; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

CmoCh12G009900 (gene) of Cucurbita moschata (Rifu) v1 genome

Gene IDCmoCh12G009900
OrganismCucurbita moschata Rifu (Cucurbita moschata (Rifu) v1)
Descriptionphotosystem I reaction center subunit IV, chloroplastic-like
Genome locationCmo_Chr12:9266620..9268039
RNA-Seq ExpressionCmoCh12G009900
SyntenyCmoCh12G009900
Gene Ontology termsGO:0015979 - photosynthesis (biological process)
GO:0009535 - chloroplast thylakoid membrane (cellular component)
GO:0009538 - photosystem I reaction center (cellular component)
InterPro domainsIPR003375 - Photosystem I PsaE, reaction centre subunit IV
IPR008990 - Electron transport accessory-like domain superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_008441802.1 PREDICTED: photosystem I reaction center subunit IV, chloroplastic-like [Cucumis melo]3.6e-5282.47Show/hide
Query:  MAASNLSCIASGVIIPSSTTI-SSSSRPSSVAFFPKNSISISRSCRLVVRAAADEAAAPPPAAAATADAPAEAPKPKPAPIGPKRGTKTLKSCHGFEQVK
        MAASNLSCIASGV+IPSSTTI SSSSR SS+AFFPKNS SISRS RLV+RAAA + AAPPP AAA A A AE PKPKPAPIGPKRG K          VK
Subjt:  MAASNLSCIASGVIIPSSTTI-SSSSRPSSVAFFPKNSISISRSCRLVVRAAADEAAAPPPAAAATADAPAEAPKPKPAPIGPKRGTKTLKSCHGFEQVK

Query:  ILRRESYWYKDVGSVVTVDQDPNTRYPVVVRFNKVNYASVSTNNYALDEIEEVA
        ILR+ESYWYKDVGSVVTVDQDPNTRYPVVVRFNKVNYASVSTNNYALDEIEEVA
Subjt:  ILRRESYWYKDVGSVVTVDQDPNTRYPVVVRFNKVNYASVSTNNYALDEIEEVA

XP_022144405.1 photosystem I reaction center subunit IV, chloroplastic-like [Momordica charantia]2.1e-5281.7Show/hide
Query:  MAASNLSCIASGVIIPSSTTISSSSRPSSVAFFPKNSISISRSCRLVVRAAADEAAAPPPAAAATADAPAEAPKPKPAPIGPKRGTKTLKSCHGFEQVKI
        MAA+NLSCIASGV+IPSS TISSSSR +SVAFFPKN   ISR  RLV+RAAADEAA PPPAAAATADAP E  KPKPAPIGPKRG K          VKI
Subjt:  MAASNLSCIASGVIIPSSTTISSSSRPSSVAFFPKNSISISRSCRLVVRAAADEAAAPPPAAAATADAPAEAPKPKPAPIGPKRGTKTLKSCHGFEQVKI

Query:  LRRESYWYKDVGSVVTVDQDPNTRYPVVVRFNKVNYASVSTNNYALDEIEEVA
        LR+ESYWYKDVGSVVTVDQDPNTRYPVVVRFNKVNYASVSTNNYALDE+EEVA
Subjt:  LRRESYWYKDVGSVVTVDQDPNTRYPVVVRFNKVNYASVSTNNYALDEIEEVA

XP_022937722.1 photosystem I reaction center subunit IV, chloroplastic-like [Cucurbita moschata]1.6e-6393.46Show/hide
Query:  MAASNLSCIASGVIIPSSTTISSSSRPSSVAFFPKNSISISRSCRLVVRAAADEAAAPPPAAAATADAPAEAPKPKPAPIGPKRGTKTLKSCHGFEQVKI
        MAASNLSCIASGVIIPSSTTISSSSRPSSVAFFPKNSISISRSCRLVVRAAADEAAAPPPAAAATADAPAEAPKPKPAPIGPKRGTK          VKI
Subjt:  MAASNLSCIASGVIIPSSTTISSSSRPSSVAFFPKNSISISRSCRLVVRAAADEAAAPPPAAAATADAPAEAPKPKPAPIGPKRGTKTLKSCHGFEQVKI

Query:  LRRESYWYKDVGSVVTVDQDPNTRYPVVVRFNKVNYASVSTNNYALDEIEEVA
        LRRESYWYKDVGSVVTVDQDPNTRYPVVVRFNKVNYASVSTNNYALDEIEEVA
Subjt:  LRRESYWYKDVGSVVTVDQDPNTRYPVVVRFNKVNYASVSTNNYALDEIEEVA

