CuGenDBv2

Gene ID	CmoCh12G009010
Organism	Cucurbita moschata Rifu (Cucurbita moschata (Rifu) v1)
Description	La-related protein 6 isoform 1
Genome location	Cmo_Chr12:8296126..8298394
RNA-Seq Expression	CmoCh12G009010
Synteny	CmoCh12G009010
Gene Ontology terms	GO:0034599 - cellular response to oxidative stress (biological process) GO:0071470 - cellular response to osmotic stress (biological process) GO:0005783 - endoplasmic reticulum (cellular component) GO:0016021 - integral component of membrane (cellular component)
InterPro domains	NA

Homology

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GenBank top hits

e value

%identity

Alignment

KAG7020916.1 hypothetical protein SDJN02_17604 [Cucurbita argyrosperma subsp. argyrosperma]

3.8e-99

99.48

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Query:  MSLASSQLSFLSTTLSFSSAPTPRRSNNILHSFHPIIASKLPPPADDPNGLERGNENRLAKLAIVTLAAGVLSLGSVHDASAAKTGGRVGGQAFRSAAPR
        MSLASSQLSFLSTTLSFSSAPTPRRSNNILHSFHPIIASKLPP ADDPNGLERGNENRLAKLAIVTLAAGVLSLGSVHDASAAKTGGRVGGQAFRSAAPR
Subjt:  MSLASSQLSFLSTTLSFSSAPTPRRSNNILHSFHPIIASKLPPPADDPNGLERGNENRLAKLAIVTLAAGVLSLGSVHDASAAKTGGRVGGQAFRSAAPR

Query:  SSSPRINNNSRTNIYINPRVAPPLVGGYGYGVPYYGGGWGWSPFSFFAPTPSVAVGIGGGFDVLVLFIFLGTVAAFVRRFLGGRGEDDDDY
        SSSPRINNNSRTNIYINPRVAPPLVGGYGYGVPYYGGGWGWSPFSFFAPTPSVAVGIGGGFDVLVLFIFLGTVAAFVRRFLGGRGEDDDDY
Subjt:  SSSPRINNNSRTNIYINPRVAPPLVGGYGYGVPYYGGGWGWSPFSFFAPTPSVAVGIGGGFDVLVLFIFLGTVAAFVRRFLGGRGEDDDDY

XP_022938204.1 uncharacterized protein LOC111444353 [Cucurbita moschata]

3.4e-100

100

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Query:  MSLASSQLSFLSTTLSFSSAPTPRRSNNILHSFHPIIASKLPPPADDPNGLERGNENRLAKLAIVTLAAGVLSLGSVHDASAAKTGGRVGGQAFRSAAPR
        MSLASSQLSFLSTTLSFSSAPTPRRSNNILHSFHPIIASKLPPPADDPNGLERGNENRLAKLAIVTLAAGVLSLGSVHDASAAKTGGRVGGQAFRSAAPR
Subjt:  MSLASSQLSFLSTTLSFSSAPTPRRSNNILHSFHPIIASKLPPPADDPNGLERGNENRLAKLAIVTLAAGVLSLGSVHDASAAKTGGRVGGQAFRSAAPR

Query:  SSSPRINNNSRTNIYINPRVAPPLVGGYGYGVPYYGGGWGWSPFSFFAPTPSVAVGIGGGFDVLVLFIFLGTVAAFVRRFLGGRGEDDDDY
        SSSPRINNNSRTNIYINPRVAPPLVGGYGYGVPYYGGGWGWSPFSFFAPTPSVAVGIGGGFDVLVLFIFLGTVAAFVRRFLGGRGEDDDDY
Subjt:  SSSPRINNNSRTNIYINPRVAPPLVGGYGYGVPYYGGGWGWSPFSFFAPTPSVAVGIGGGFDVLVLFIFLGTVAAFVRRFLGGRGEDDDDY

XP_022969609.1 uncharacterized protein LOC111468585 [Cucurbita maxima]

2.5e-98

98.43

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Query:  MSLASSQLSFLSTTLSFSSAPTPRRSNNILHSFHPIIASKLPPPADDPNGLERGNENRLAKLAIVTLAAGVLSLGSVHDASAAKTGGRVGGQAFRSAAPR
        MSLASSQLSFLSTTLSFSSAPTPRRSNNILHSFHPIIASKLPPPAD+PNGLERGNENRLAKLAIVTLAAGVL+LGSVHDASAAKTGGRVGGQAFRSAAPR
Subjt:  MSLASSQLSFLSTTLSFSSAPTPRRSNNILHSFHPIIASKLPPPADDPNGLERGNENRLAKLAIVTLAAGVLSLGSVHDASAAKTGGRVGGQAFRSAAPR

