGFGLSLQRV
        MGRQILRKRKRVLSLEPNKLAYTMFARNYVKYLMTSLPKISHHHQQHQEQNFQKLVKFEVDMAMAQSATEFSWGNALKKKLLQREDGNGSNGFGLSLQRV
Subjt:  MGRQILRKRKRVLSLEPNKLAYTMFARNYVKYLMTSLPKISHHHQQHQEQNFQKLVKFEVDMAMAQSATEFSWGNALKKKLLQREDGNGSNGFGLSLQRV

Query:  KFSRENLEREDEEHEEREEHEERKIENGLMKLRKIVPGGSNGELEEDDLFKQTESYIKCLELQVNVLRCLVDTNTN
        KFSRENLEREDEEHEEREEHEERKIENGLMKLRKIVPGGSNGELEEDDLFKQTESYIKCLELQVNVLRCLVDTNTN
Subjt:  KFSRENLEREDEEHEEREEHEERKIENGLMKLRKIVPGGSNGELEEDDLFKQTESYIKCLELQVNVLRCLVDTNTN

A0A6J1I0E6 transcription factor bHLH146-like1.3e-8394.41Show/hide
Query:  MGRQILRKRKRVLSLEPNKLAYTMFARNYVKYLMTSLPKISHHHQQHQEQNFQKLVKFEVDMAMAQSATEFSWGNALKKKLLQREDGNGSNGFGLSLQRV
        MGRQILRKRKRVLSLEP+KLAYTMFARNYVKYLMTSLPKISHHHQQHQ+QNFQKLVKFEVDMAMAQSATEFSWGNALKKKLLQRED NGSNGFG SL  V
Subjt:  MGRQILRKRKRVLSLEPNKLAYTMFARNYVKYLMTSLPKISHHHQQHQEQNFQKLVKFEVDMAMAQSATEFSWGNALKKKLLQREDGNGSNGFGLSLQRV

Query:  KFSRENLEREDEEHEEREEH---EERKIENGLMKLRKIVPGGSNGELEEDDLFKQTESYIKCLELQVNVLRCLVDTNTN
        KFSRENLEREDEEHEE EEH   EERKIENGLMKLRKIVPGGSNGELEEDDLFKQTESYIKCLELQVNVLRCLVDTNTN
Subjt:  KFSRENLEREDEEHEEREEH---EERKIENGLMKLRKIVPGGSNGELEEDDLFKQTESYIKCLELQVNVLRCLVDTNTN

SwissProt top hitse value%identityAlignment
Q9SKX1 Transcription factor IBH12.0e-0433.63Show/hide
Query:  VDMAMAQSATEFSWGNALKKKLLQREDGNGSNGFGLSLQRVKFSRENLEREDEEHEEREEHEERKIENGLMKLRKIVPGGSNGELEEDDLFKQTESYIKC
        V MA A   +   W  A    LL+R D + +       + V+FSR   +   +    R       +E    +LR +VPGG  G +E   L ++T  YIKC
Subjt:  VDMAMAQSATEFSWGNALKKKLLQREDGNGSNGFGLSLQRVKFSRENLEREDEEHEEREEHEERKIENGLMKLRKIVPGGSNGELEEDDLFKQTESYIKC

Query:  LELQVNVLRCLVD
        L +QV V++CLVD
Subjt:  LELQVNVLRCLVD

Q9SUM5 Transcription factor bHLH1462.7e-1736.57Show/hide
Query:  MGRQILRKRKRVLSLEPNKLAYTMFARNYVKYLMTSLPKISHHHQQHQEQNFQKLVKFEVDMAMAQSATEFSWGNALKKKLLQREDGNGSNGFGLSLQRV
        M RQI+ ++KRV SLEPNK    +F R Y  +L+ +L K++ +     + + ++ VK EVDMA+A SA EF+W   L +KL      N +     S   +
Subjt:  MGRQILRKRKRVLSLEPNKLAYTMFARNYVKYLMTSLPKISHHHQQHQEQNFQKLVKFEVDMAMAQSATEFSWGNALKKKLLQREDGNGSNGFGLSLQRV

Query:  KFSRENLEREDEEHEEREEHEERKIENGLMKLRKIVPGGSNGELEEDDLFKQTESYIKCLELQVNVLRCLVDTNT
        +     LER D+E      +EE  IE  L +L+K++PGG   E+  +++  +  +YIKCLELQ   L+ +V  +T
Subjt:  KFSRENLEREDEEHEEREEHEERKIENGLMKLRKIVPGGSNGELEEDDLFKQTESYIKCLELQVNVLRCLVDTNT

Arabidopsis top hitse value%identityAlignment
AT2G18969.1 BEST Arabidopsis thaliana protein match is: sequence-specific DNA binding transcription factors4.8e-2239.13Show/hide
Query:  MGRQILRKRKRVLSLEPNKLAYTMFARNYVKYLMTSLPKISHHHQQHQ--EQNFQKLVKFEVDMAMAQSATEFSWGNALKKKLLQREDGNGSNGFGLSLQ
        M RQI+ KRKRV SL+PNK    +FAR YV +L+ +L KI+ +    +  +Q+ ++ VK EVDMA A SA EF+W   L++KLL       S+ +   + 
Subjt:  MGRQILRKRKRVLSLEPNKLAYTMFARNYVKYLMTSLPKISHHHQQHQ--EQNFQKLVKFEVDMAMAQSATEFSWGNALKKKLLQREDGNGSNGFGLSLQ

