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CmoCh12G009060 (gene) of Cucurbita moschata (Rifu) v1 genome

Gene IDCmoCh12G009060
OrganismCucurbita moschata Rifu (Cucurbita moschata (Rifu) v1)
Description60S acidic ribosomal protein P3
Genome locationCmo_Chr12:8320700..8326529
RNA-Seq ExpressionCmoCh12G009060
SyntenyCmoCh12G009060
Gene Ontology termsGO:0006414 - translational elongation (biological process)
GO:0022626 - cytosolic ribosome (cellular component)
GO:0003735 - structural constituent of ribosome (molecular function)
InterPro domainsIPR044252 - 60S acidic ribosomal protein P3-like


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_004148320.1 60S acidic ribosomal protein P3-2 [Cucumis sativus]2.7e-4183.47Show/hide
Query:  MGVFTFVCRKSGGEWTANQYSGDLEGSAASTYDLQRKLVASALSVDSSGCVQSSFSYVSPSSAVFQVIIGGASGGGIISGGAAAAAPAGGAAP-AAEAPA
        MGVFTFVCR SGG+WTANQYSGDLEGSA STY+LQRKLV SALSVDSSG VQSSFS+++PSSAVFQVI+GG SGGG  +GG AAAAPAGGAAP AAEAPA
Subjt:  MGVFTFVCRKSGGEWTANQYSGDLEGSAASTYDLQRKLVASALSVDSSGCVQSSFSYVSPSSAVFQVIIGGASGGGIISGGAAAAAPAGGAAP-AAEAPA

Query:  PAKEEVKEESDDDDLGFSLFD
          KEEVKEESDD+DLG SLFD
Subjt:  PAKEEVKEESDDDDLGFSLFD

XP_022929782.1 60S acidic ribosomal protein P3-2-like [Cucurbita moschata]4.6e-4183.47Show/hide
Query:  MGVFTFVCRKSGGEWTANQYSGDLEGSAASTYDLQRKLVASALSVDSSGCVQSSFSYVSPSSAVFQVIIGGASGGGIISGGAAAAAPAGGAAP-AAEAPA
        MGVFTF+CR SGG+WTANQYSGDLEGSA STYDLQR LV + LSVD SG VQSSFSYV+P+SAVFQVIIGG+SGGG I GG AAAAPAGG AP AAEAPA
Subjt:  MGVFTFVCRKSGGEWTANQYSGDLEGSAASTYDLQRKLVASALSVDSSGCVQSSFSYVSPSSAVFQVIIGGASGGGIISGGAAAAAPAGGAAP-AAEAPA

Query:  PAKEEVKEESDDDDLGFSLFD
          KEEVKEESDDDDLGFSLFD
Subjt:  PAKEEVKEESDDDDLGFSLFD

XP_022937950.1 60S acidic ribosomal protein P3 [Cucurbita moschata]5.3e-53100Show/hide
Query:  MGVFTFVCRKSGGEWTANQYSGDLEGSAASTYDLQRKLVASALSVDSSGCVQSSFSYVSPSSAVFQVIIGGASGGGIISGGAAAAAPAGGAAPAAEAPAP
        MGVFTFVCRKSGGEWTANQYSGDLEGSAASTYDLQRKLVASALSVDSSGCVQSSFSYVSPSSAVFQVIIGGASGGGIISGGAAAAAPAGGAAPAAEAPAP
Subjt:  MGVFTFVCRKSGGEWTANQYSGDLEGSAASTYDLQRKLVASALSVDSSGCVQSSFSYVSPSSAVFQVIIGGASGGGIISGGAAAAAPAGGAAPAAEAPAP

Query:  AKEEVKEESDDDDLGFSLFD
        AKEEVKEESDDDDLGFSLFD
Subjt:  AKEEVKEESDDDDLGFSLFD

XP_022969611.1 60S acidic ribosomal protein P3-like [Cucurbita maxima]4.6e-4996.67Show/hide
Query:  MGVFTFVCRKSGGEWTANQYSGDLEGSAASTYDLQRKLVASALSVDSSGCVQSSFSYVSPSSAVFQVIIGGASGGGIISGGAAAAAPAGGAAPAAEAPAP
        MGVFTFVCRKSGGEWTANQYSG LEGSAASTYDLQRKLVASALSVDSSG VQSSFSYVSPSSAVFQVIIGGASGGGIISGG AAAAPAGGAAPAAEAPA 
Subjt:  MGVFTFVCRKSGGEWTANQYSGDLEGSAASTYDLQRKLVASALSVDSSGCVQSSFSYVSPSSAVFQVIIGGASGGGIISGGAAAAAPAGGAAPAAEAPAP

