; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

CmoCh12G009800 (gene) of Cucurbita moschata (Rifu) v1 genome

Gene IDCmoCh12G009800
OrganismCucurbita moschata Rifu (Cucurbita moschata (Rifu) v1)
DescriptionINO80 complex subunit C
Genome locationCmo_Chr12:9145786..9152900
RNA-Seq ExpressionCmoCh12G009800
SyntenyCmoCh12G009800
Gene Ontology termsGO:0006338 - chromatin remodeling (biological process)
GO:0006468 - protein phosphorylation (biological process)
GO:0031011 - Ino80 complex (cellular component)
GO:0004672 - protein kinase activity (molecular function)
GO:0005524 - ATP binding (molecular function)
InterPro domainsIPR013272 - Vps72/YL1, C-terminal
IPR029525 - INO80 complex, subunit Ies6


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_008441777.1 PREDICTED: INO80 complex subunit C isoform X1 [Cucumis melo]1.7e-6396.77Show/hide
Query:  MEPEVIEAELVLPTHLNFKRIQMYEKYPKGQSRGRHWKHLKQILQAENYHNYSSDEPNYVNIESPPSMHPCKKICDITGYEAPYYDPRTTLRYANADIFK
        MEPEVIEAELVLP HLNFKRIQMYEKYPKGQSRGRHWKHLKQILQAENY+NYS DEPNYVNIESPPSMHPCK+ICDITGYEAPYYDPRTTLRYANADIFK
Subjt:  MEPEVIEAELVLPTHLNFKRIQMYEKYPKGQSRGRHWKHLKQILQAENYHNYSSDEPNYVNIESPPSMHPCKKICDITGYEAPYYDPRTTLRYANADIFK

Query:  VIRSLPNEYVQRYLAMRNAAVVLR
        VIRSLPNEYVQRYLAMRNAAVVLR
Subjt:  VIRSLPNEYVQRYLAMRNAAVVLR

XP_022144563.1 INO80 complex subunit C isoform X1 [Momordica charantia]1.5e-6496.77Show/hide
Query:  MEPEVIEAELVLPTHLNFKRIQMYEKYPKGQSRGRHWKHLKQILQAENYHNYSSDEPNYVNIESPPSMHPCKKICDITGYEAPYYDPRTTLRYANADIFK
        MEPEVIEAELVLPTHLNFKRIQMYEKYPKGQSRGRHWKHLKQILQAENYHN+S DEPNYVNIESPPSMHPCKKICDITGYEAPYYDPRTTLRYANAD+FK
Subjt:  MEPEVIEAELVLPTHLNFKRIQMYEKYPKGQSRGRHWKHLKQILQAENYHNYSSDEPNYVNIESPPSMHPCKKICDITGYEAPYYDPRTTLRYANADIFK

Query:  VIRSLPNEYVQRYLAMRNAAVVLR
        VIRSLPNEYVQRYLAMRNAAV+LR
Subjt:  VIRSLPNEYVQRYLAMRNAAVVLR

XP_022937916.1 INO80 complex subunit C isoform X1 [Cucurbita moschata]6.1e-66100Show/hide
Query:  MEPEVIEAELVLPTHLNFKRIQMYEKYPKGQSRGRHWKHLKQILQAENYHNYSSDEPNYVNIESPPSMHPCKKICDITGYEAPYYDPRTTLRYANADIFK
        MEPEVIEAELVLPTHLNFKRIQMYEKYPKGQSRGRHWKHLKQILQAENYHNYSSDEPNYVNIESPPSMHPCKKICDITGYEAPYYDPRTTLRYANADIFK
Subjt:  MEPEVIEAELVLPTHLNFKRIQMYEKYPKGQSRGRHWKHLKQILQAENYHNYSSDEPNYVNIESPPSMHPCKKICDITGYEAPYYDPRTTLRYANADIFK