Query:  SSSPRINNNSRTNIYINPRVAPPLVGGYGYGVPYYGGGWGWSPFSFFAPTPSVAVGIGGGFDVLVLFIFLGTVAAFVRRFLGGRGEDDDDY
        SSSPRINNNSRTNIYINPRVAPPLVGGYGYGVPYYGGGWGWSPFSFFAPTPSVAVGIGGGFDVLVLFIFLGTVAAFVRRFLGGR EDDDDY
Subjt:  SSSPRINNNSRTNIYINPRVAPPLVGGYGYGVPYYGGGWGWSPFSFFAPTPSVAVGIGGGFDVLVLFIFLGTVAAFVRRFLGGRGEDDDDY

XP_023536753.1 uncharacterized protein LOC111798034 [Cucurbita pepo subsp. pepo]

2.2e-99

100

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Query:  MSLASSQLSFLSTTLSFSSAPTPRRSNNILHSFHPIIASKLPPPADDPNGLERGNENRLAKLAIVTLAAGVLSLGSVHDASAAKTGGRVGGQAFRSAAPR
        MSLASSQLSFLSTTLSFSSAPTPRRSNNILHSFHPIIASKLPPPADDPNGLERGNENRLAKLAIVTLAAGVLSLGSVHDASAAKTGGRVGGQAFRSAAPR
Subjt:  MSLASSQLSFLSTTLSFSSAPTPRRSNNILHSFHPIIASKLPPPADDPNGLERGNENRLAKLAIVTLAAGVLSLGSVHDASAAKTGGRVGGQAFRSAAPR

Query:  SSSPRINNNSRTNIYINPRVAPPLVGGYGYGVPYYGGGWGWSPFSFFAPTPSVAVGIGGGFDVLVLFIFLGTVAAFVRRFLGGRGEDDDD
        SSSPRINNNSRTNIYINPRVAPPLVGGYGYGVPYYGGGWGWSPFSFFAPTPSVAVGIGGGFDVLVLFIFLGTVAAFVRRFLGGRGEDDDD
Subjt:  SSSPRINNNSRTNIYINPRVAPPLVGGYGYGVPYYGGGWGWSPFSFFAPTPSVAVGIGGGFDVLVLFIFLGTVAAFVRRFLGGRGEDDDD

XP_038889537.1 uncharacterized protein LOC120079434 isoform X1 [Benincasa hispida]

8.2e-78

84.62

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Query:  MSLASSQLSFLSTTLSFS-SAPTPRRSNNILHSFHPIIASKLPPPADDPNG-LERGNENRLAKLAIVTLAAGVLSLGSVHDASAAKTGGRVGGQAFRSAA
        MSLASSQLSFLST  SFS S  TPRR+NN+LHS +  ++ KLPP ADDPNG L RG+ENRLAKLAIVTLAAGVL+LGSVHDASAAKTGGRVGGQAFRSAA
Subjt:  MSLASSQLSFLSTTLSFS-SAPTPRRSNNILHSFHPIIASKLPPPADDPNG-LERGNENRLAKLAIVTLAAGVLSLGSVHDASAAKTGGRVGGQAFRSAA

Query:  PRSSSPRINNNSRTNIYINPRVAPPLVGGY--GYGVPYYGGGWGWSPFSFFAPTPSVAVGIGGGFDVLVLFIFLGTVAAFVRRFLGGRGEDDDDY
        PRSSSPRINNNSRTNIYINPRVAPPLVGGY  GYGVPYY GGWGWSPFSFFAP+P+VAVGIGGGFD+L LFI LGTVAAFVRRF  GR EDDDDY
Subjt:  PRSSSPRINNNSRTNIYINPRVAPPLVGGY--GYGVPYYGGGWGWSPFSFFAPTPSVAVGIGGGFDVLVLFIFLGTVAAFVRRFLGGRGEDDDDY

TrEMBL top hits

e value

%identity

Alignment

A0A0A0LGT3 Uncharacterized protein

3.0e-73

78.35

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Query:  MSLASSQLSFLSTTLSFSSAPTPRRSNN--ILHSFHPIIASKLPPPADDPNGLERGNENRLAKLAIVTLAAGVLSLGSVHDASAAKTGGRVGGQAFRSAA
        MSL SSQL+FLST  SFSS   P R++N  +LHS +P+I+ KLPPP+ DP    +GNENR+A LAIVTL AGVL+LGSVHDASAAKTGGRVGGQAFRSAA
Subjt:  MSLASSQLSFLSTTLSFSSAPTPRRSNN--ILHSFHPIIASKLPPPADDPNGLERGNENRLAKLAIVTLAAGVLSLGSVHDASAAKTGGRVGGQAFRSAA