XP_022965997.1 photosystem I reaction center subunit IV, chloroplastic-like [Cucurbita maxima]2.3e-6292.16Show/hide
Query:  MAASNLSCIASGVIIPSSTTISSSSRPSSVAFFPKNSISISRSCRLVVRAAADEAAAPPPAAAATADAPAEAPKPKPAPIGPKRGTKTLKSCHGFEQVKI
        MAASNLSCIASGVIIPSS TISSSSRPSSVAFFPKNSISISRSCRLVVRAAADEAAAPPPAAAATADAPAE PKPKPAPIGPKRGTK          VKI
Subjt:  MAASNLSCIASGVIIPSSTTISSSSRPSSVAFFPKNSISISRSCRLVVRAAADEAAAPPPAAAATADAPAEAPKPKPAPIGPKRGTKTLKSCHGFEQVKI

Query:  LRRESYWYKDVGSVVTVDQDPNTRYPVVVRFNKVNYASVSTNNYALDEIEEVA
        LRRESYWYKDVGSVVTVDQDPNTRYPVVVRFNKVNYASVSTNNYALDEIEEVA
Subjt:  LRRESYWYKDVGSVVTVDQDPNTRYPVVVRFNKVNYASVSTNNYALDEIEEVA

XP_023536804.1 photosystem I reaction center subunit IV, chloroplastic-like [Cucurbita pepo subsp. pepo]1.7e-6292.16Show/hide
Query:  MAASNLSCIASGVIIPSSTTISSSSRPSSVAFFPKNSISISRSCRLVVRAAADEAAAPPPAAAATADAPAEAPKPKPAPIGPKRGTKTLKSCHGFEQVKI
        MAASNLSCIASGVIIPSS TISSSSRPSSVAFFPKNSISISRSCRLVVRAAADEAAAPPPAAAATADAPAEAPKPKPAPIGPKRGTK          VKI
Subjt:  MAASNLSCIASGVIIPSSTTISSSSRPSSVAFFPKNSISISRSCRLVVRAAADEAAAPPPAAAATADAPAEAPKPKPAPIGPKRGTKTLKSCHGFEQVKI

Query:  LRRESYWYKDVGSVVTVDQDPNTRYPVVVRFNKVNYASVSTNNYALDEIEEVA
        LR+ESYWYKDVGSVVTVDQDPNTRYPVVVRFNKVNYASVSTNNYALDEIEEVA
Subjt:  LRRESYWYKDVGSVVTVDQDPNTRYPVVVRFNKVNYASVSTNNYALDEIEEVA

TrEMBL top hitse value%identityAlignment
A0A0A0LJQ1 Uncharacterized protein4.1e-4979.22Show/hide
Query:  MAASNLSCIASGVIIPSSTTI-SSSSRPSSVAFFPKNSISISRSCRLVVRAAADEAAAPPPAAAATADAPAEAPKPKPAPIGPKRGTKTLKSCHGFEQVK
        MAASNLSCIASGV+IPSSTTI SSSSR SS+AFFPKNS SISRS RLV+RA+  + AAPPPAA A   A  E PKPKPAPIGPKRG K          VK
Subjt:  MAASNLSCIASGVIIPSSTTI-SSSSRPSSVAFFPKNSISISRSCRLVVRAAADEAAAPPPAAAATADAPAEAPKPKPAPIGPKRGTKTLKSCHGFEQVK

Query:  ILRRESYWYKDVGSVVTVDQDPNTRYPVVVRFNKVNYASVSTNNYALDEIEEVA
        ILR+ESYWYKDVGSVVTVDQDPNTRYPVVVRFNKVNYASVSTNNYALDEI+EVA
Subjt:  ILRRESYWYKDVGSVVTVDQDPNTRYPVVVRFNKVNYASVSTNNYALDEIEEVA

A0A1S3B3T3 photosystem I reaction center subunit IV, chloroplastic-like1.8e-5282.47Show/hide
Query:  MAASNLSCIASGVIIPSSTTI-SSSSRPSSVAFFPKNSISISRSCRLVVRAAADEAAAPPPAAAATADAPAEAPKPKPAPIGPKRGTKTLKSCHGFEQVK
        MAASNLSCIASGV+IPSSTTI SSSSR SS+AFFPKNS SISRS RLV+RAAA + AAPPP AAA A A AE PKPKPAPIGPKRG K          VK
Subjt:  MAASNLSCIASGVIIPSSTTI-SSSSRPSSVAFFPKNSISISRSCRLVVRAAADEAAAPPPAAAATADAPAEAPKPKPAPIGPKRGTKTLKSCHGFEQVK