Query:  VIRSLPNEYVQRYLAMRNAAVVLR
        VIRSLPNEYVQRYLAMRNAAVVLR
Subjt:  VIRSLPNEYVQRYLAMRNAAVVLR

XP_031736376.1 INO80 complex subunit C isoform X1 [Cucumis sativus]2.2e-6396.77Show/hide
Query:  MEPEVIEAELVLPTHLNFKRIQMYEKYPKGQSRGRHWKHLKQILQAENYHNYSSDEPNYVNIESPPSMHPCKKICDITGYEAPYYDPRTTLRYANADIFK
        ME EVIEAELVLP HLNFKRIQMYEKYPKGQSRGRHWKHLKQILQAENYHNYS DEPNYVNIESPPSMHPCK+ICDITGYEAPYYDPRTTLRYANADIFK
Subjt:  MEPEVIEAELVLPTHLNFKRIQMYEKYPKGQSRGRHWKHLKQILQAENYHNYSSDEPNYVNIESPPSMHPCKKICDITGYEAPYYDPRTTLRYANADIFK

Query:  VIRSLPNEYVQRYLAMRNAAVVLR
        VIRSLPNEYVQRYLAMRNAAVVLR
Subjt:  VIRSLPNEYVQRYLAMRNAAVVLR

XP_038889510.1 INO80 complex subunit C isoform X1 [Benincasa hispida]2.6e-6497.58Show/hide
Query:  MEPEVIEAELVLPTHLNFKRIQMYEKYPKGQSRGRHWKHLKQILQAENYHNYSSDEPNYVNIESPPSMHPCKKICDITGYEAPYYDPRTTLRYANADIFK
        MEPEVIEAELVLP HLNFKRIQMYEKYPKGQSRGRHWKHLKQILQAENYHNYS DEPNYVNIESPPSMHPCK+ICDITGYEAPYYDPRTTLRYANADIFK
Subjt:  MEPEVIEAELVLPTHLNFKRIQMYEKYPKGQSRGRHWKHLKQILQAENYHNYSSDEPNYVNIESPPSMHPCKKICDITGYEAPYYDPRTTLRYANADIFK

Query:  VIRSLPNEYVQRYLAMRNAAVVLR
        VIRSLPNEYVQRYLAMRNAAVVLR
Subjt:  VIRSLPNEYVQRYLAMRNAAVVLR

TrEMBL top hitse value%identityAlignment
A0A0A0LJN6 YL1_C domain-containing protein1.1e-6396.77Show/hide
Query:  MEPEVIEAELVLPTHLNFKRIQMYEKYPKGQSRGRHWKHLKQILQAENYHNYSSDEPNYVNIESPPSMHPCKKICDITGYEAPYYDPRTTLRYANADIFK
        ME EVIEAELVLP HLNFKRIQMYEKYPKGQSRGRHWKHLKQILQAENYHNYS DEPNYVNIESPPSMHPCK+ICDITGYEAPYYDPRTTLRYANADIFK
Subjt:  MEPEVIEAELVLPTHLNFKRIQMYEKYPKGQSRGRHWKHLKQILQAENYHNYSSDEPNYVNIESPPSMHPCKKICDITGYEAPYYDPRTTLRYANADIFK

Query:  VIRSLPNEYVQRYLAMRNAAVVLR
        VIRSLPNEYVQRYLAMRNAAVVLR
Subjt:  VIRSLPNEYVQRYLAMRNAAVVLR

A0A1S3B479 INO80 complex subunit C isoform X18.1e-6496.77Show/hide
Query:  MEPEVIEAELVLPTHLNFKRIQMYEKYPKGQSRGRHWKHLKQILQAENYHNYSSDEPNYVNIESPPSMHPCKKICDITGYEAPYYDPRTTLRYANADIFK
        MEPEVIEAELVLP HLNFKRIQMYEKYPKGQSRGRHWKHLKQILQAENY+NYS DEPNYVNIESPPSMHPCK+ICDITGYEAPYYDPRTTLRYANADIFK
Subjt:  MEPEVIEAELVLPTHLNFKRIQMYEKYPKGQSRGRHWKHLKQILQAENYHNYSSDEPNYVNIESPPSMHPCKKICDITGYEAPYYDPRTTLRYANADIFK