Query:  PRSSSPRINNNSRTNIYINPRVAPPLVG-GYGYGVPYYGGGWGWSPFSFFAPTPSVAVGIGGGFDVLVLFIFLGTVAAFVRRFLGGRGEDDDDY
        PR SSPRINNNSRTNIYINPRVAPPL G GYGYGVPYYGGGWGWSPFSFFAP+P+VAVGIGGG DVL  FI LGTVAAFVRR  G R EDDDDY
Subjt:  PRSSSPRINNNSRTNIYINPRVAPPLVG-GYGYGVPYYGGGWGWSPFSFFAPTPSVAVGIGGGFDVLVLFIFLGTVAAFVRRFLGGRGEDDDDY

A0A5A7U097 La-related protein 6 isoform 1

3.4e-69

75.13

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Query:  MSLASSQLSFLSTTLSFSSAPTPRRSNNILHSFHPIIASKLPPPADDPNGLERGNENRLAKLAIVTLAAGVLSLGSVHDASAAKTGGRVGGQAFRSAAPR
        MSL SSQLSFLST  SFS +P    +  +L+S   +++ KLPP +DDP    +GNENR+AKLAIVTL AG+L+LGSVHDASAAKTGGRVGGQAFRSAAPR
Subjt:  MSLASSQLSFLSTTLSFSSAPTPRRSNNILHSFHPIIASKLPPPADDPNGLERGNENRLAKLAIVTLAAGVLSLGSVHDASAAKTGGRVGGQAFRSAAPR

Query:  SSSPRINNNSRTNIYINPRVAPPLVGGY--GYGVPYYGGGWGWSPFSFFAPTPSVAVGIGGGFDVLVLFIFLGTVAAFVRRFLGGRGEDDDDY
         SSPRINNNSRTNIYINPRVAPPLVGGY  GYGVPYY GGWGWSPFSFFAP+P+VAVGIGGG DVL  FI LG+VAAFVR+ LG R  DDDDY
Subjt:  SSSPRINNNSRTNIYINPRVAPPLVGGY--GYGVPYYGGGWGWSPFSFFAPTPSVAVGIGGGFDVLVLFIFLGTVAAFVRRFLGGRGEDDDDY

A0A6J1DIH1 uncharacterized protein LOC111020818

3.1e-70

76.5

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Query:  MSLASSQLSFLSTTLSFSSAPT---PRRSNNILHSFHPIIASKLPPPADDPNGLE----RGNENRLAKLAIVTLAAGVLSLGSVHDASAAKTGGRVGGQA
        M+LASSQ SFL+  LS ++A     PRR   +LHS +  ++SKL PPADDP+G       GNENRLAKLAIVTLAAGVL+LGSVHDASAAKTGGRVGGQA
Subjt:  MSLASSQLSFLSTTLSFSSAPT---PRRSNNILHSFHPIIASKLPPPADDPNGLE----RGNENRLAKLAIVTLAAGVLSLGSVHDASAAKTGGRVGGQA

Query:  FRSAAPRSSSPRINNNSRTNIYINPRVAPPLVGGY--GYGVPYYGGGWGWSPFSFFAPTPSVAVGIGGGFDVLVLFIFLGTVAAFVRRFLGGRGEDDDDY
        FRSAAPR SSPRINNNSRTNIYINP VAPPLVGGY  GYGVPYY GGWGWSPFSFFAP PSVAVGIGGGFD+L LFIFLG+VAA VRRF G R +DDDDY
Subjt:  FRSAAPRSSSPRINNNSRTNIYINPRVAPPLVGGY--GYGVPYYGGGWGWSPFSFFAPTPSVAVGIGGGFDVLVLFIFLGTVAAFVRRFLGGRGEDDDDY

A0A6J1FDE3 uncharacterized protein LOC111444353

1.7e-100

100

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Query:  MSLASSQLSFLSTTLSFSSAPTPRRSNNILHSFHPIIASKLPPPADDPNGLERGNENRLAKLAIVTLAAGVLSLGSVHDASAAKTGGRVGGQAFRSAAPR
        MSLASSQLSFLSTTLSFSSAPTPRRSNNILHSFHPIIASKLPPPADDPNGLERGNENRLAKLAIVTLAAGVLSLGSVHDASAAKTGGRVGGQAFRSAAPR
Subjt:  MSLASSQLSFLSTTLSFSSAPTPRRSNNILHSFHPIIASKLPPPADDPNGLERGNENRLAKLAIVTLAAGVLSLGSVHDASAAKTGGRVGGQAFRSAAPR