Query:  AKEEVKEESDDDDLGFSLFD
        AKEEVKEESDDDDLGFSLFD
Subjt:  AKEEVKEESDDDDLGFSLFD

XP_023537756.1 60S acidic ribosomal protein P3 [Cucurbita pepo subsp. pepo]1.3e-5199.17Show/hide
Query:  MGVFTFVCRKSGGEWTANQYSGDLEGSAASTYDLQRKLVASALSVDSSGCVQSSFSYVSPSSAVFQVIIGGASGGGIISGGAAAAAPAGGAAPAAEAPAP
        MGVFTFVCRKSGGEWTANQYSGDLEGSAASTYDLQRKLVASALSVDSSG VQSSFSYVSPSSAVFQVIIGGASGGGIISGGAAAAAPAGGAAPAAEAPAP
Subjt:  MGVFTFVCRKSGGEWTANQYSGDLEGSAASTYDLQRKLVASALSVDSSGCVQSSFSYVSPSSAVFQVIIGGASGGGIISGGAAAAAPAGGAAPAAEAPAP

Query:  AKEEVKEESDDDDLGFSLFD
        AKEEVKEESDDDDLGFSLFD
Subjt:  AKEEVKEESDDDDLGFSLFD

TrEMBL top hitse value%identityAlignment
A0A0A0LJB2 Uncharacterized protein1.3e-4183.47Show/hide
Query:  MGVFTFVCRKSGGEWTANQYSGDLEGSAASTYDLQRKLVASALSVDSSGCVQSSFSYVSPSSAVFQVIIGGASGGGIISGGAAAAAPAGGAAP-AAEAPA
        MGVFTFVCR SGG+WTANQYSGDLEGSA STY+LQRKLV SALSVDSSG VQSSFS+++PSSAVFQVI+GG SGGG  +GG AAAAPAGGAAP AAEAPA
Subjt:  MGVFTFVCRKSGGEWTANQYSGDLEGSAASTYDLQRKLVASALSVDSSGCVQSSFSYVSPSSAVFQVIIGGASGGGIISGGAAAAAPAGGAAP-AAEAPA

Query:  PAKEEVKEESDDDDLGFSLFD
          KEEVKEESDD+DLG SLFD
Subjt:  PAKEEVKEESDDDDLGFSLFD

A0A6J1ENN1 60S acidic ribosomal protein P3-2-like2.2e-4183.47Show/hide
Query:  MGVFTFVCRKSGGEWTANQYSGDLEGSAASTYDLQRKLVASALSVDSSGCVQSSFSYVSPSSAVFQVIIGGASGGGIISGGAAAAAPAGGAAP-AAEAPA
        MGVFTF+CR SGG+WTANQYSGDLEGSA STYDLQR LV + LSVD SG VQSSFSYV+P+SAVFQVIIGG+SGGG I GG AAAAPAGG AP AAEAPA
Subjt:  MGVFTFVCRKSGGEWTANQYSGDLEGSAASTYDLQRKLVASALSVDSSGCVQSSFSYVSPSSAVFQVIIGGASGGGIISGGAAAAAPAGGAAP-AAEAPA

Query:  PAKEEVKEESDDDDLGFSLFD
          KEEVKEESDDDDLGFSLFD
Subjt:  PAKEEVKEESDDDDLGFSLFD

A0A6J1FI91 60S acidic ribosomal protein P32.6e-53100Show/hide
Query:  MGVFTFVCRKSGGEWTANQYSGDLEGSAASTYDLQRKLVASALSVDSSGCVQSSFSYVSPSSAVFQVIIGGASGGGIISGGAAAAAPAGGAAPAAEAPAP
        MGVFTFVCRKSGGEWTANQYSGDLEGSAASTYDLQRKLVASALSVDSSGCVQSSFSYVSPSSAVFQVIIGGASGGGIISGGAAAAAPAGGAAPAAEAPAP
Subjt:  MGVFTFVCRKSGGEWTANQYSGDLEGSAASTYDLQRKLVASALSVDSSGCVQSSFSYVSPSSAVFQVIIGGASGGGIISGGAAAAAPAGGAAPAAEAPAP