Query:  RVKFSRENLERED-----EEHEEREEHEE-RKIENGLMKLRKIVPGGSNGELEEDDLFKQTESYIKCLELQVNVLRCLVDTNTN
              E LER       E+H++ +E EE  +I+  L +L+K++PGG   E+  +++  +  SYI CLELQ+ VL+ +V  NT+
Subjt:  RVKFSRENLERED-----EEHEEREEHEE-RKIENGLMKLRKIVPGGSNGELEEDDLFKQTESYIKCLELQVNVLRCLVDTNTN

AT2G43060.1 ILI1 binding bHLH 11.4e-0533.63Show/hide
Query:  VDMAMAQSATEFSWGNALKKKLLQREDGNGSNGFGLSLQRVKFSRENLEREDEEHEEREEHEERKIENGLMKLRKIVPGGSNGELEEDDLFKQTESYIKC
        V MA A   +   W  A    LL+R D + +       + V+FSR   +   +    R       +E    +LR +VPGG  G +E   L ++T  YIKC
Subjt:  VDMAMAQSATEFSWGNALKKKLLQREDGNGSNGFGLSLQRVKFSRENLEREDEEHEEREEHEERKIENGLMKLRKIVPGGSNGELEEDDLFKQTESYIKC

Query:  LELQVNVLRCLVD
        L +QV V++CLVD
Subjt:  LELQVNVLRCLVD

AT4G30180.1 sequence-specific DNA binding transcription factors;transcription regulators1.9e-1836.57Show/hide
Query:  MGRQILRKRKRVLSLEPNKLAYTMFARNYVKYLMTSLPKISHHHQQHQEQNFQKLVKFEVDMAMAQSATEFSWGNALKKKLLQREDGNGSNGFGLSLQRV
        M RQI+ ++KRV SLEPNK    +F R Y  +L+ +L K++ +     + + ++ VK EVDMA+A SA EF+W   L +KL      N +     S   +
Subjt:  MGRQILRKRKRVLSLEPNKLAYTMFARNYVKYLMTSLPKISHHHQQHQEQNFQKLVKFEVDMAMAQSATEFSWGNALKKKLLQREDGNGSNGFGLSLQRV

Query:  KFSRENLEREDEEHEEREEHEERKIENGLMKLRKIVPGGSNGELEEDDLFKQTESYIKCLELQVNVLRCLVDTNT
        +     LER D+E      +EE  IE  L +L+K++PGG   E+  +++  +  +YIKCLELQ   L+ +V  +T
Subjt:  KFSRENLEREDEEHEEREEHEERKIENGLMKLRKIVPGGSNGELEEDDLFKQTESYIKCLELQVNVLRCLVDTNT


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGGAAGGCAAATTTTGAGAAAAAGAAAAAGGGTTCTTTCCCTTGAACCAAACAAACTTGCTTACACCATGTTTGCAAGAAACTATGTCAAATATTTGATGACATCTTT
ACCCAAAATCTCTCATCATCATCAACAACATCAAGAACAAAATTTTCAGAAGCTTGTGAAGTTTGAGGTTGACATGGCAATGGCTCAATCAGCAACTGAGTTTTCATGGG
GCAATGCTCTTAAAAAGAAGCTTCTTCAAAGAGAAGATGGCAATGGGAGTAATGGGTTTGGTCTCTCTCTCCAAAGGGTGAAATTTTCTCGAGAAAATTTAGAGAGAGAA
GACGAAGAACACGAAGAACGCGAAGAACACGAAGAACGAAAGATAGAAAATGGGCTGATGAAGCTGAGAAAAATCGTCCCGGGTGGTTCAAATGGAGAATTGGAAGAAGA
TGATTTGTTCAAACAAACTGAGAGTTATATAAAATGTCTTGAGTTGCAGGTCAATGTTCTTAGATGTTTGGTTGATACAAACACAAATTAA
mRNA sequenceShow/hide mRNA sequence
ATGGGAAGGCAAATTTTGAGAAAAAGAAAAAGGGTTCTTTCCCTTGAACCAAACAAACTTGCTTACACCATGTTTGCAAGAAACTATGTCAAATATTTGATGACATCTTT
ACCCAAAATCTCTCATCATCATCAACAACATCAAGAACAAAATTTTCAGAAGCTTGTGAAGTTTGAGGTTGACATGGCAATGGCTCAATCAGCAACTGAGTTTTCATGGG
GCAATGCTCTTAAAAAGAAGCTTCTTCAAAGAGAAGATGGCAATGGGAGTAATGGGTTTGGTCTCTCTCTCCAAAGGGTGAAATTTTCTCGAGAAAATTTAGAGAGAGAA
GACGAAGAACACGAAGAACGCGAAGAACACGAAGAACGAAAGATAGAAAATGGGCTGATGAAGCTGAGAAAAATCGTCCCGGGTGGTTCAAATGGAGAATTGGAAGAAGA
TGATTTGTTCAAACAAACTGAGAGTTATATAAAATGTCTTGAGTTGCAGGTCAATGTTCTTAGATGTTTGGTTGATACAAACACAAATTAA
Protein sequenceShow/hide protein sequence
MGRQILRKRKRVLSLEPNKLAYTMFARNYVKYLMTSLPKISHHHQQHQEQNFQKLVKFEVDMAMAQSATEFSWGNALKKKLLQREDGNGSNGFGLSLQRVKFSRENLERE
DEEHEEREEHEERKIENGLMKLRKIVPGGSNGELEEDDLFKQTESYIKCLELQVNVLRCLVDTNTN