Query:  SSSPRINNNSRTNIYINPRVAPPLVGGYGYGVPYYGGGWGWSPFSFFAPTPSVAVGIGGGFDVLVLFIFLGTVAAFVRRFLGGRGEDDDDY
        SSSPRINNNSRTNIYINPRVAPPLVGGYGYGVPYYGGGWGWSPFSFFAPTPSVAVGIGGGFDVLVLFIFLGTVAAFVRRFLGGRGEDDDDY
Subjt:  SSSPRINNNSRTNIYINPRVAPPLVGGYGYGVPYYGGGWGWSPFSFFAPTPSVAVGIGGGFDVLVLFIFLGTVAAFVRRFLGGRGEDDDDY

A0A6J1I348 uncharacterized protein LOC111468585

1.2e-98

98.43

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Query:  MSLASSQLSFLSTTLSFSSAPTPRRSNNILHSFHPIIASKLPPPADDPNGLERGNENRLAKLAIVTLAAGVLSLGSVHDASAAKTGGRVGGQAFRSAAPR
        MSLASSQLSFLSTTLSFSSAPTPRRSNNILHSFHPIIASKLPPPAD+PNGLERGNENRLAKLAIVTLAAGVL+LGSVHDASAAKTGGRVGGQAFRSAAPR
Subjt:  MSLASSQLSFLSTTLSFSSAPTPRRSNNILHSFHPIIASKLPPPADDPNGLERGNENRLAKLAIVTLAAGVLSLGSVHDASAAKTGGRVGGQAFRSAAPR

Query:  SSSPRINNNSRTNIYINPRVAPPLVGGYGYGVPYYGGGWGWSPFSFFAPTPSVAVGIGGGFDVLVLFIFLGTVAAFVRRFLGGRGEDDDDY
        SSSPRINNNSRTNIYINPRVAPPLVGGYGYGVPYYGGGWGWSPFSFFAPTPSVAVGIGGGFDVLVLFIFLGTVAAFVRRFLGGR EDDDDY
Subjt:  SSSPRINNNSRTNIYINPRVAPPLVGGYGYGVPYYGGGWGWSPFSFFAPTPSVAVGIGGGFDVLVLFIFLGTVAAFVRRFLGGRGEDDDDY

SwissProt top hits	e value	%identity	Alignment
No hits found

Arabidopsis top hits

e value

%identity

Alignment

AT1G54520.1 unknown protein

1.7e-04

33.08

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Query:  LAKLAIVTLAAGVLSLGSVHDASAAKTGGRVGGQAFRSAAPRSSSPRINNNSRTNIYINPRVAPPLVGGYGYGVPYYGGGWGWSPFSFFAPTPSVAVGIG
        L K AI  +  G+L     + A AA +GGR+GG +F      SS  R +++S +  Y  PR + P         PYYG     SPF      P+V  G  
Subjt:  LAKLAIVTLAAGVLSLGSVHDASAAKTGGRVGGQAFRSAAPRSSSPRINNNSRTNIYINPRVAPPLVGGYGYGVPYYGGGWGWSPFSFFAPTPSVAVGIG

Query:  GGFDVLVLFIFLGTVAAFVRRFLGGRGEDD
        GGF    L +        V  FL  R +DD
Subjt:  GGFDVLVLFIFLGTVAAFVRRFLGGRGEDD

AT5G57345.1 unknown protein

1.6e-50

57.67

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Query:  SLASSQLSFLSTTLSFSSAPTPRRSNNILHSFHPIIASKLPPPADDPNGLERGNENRLAKLAIVTLAAGVLSLGSVHDASAAKTGGRVGGQAFRSAAPRS
        ++ASS+ SFLS   SF  +  P+ + N+     P          DD     R NEN+LAKLAI TLA GVL+LGSV DA AAK+GGR+GGQAFRS+APR 
Subjt:  SLASSQLSFLSTTLSFSSAPTPRRSNNILHSFHPIIASKLPPPADDPNGLERGNENRLAKLAIVTLAAGVLSLGSVHDASAAKTGGRVGGQAFRSAAPRS