Query:  AKEEVKEESDDDDLGFSLFD
        AKEEVKEESDDDDLGFSLFD
Subjt:  AKEEVKEESDDDDLGFSLFD

A0A6J1HYA3 60S acidic ribosomal protein P3-like2.2e-4996.67Show/hide
Query:  MGVFTFVCRKSGGEWTANQYSGDLEGSAASTYDLQRKLVASALSVDSSGCVQSSFSYVSPSSAVFQVIIGGASGGGIISGGAAAAAPAGGAAPAAEAPAP
        MGVFTFVCRKSGGEWTANQYSG LEGSAASTYDLQRKLVASALSVDSSG VQSSFSYVSPSSAVFQVIIGGASGGGIISGG AAAAPAGGAAPAAEAPA 
Subjt:  MGVFTFVCRKSGGEWTANQYSGDLEGSAASTYDLQRKLVASALSVDSSGCVQSSFSYVSPSSAVFQVIIGGASGGGIISGGAAAAAPAGGAAPAAEAPAP

Query:  AKEEVKEESDDDDLGFSLFD
        AKEEVKEESDDDDLGFSLFD
Subjt:  AKEEVKEESDDDDLGFSLFD

A0A6J1KB28 60S acidic ribosomal protein P3-2-like2.2e-4183.47Show/hide
Query:  MGVFTFVCRKSGGEWTANQYSGDLEGSAASTYDLQRKLVASALSVDSSGCVQSSFSYVSPSSAVFQVIIGGASGGGIISGGAAAAAPAGGAAP-AAEAPA
        MGVFTF+CR SGG+WTANQYSGDLEGSA STYDLQR LV + LSVD SG VQSSFSYV+P+SAVFQVIIGG+SGGG I GG AAAAPAGG AP AAEAPA
Subjt:  MGVFTFVCRKSGGEWTANQYSGDLEGSAASTYDLQRKLVASALSVDSSGCVQSSFSYVSPSSAVFQVIIGGASGGGIISGGAAAAAPAGGAAP-AAEAPA

Query:  PAKEEVKEESDDDDLGFSLFD
          KEEVKEESDDDDLGFSLFD
Subjt:  PAKEEVKEESDDDDLGFSLFD

SwissProt top hitse value%identityAlignment
O24413 60S acidic ribosomal protein P36.1e-2861.16Show/hide
Query:  MGVFTFVCRKSGGEWTANQYSGDLEGSAASTYDLQRKLVASALSVDSSGCVQSSFSYVSPSSAVFQVIIGGASGGG-IISGGAAAAAPAGGAAPAAEAPA
        MGV+TFVCR +GGEWTA Q+SG++E SAA+ Y+LQR+LVA+A + DS   VQSSFS V+PSSAVFQVI+G   GG  ++SGG    A A G A AAEAP 
Subjt:  MGVFTFVCRKSGGEWTANQYSGDLEGSAASTYDLQRKLVASALSVDSSGCVQSSFSYVSPSSAVFQVIIGGASGGG-IISGGAAAAAPAGGAAPAAEAPA

Query:  PAKEEVKEESDDDDLGFSLFD
          K+E ++E  DDD+GFSLFD
Subjt:  PAKEEVKEESDDDDLGFSLFD

P56724 60S acidic ribosomal protein P38.5e-3066.67Show/hide
Query:  MGVFTFVCRKSGGEWTANQYSGDLEGSAASTYDLQRKLVASALSVDSSGCVQSSFSYVSPSSAVFQVIIGGASGGGIISGGAAAAAPAGGAAPAAEAPAP
        MGV+TFVCR SG EWTA Q  G+LE SAA+ Y+LQR+LVA+A + DS+  VQSSFS VSPSSAVFQVIIG   GG  I GGAAA A +GGAA  A     
Subjt:  MGVFTFVCRKSGGEWTANQYSGDLEGSAASTYDLQRKLVASALSVDSSGCVQSSFSYVSPSSAVFQVIIGGASGGGIISGGAAAAAPAGGAAPAAEAPAP

Query:  AKEEVKEESDDDDLGFSLFD
         KEE KEES +DDLGFSLFD
Subjt:  AKEEVKEESDDDDLGFSLFD

Q9LVC9 60S acidic ribosomal protein P3-25.5e-2961.34Show/hide
Query:  MGVFTFVCRKSGGEWTANQYSGDLEGSAASTYDLQRKLVASALSVDSSGCVQSSFSYVSPSSAVFQVIIGGASGGGIISGGAAAAAPAGGAAPAAEAPAP
        MGVF+FVC+  GGEWTA Q+ GDLE SA+STYDLQRKLV +ALS DSSG VQSSFS VSP+SAVF V+IGG  GGG  +GG AAA   GG   AA     
Subjt:  MGVFTFVCRKSGGEWTANQYSGDLEGSAASTYDLQRKLVASALSVDSSGCVQSSFSYVSPSSAVFQVIIGGASGGGIISGGAAAAAPAGGAAPAAEAPAP