Query:  VIRSLPNEYVQRYLAMRNAAVVLR
        VIRSLPNEYVQRYLAMRNAAVVLR
Subjt:  VIRSLPNEYVQRYLAMRNAAVVLR

A0A6J1CRZ9 INO80 complex subunit C isoform X17.3e-6596.77Show/hide
Query:  MEPEVIEAELVLPTHLNFKRIQMYEKYPKGQSRGRHWKHLKQILQAENYHNYSSDEPNYVNIESPPSMHPCKKICDITGYEAPYYDPRTTLRYANADIFK
        MEPEVIEAELVLPTHLNFKRIQMYEKYPKGQSRGRHWKHLKQILQAENYHN+S DEPNYVNIESPPSMHPCKKICDITGYEAPYYDPRTTLRYANAD+FK
Subjt:  MEPEVIEAELVLPTHLNFKRIQMYEKYPKGQSRGRHWKHLKQILQAENYHNYSSDEPNYVNIESPPSMHPCKKICDITGYEAPYYDPRTTLRYANADIFK

Query:  VIRSLPNEYVQRYLAMRNAAVVLR
        VIRSLPNEYVQRYLAMRNAAV+LR
Subjt:  VIRSLPNEYVQRYLAMRNAAVVLR

A0A6J1FBP9 INO80 complex subunit C isoform X13.0e-66100Show/hide
Query:  MEPEVIEAELVLPTHLNFKRIQMYEKYPKGQSRGRHWKHLKQILQAENYHNYSSDEPNYVNIESPPSMHPCKKICDITGYEAPYYDPRTTLRYANADIFK
        MEPEVIEAELVLPTHLNFKRIQMYEKYPKGQSRGRHWKHLKQILQAENYHNYSSDEPNYVNIESPPSMHPCKKICDITGYEAPYYDPRTTLRYANADIFK
Subjt:  MEPEVIEAELVLPTHLNFKRIQMYEKYPKGQSRGRHWKHLKQILQAENYHNYSSDEPNYVNIESPPSMHPCKKICDITGYEAPYYDPRTTLRYANADIFK

Query:  VIRSLPNEYVQRYLAMRNAAVVLR
        VIRSLPNEYVQRYLAMRNAAVVLR
Subjt:  VIRSLPNEYVQRYLAMRNAAVVLR

A0A6J1HLV4 INO80 complex subunit C isoform X13.0e-66100Show/hide
Query:  MEPEVIEAELVLPTHLNFKRIQMYEKYPKGQSRGRHWKHLKQILQAENYHNYSSDEPNYVNIESPPSMHPCKKICDITGYEAPYYDPRTTLRYANADIFK
        MEPEVIEAELVLPTHLNFKRIQMYEKYPKGQSRGRHWKHLKQILQAENYHNYSSDEPNYVNIESPPSMHPCKKICDITGYEAPYYDPRTTLRYANADIFK
Subjt:  MEPEVIEAELVLPTHLNFKRIQMYEKYPKGQSRGRHWKHLKQILQAENYHNYSSDEPNYVNIESPPSMHPCKKICDITGYEAPYYDPRTTLRYANADIFK

Query:  VIRSLPNEYVQRYLAMRNAAVVLR
        VIRSLPNEYVQRYLAMRNAAVVLR
Subjt:  VIRSLPNEYVQRYLAMRNAAVVLR

SwissProt top hitse value%identityAlignment
P32617 Chromatin-remodeling complex subunit IES64.6e-0838.81Show/hide
Query:  YVNIESPPSMHPCKKICDITGYEAPYYDPRTTLRYANADIFK-VIRSLPNEYVQRYLAMRNAAVVLR
        Y ++E+PPS+ P KK CD+TG +  Y  P   +RY NA+I++ +++ +     Q YL +R A  VL+
Subjt:  YVNIESPPSMHPCKKICDITGYEAPYYDPRTTLRYANADIFK-VIRSLPNEYVQRYLAMRNAAVVLR