Query:  SSPRINNNSRTNIYINPRVAPPLVGGYGYGVPYYGGGWGWSPFSFFAPTPSVAVGIGGGFDVLVLFIFLGTVAAFVRRFLGGRGEDDDD
          PRINN SRTNIY+NP+VAPPL+GGYGYG     GG+GWSPFSFFAP P+VAVG+GGGFD+L+LF+F G  +A  R F   R ++DD+
Subjt:  SSPRINNNSRTNIYINPRVAPPLVGGYGYGVPYYGGGWGWSPFSFFAPTPSVAVGIGGGFDVLVLFIFLGTVAAFVRRFLGGRGEDDDD

Sequences

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CDS sequence

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ATGTCGTTGGCCTCATCGCAGCTCAGCTTTCTCTCCACCACCCTCTCCTTCTCCTCCGCCCCCACCCCTCGCCGGTCCAACAACATCCTCCATTCTTTCCATCCTATAAT
CGCCTCTAAACTTCCTCCCCCCGCCGATGATCCTAATGGATTAGAGAGGGGAAATGAGAATCGACTAGCGAAGCTTGCGATTGTTACTCTGGCGGCTGGGGTTTTGTCAT
TGGGATCGGTTCATGATGCGTCGGCCGCTAAGACCGGTGGCCGAGTTGGCGGCCAGGCGTTCCGATCGGCGGCTCCCCGGTCTTCATCGCCGAGAATCAATAACAATTCC
AGGACAAATATCTACATAAACCCGAGAGTAGCGCCTCCTCTAGTAGGTGGGTATGGTTATGGTGTGCCATACTATGGAGGAGGATGGGGATGGTCACCATTTTCATTCTT
TGCACCAACCCCAAGTGTAGCTGTAGGCATTGGAGGAGGTTTTGATGTTCTTGTGCTCTTCATTTTTCTTGGAACTGTTGCAGCTTTTGTGAGAAGGTTCCTTGGAGGAA
GAGGAGAAGATGATGATGATTATTAA

mRNA sequence

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AATCTTGAAACTCCCAATGAGAAGCTGAAATCCTTCCACGTGGAAACCTCACAGTCACGAAAATCCCATTCTCAAATCCCAAAACCCCTCACCAACACAAACAAATCCCT
TCTTCTCCGGTCCTCCATTGAAGTACACTCCAATCTTCCCCTCACCATGTCGTTGGCCTCATCGCAGCTCAGCTTTCTCTCCACCACCCTCTCCTTCTCCTCCGCCCCCA
CCCCTCGCCGGTCCAACAACATCCTCCATTCTTTCCATCCTATAATCGCCTCTAAACTTCCTCCCCCCGCCGATGATCCTAATGGATTAGAGAGGGGAAATGAGAATCGA
CTAGCGAAGCTTGCGATTGTTACTCTGGCGGCTGGGGTTTTGTCATTGGGATCGGTTCATGATGCGTCGGCCGCTAAGACCGGTGGCCGAGTTGGCGGCCAGGCGTTCCG
ATCGGCGGCTCCCCGGTCTTCATCGCCGAGAATCAATAACAATTCCAGGACAAATATCTACATAAACCCGAGAGTAGCGCCTCCTCTAGTAGGTGGGTATGGTTATGGTG
TGCCATACTATGGAGGAGGATGGGGATGGTCACCATTTTCATTCTTTGCACCAACCCCAAGTGTAGCTGTAGGCATTGGAGGAGGTTTTGATGTTCTTGTGCTCTTCATT
TTTCTTGGAACTGTTGCAGCTTTTGTGAGAAGGTTCCTTGGAGGAAGAGGAGAAGATGATGATGATTATTAATGCTGCTAAAGATCTTATGAACTTTAGGTTTTTGGTGG
GGAGATATACTTTTTGTTGGTAAAAATTGTCACATAATGTATTTTTATGTGGACAAACTTTTTGTATTCACAAAGCATATAATGTATAAAATGTATAGTTATTTATATGA
CTTTTTTTTTTTTTTTGGTACTGAAATAATATGG

Protein sequence

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MSLASSQLSFLSTTLSFSSAPTPRRSNNILHSFHPIIASKLPPPADDPNGLERGNENRLAKLAIVTLAAGVLSLGSVHDASAAKTGGRVGGQAFRSAAPRSSSPRINNNS
RTNIYINPRVAPPLVGGYGYGVPYYGGGWGWSPFSFFAPTPSVAVGIGGGFDVLVLFIFLGTVAAFVRRFLGGRGEDDDDY

CmoCh12G009010 (gene) of Cucurbita moschata (Rifu) v1 genome