Query:  AKEEVKEESDDDDLGFSLF
         K++ + E ++ D GF LF
Subjt:  AKEEVKEESDDDDLGFSLF

Q9SVZ6 60S acidic ribosomal protein P3-15.2e-2761.98Show/hide
Query:  MGVFTFVCRKSGGEWTANQYSGDLEGSAASTYDLQRKLVASALSVDSSGCVQSSFSYVSPSSAVFQVIIGGASGGGIISGGAAAAAPAGGAAPAAEAPAP
        MGVFTFVC+  GG W+A Q+ G+LE SA+STY+LQRKLV  +LS DSSG VQSSFS VSP+SAVFQVI+GG  GGG  +GGAA++   GGA  AA AP  
Subjt:  MGVFTFVCRKSGGEWTANQYSGDLEGSAASTYDLQRKLVASALSVDSSGCVQSSFSYVSPSSAVFQVIIGGASGGGIISGGAAAAAPAGGAAPAAEAPAP

Query:  AKEEVKEESDDD--DLGFSLF
          E+ KEES+++  D GF LF
Subjt:  AKEEVKEESDDD--DLGFSLF

Arabidopsis top hitse value%identityAlignment
AT4G25890.1 60S acidic ribosomal protein family3.7e-2861.98Show/hide
Query:  MGVFTFVCRKSGGEWTANQYSGDLEGSAASTYDLQRKLVASALSVDSSGCVQSSFSYVSPSSAVFQVIIGGASGGGIISGGAAAAAPAGGAAPAAEAPAP
        MGVFTFVC+  GG W+A Q+ G+LE SA+STY+LQRKLV  +LS DSSG VQSSFS VSP+SAVFQVI+GG  GGG  +GGAA++   GGA  AA AP  
Subjt:  MGVFTFVCRKSGGEWTANQYSGDLEGSAASTYDLQRKLVASALSVDSSGCVQSSFSYVSPSSAVFQVIIGGASGGGIISGGAAAAAPAGGAAPAAEAPAP

Query:  AKEEVKEESDDD--DLGFSLF
          E+ KEES+++  D GF LF
Subjt:  AKEEVKEESDDD--DLGFSLF

AT5G57290.1 60S acidic ribosomal protein family3.9e-3061.34Show/hide
Query:  MGVFTFVCRKSGGEWTANQYSGDLEGSAASTYDLQRKLVASALSVDSSGCVQSSFSYVSPSSAVFQVIIGGASGGGIISGGAAAAAPAGGAAPAAEAPAP
        MGVF+FVC+  GGEWTA Q+ GDLE SA+STYDLQRKLV +ALS DSSG VQSSFS VSP+SAVF V+IGG  GGG  +GG AAA   GG   AA     
Subjt:  MGVFTFVCRKSGGEWTANQYSGDLEGSAASTYDLQRKLVASALSVDSSGCVQSSFSYVSPSSAVFQVIIGGASGGGIISGGAAAAAPAGGAAPAAEAPAP

Query:  AKEEVKEESDDDDLGFSLF
         K++ + E ++ D GF LF
Subjt:  AKEEVKEESDDDDLGFSLF

AT5G57290.2 60S acidic ribosomal protein family1.0e-2572.84Show/hide
Query:  MGVFTFVCRKSGGEWTANQYSGDLEGSAASTYDLQRKLVASALSVDSSGCVQSSFSYVSPSSAVFQVIIGGASGGGIISGG
        MGVF+FVC+  GGEWTA Q+ GDLE SA+STYDLQRKLV +ALS DSSG VQSSFS VSP+SAVF V+IGG  GGG  +GG
Subjt:  MGVFTFVCRKSGGEWTANQYSGDLEGSAASTYDLQRKLVASALSVDSSGCVQSSFSYVSPSSAVFQVIIGGASGGGIISGG