Q5BJY3 INO80 complex subunit C8.7e-1541.76Show/hide
Query:  RGRHWKHLKQILQAENYHNYSSDEPNYVNIESPPSMHPCKKICDITGYEAPYYDPRTTLRYANADIFKVIRSLPNEYVQRYLAMRNAAVVL
        + R WK+LKQIL AE    +  ++PNY +I++PPS  P KK  D++G  A Y DP++ LR++  + F  IR LP++ V  YL +R A  ++
Subjt:  RGRHWKHLKQILQAENYHNYSSDEPNYVNIESPPSMHPCKKICDITGYEAPYYDPRTTLRYANADIFKVIRSLPNEYVQRYLAMRNAAVVL

Q6PI98 INO80 complex subunit C8.7e-1541.76Show/hide
Query:  RGRHWKHLKQILQAENYHNYSSDEPNYVNIESPPSMHPCKKICDITGYEAPYYDPRTTLRYANADIFKVIRSLPNEYVQRYLAMRNAAVVL
        + R WK+LKQIL +E    +  ++PNY +I++PPS  P KK  D++G  A Y DP++ LR++  + F  IR LP++ V  YLA+R A  ++
Subjt:  RGRHWKHLKQILQAENYHNYSSDEPNYVNIESPPSMHPCKKICDITGYEAPYYDPRTTLRYANADIFKVIRSLPNEYVQRYLAMRNAAVVL

Q8BHA0 INO80 complex subunit C2.3e-1543.96Show/hide
Query:  RGRHWKHLKQILQAENYHNYSSDEPNYVNIESPPSMHPCKKICDITGYEAPYYDPRTTLRYANADIFKVIRSLPNEYVQRYLAMRNAAVVL
        + R WK+LKQIL AE    +  ++PNY +I++PPS  P KK  DI+G  A Y DP++ LR++  + F  IR LP++ V  YLA+R A  ++
Subjt:  RGRHWKHLKQILQAENYHNYSSDEPNYVNIESPPSMHPCKKICDITGYEAPYYDPRTTLRYANADIFKVIRSLPNEYVQRYLAMRNAAVVL

Q9UTE8 Chromatin-remodeling complex subunit ies64.8e-1342.27Show/hide
Query:  PKGQSRGRHWKHLKQILQAENYHNYSSDEPNYVNIESPPSMHPCKKICDITGYEAPYYDPRTTLRYANADIFKVIRSLPNEYVQRYLAMRNAAVVLR
        P  +++ R  ++L+QI+Q +   N  S + +Y +IE+PPS+ P  K CD+TG  A Y DP+T LRY N +I+ +IR LP+   Q YL +R++ VVL+
Subjt:  PKGQSRGRHWKHLKQILQAENYHNYSSDEPNYVNIESPPSMHPCKKICDITGYEAPYYDPRTTLRYANADIFKVIRSLPNEYVQRYLAMRNAAVVLR