AT5G57290.3 60S acidic ribosomal protein family7.4e-2961.34Show/hide
Query:  MGVFTFVCRKSGGEWTANQYSGDLEGSAASTYDLQRKLVASALSVDSSGCVQSSFSYVSPSSAVFQVIIGGASGGGIISGGAAAAAPAGGAAPAAEAPAP
        MGVF+FVC+  GGEWTA Q+ GDLE SA+STYDLQRKLV +ALS DSSG VQSSFS VSP+SAVF V+IGG  GGG  +GG AAA   GG   AA     
Subjt:  MGVFTFVCRKSGGEWTANQYSGDLEGSAASTYDLQRKLVASALSVDSSGCVQSSFSYVSPSSAVFQVIIGGASGGGIISGGAAAAAPAGGAAPAAEAPAP

Query:  AKEEVKEESDDDDLGFSLF
         K++ + E ++ D GF LF
Subjt:  AKEEVKEESDDDDLGFSLF


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGAAAATCCAAGCAGAGAAGCACCCAGATCCAGTCCCAGGGTTAAAAGGGCACGGAAGGCACGAAAGGCACGAAAGGAGGAACGGCTTCCTCTCCTCAAAATAAAAAC
CAAACACCAATACGGAGAACGGCCGCTAGTCCTACGCTCTATCTTTCTTCTTCGCAATTTGCTTCGATCAAAATTCACGTTCGAAGATCAAACAATGGGAGTTTTCACCT
TCGTTTGTCGGAAATCCGGTGGCGAGTGGACCGCCAATCAGTACTCAGGCGACCTTGAAGGTTCCGCCGCTTCAACCTATGATCTCCAGAGGAAGCTCGTTGCGTCTGCT
CTCTCTGTCGATTCCTCCGGTTGCGTTCAGTCCTCATTCTCTTACGTTTCTCCCAGCTCGGCCGTTTTTCAGGTGATCATTGGTGGTGCTAGTGGCGGTGGTATCATTAG
TGGTGGAGCAGCGGCAGCCGCCCCTGCTGGAGGAGCTGCACCAGCTGCAGAAGCCCCAGCTCCAGCGAAGGAGGAGGTGAAGGAAGAGAGTGATGATGATGACCTTGGCT
TTTCACTTTTTGATTAA
mRNA sequenceShow/hide mRNA sequence
ATGGAAAATCCAAGCAGAGAAGCACCCAGATCCAGTCCCAGGGTTAAAAGGGCACGGAAGGCACGAAAGGCACGAAAGGAGGAACGGCTTCCTCTCCTCAAAATAAAAAC
CAAACACCAATACGGAGAACGGCCGCTAGTCCTACGCTCTATCTTTCTTCTTCGCAATTTGCTTCGATCAAAATTCACGTTCGAAGATCAAACAATGGGAGTTTTCACCT
TCGTTTGTCGGAAATCCGGTGGCGAGTGGACCGCCAATCAGTACTCAGGCGACCTTGAAGGTTCCGCCGCTTCAACCTATGATCTCCAGAGGAAGCTCGTTGCGTCTGCT
CTCTCTGTCGATTCCTCCGGTTGCGTTCAGTCCTCATTCTCTTACGTTTCTCCCAGCTCGGCCGTTTTTCAGGTGATCATTGGTGGTGCTAGTGGCGGTGGTATCATTAG
TGGTGGAGCAGCGGCAGCCGCCCCTGCTGGAGGAGCTGCACCAGCTGCAGAAGCCCCAGCTCCAGCGAAGGAGGAGGTGAAGGAAGAGAGTGATGATGATGACCTTGGCT
TTTCACTTTTTGATTAATTGGTATAATTACTTGTTATTGTTTATCAATCTCATAATTTTTAGCTCTAAAATCTTCTCTTCAGGATATTATGTCTATGCACTTACTTGAAT
TTGCCAGTTCATTAGCTGTTCTTGTTAAGGACATGGAATTTTGCTACTGATCTTTGTTAAATGGTTGAGAATTAGATGTGTTCTTTCTGATTACCTTCCCTTCGATTTAT
TTTTCGGTAAGTAGAGATGTCTATATAGCCCGTGGAGTCTGAATTTTGTGAGTACCTATTATCATACTTCACTTAACCAAGATTGTGGGCTAACCCGCCTTATAACCATC
CTACCCGGTTCCTTGGCC
Protein sequenceShow/hide protein sequence
MENPSREAPRSSPRVKRARKARKARKEERLPLLKIKTKHQYGERPLVLRSIFLLRNLLRSKFTFEDQTMGVFTFVCRKSGGEWTANQYSGDLEGSAASTYDLQRKLVASA
LSVDSSGCVQSSFSYVSPSSAVFQVIIGGASGGGIISGGAAAAAPAGGAAPAAEAPAPAKEEVKEESDDDDLGFSLFD