Arabidopsis top hitse value%identityAlignment
AT4G38495.1 CONTAINS InterPro DOMAIN/s: YL1 nuclear, C-terminal (InterPro:IPR013272); Has 279 Blast hits to 279 proteins in 147 species: Archae - 0; Bacteria - 0; Metazoa - 94; Fungi - 133; Plants - 35; Viruses - 0; Other Eukaryotes - 17 (source: NCBI BLink).5.9e-4363.71Show/hide
Query:  MEPEVIEAELVLPTHLNFKRIQMYEKYPKGQSRGRHWKHLKQILQAENYHNYSSDEPNYVNIESPPSMHPCKKICDITGYEAPYYDPRTTLRYANADIFK
        ME E++EA++V+ + L+FK+ Q YEKYPK QS  R WKHLKQILQAEN+ +   D P YVNIESPPS  PCK++CDITGYEAPY DPRT LRYANA +F+
Subjt:  MEPEVIEAELVLPTHLNFKRIQMYEKYPKGQSRGRHWKHLKQILQAENYHNYSSDEPNYVNIESPPSMHPCKKICDITGYEAPYYDPRTTLRYANADIFK

Query:  VIRSLPNEYVQRYLAMRNAAVVLR
         +RSL ++ V +YL++RNAAVVL+
Subjt:  VIRSLPNEYVQRYLAMRNAAVVLR


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGAGCCGGAGGTGATAGAAGCAGAGTTAGTGTTGCCGACTCACCTGAATTTCAAGCGAATTCAAATGTACGAGAAGTATCCGAAAGGCCAATCCAGAGGCAGGCACTG
GAAGCATCTGAAGCAGATTCTTCAAGCCGAGAATTATCACAACTACTCATCTGATGAACCCAACTATGTTAATATCGAGTCACCTCCGTCGATGCATCCATGCAAGAAAA
TTTGTGATATAACAGGATATGAGGCACCATACTATGATCCCAGGACTACTCTTCGATATGCAAATGCTGATATCTTCAAGGTCATAAGATCACTTCCTAATGAGTATGTT
CAGAGGTATTTGGCCATGAGAAATGCAGCTGTTGTTTTAAGATGA
mRNA sequenceShow/hide mRNA sequence
CGGCCGCTAATGGAGTCGAGCAATGCGTAGGGTTTATGCTTCTATAGAGCTTTGTTTTCTTTGAAATTTCTTCATAACCTTTGAATGTCGTAAAAGATTTCAGAAACCAG
AAGGCGTTAATAGAAGTTGACGATGGAGCCGGAGGTGATAGAAGCAGAGTTAGTGTTGCCGACTCACCTGAATTTCAAGCGAATTCAAATGTACGAGAAGTATCCGAAAG
GCCAATCCAGAGGCAGGCACTGGAAGCATCTGAAGCAGATTCTTCAAGCCGAGAATTATCACAACTACTCATCTGATGAACCCAACTATGTTAATATCGAGTCACCTCCG
TCGATGCATCCATGCAAGAAAATTTGTGATATAACAGGATATGAGGCACCATACTATGATCCCAGGACTACTCTTCGATATGCAAATGCTGATATCTTCAAGGTCATAAG
ATCACTTCCTAATGAGTATGTTCAGAGGTATTTGGCCATGAGAAATGCAGCTGTTGTTTTAAGATGAAGAGATACTACTTTTCTATTGCCGATTAGCTCGGCGTCGAACG
AGACCTCCATCTCGTGGCAGAAAATGCAGTGTGAATACTTAAAATGCATCATTTGTGTATTGATTCAATCATTTTGTGTATTAAATGGTCTTGGAATGCATTTTATGTTT
GCCTTTGGAACTATTAGCCAAAGTTGATTCATTTGGTTAAAACTCTCCAAGCTGAAAACATCCCCTAATGGGATTGCAGTTGAAGAAAATTTAAGGCCTAAAACTCGGTT
CTATACCTCGAATCTTGAATGATTTCTATGACTTCTATGTACCGTCCGTATCAGTAACTAAATAATGATGTCACGTTTATTGTACA
Protein sequenceShow/hide protein sequence
MEPEVIEAELVLPTHLNFKRIQMYEKYPKGQSRGRHWKHLKQILQAENYHNYSSDEPNYVNIESPPSMHPCKKICDITGYEAPYYDPRTTLRYANADIFKVIRSLPNEYV
QRYLAMRNAAVVLR