Query:  ILRRESYWYKDVGSVVTVDQDPNTRYPVVVRFNKVNYASVSTNNYALDEIEEVA
        ILR+ESYWYKDVGSVVTVDQDPNTRYPVVVRFNKVNYASVSTNNYALDEIEEVA
Subjt:  ILRRESYWYKDVGSVVTVDQDPNTRYPVVVRFNKVNYASVSTNNYALDEIEEVA

A0A6J1CRI6 photosystem I reaction center subunit IV, chloroplastic-like1.0e-5281.7Show/hide
Query:  MAASNLSCIASGVIIPSSTTISSSSRPSSVAFFPKNSISISRSCRLVVRAAADEAAAPPPAAAATADAPAEAPKPKPAPIGPKRGTKTLKSCHGFEQVKI
        MAA+NLSCIASGV+IPSS TISSSSR +SVAFFPKN   ISR  RLV+RAAADEAA PPPAAAATADAP E  KPKPAPIGPKRG K          VKI
Subjt:  MAASNLSCIASGVIIPSSTTISSSSRPSSVAFFPKNSISISRSCRLVVRAAADEAAAPPPAAAATADAPAEAPKPKPAPIGPKRGTKTLKSCHGFEQVKI

Query:  LRRESYWYKDVGSVVTVDQDPNTRYPVVVRFNKVNYASVSTNNYALDEIEEVA
        LR+ESYWYKDVGSVVTVDQDPNTRYPVVVRFNKVNYASVSTNNYALDE+EEVA
Subjt:  LRRESYWYKDVGSVVTVDQDPNTRYPVVVRFNKVNYASVSTNNYALDEIEEVA

A0A6J1FC09 photosystem I reaction center subunit IV, chloroplastic-like7.6e-6493.46Show/hide
Query:  MAASNLSCIASGVIIPSSTTISSSSRPSSVAFFPKNSISISRSCRLVVRAAADEAAAPPPAAAATADAPAEAPKPKPAPIGPKRGTKTLKSCHGFEQVKI
        MAASNLSCIASGVIIPSSTTISSSSRPSSVAFFPKNSISISRSCRLVVRAAADEAAAPPPAAAATADAPAEAPKPKPAPIGPKRGTK          VKI
Subjt:  MAASNLSCIASGVIIPSSTTISSSSRPSSVAFFPKNSISISRSCRLVVRAAADEAAAPPPAAAATADAPAEAPKPKPAPIGPKRGTKTLKSCHGFEQVKI

Query:  LRRESYWYKDVGSVVTVDQDPNTRYPVVVRFNKVNYASVSTNNYALDEIEEVA
        LRRESYWYKDVGSVVTVDQDPNTRYPVVVRFNKVNYASVSTNNYALDEIEEVA
Subjt:  LRRESYWYKDVGSVVTVDQDPNTRYPVVVRFNKVNYASVSTNNYALDEIEEVA

A0A6J1HLT8 photosystem I reaction center subunit IV, chloroplastic-like1.1e-6292.16Show/hide
Query:  MAASNLSCIASGVIIPSSTTISSSSRPSSVAFFPKNSISISRSCRLVVRAAADEAAAPPPAAAATADAPAEAPKPKPAPIGPKRGTKTLKSCHGFEQVKI
        MAASNLSCIASGVIIPSS TISSSSRPSSVAFFPKNSISISRSCRLVVRAAADEAAAPPPAAAATADAPAE PKPKPAPIGPKRGTK          VKI
Subjt:  MAASNLSCIASGVIIPSSTTISSSSRPSSVAFFPKNSISISRSCRLVVRAAADEAAAPPPAAAATADAPAEAPKPKPAPIGPKRGTKTLKSCHGFEQVKI

Query:  LRRESYWYKDVGSVVTVDQDPNTRYPVVVRFNKVNYASVSTNNYALDEIEEVA
        LRRESYWYKDVGSVVTVDQDPNTRYPVVVRFNKVNYASVSTNNYALDEIEEVA
Subjt:  LRRESYWYKDVGSVVTVDQDPNTRYPVVVRFNKVNYASVSTNNYALDEIEEVA

SwissProt top hitse value%identityAlignment
P12354 Photosystem I reaction center subunit IV, chloroplastic1.0e-2859.85Show/hide
Query:  SSTTISSSSRPSSVAFFPKNSISISRSCRLVVRAAADEAAAPPPAAAATADAPAEAPKPKPAPIGPKRGTKTLKSCHGFEQVKILRRESYWYKDVGSVVT
        +S   S + R       P  + S  RS RLVVR AA+EAAA P AA+   +AP  A   KP PIGPKRG+K          V+I+R+ESYWYK VGSVV 
Subjt:  SSTTISSSSRPSSVAFFPKNSISISRSCRLVVRAAADEAAAPPPAAAATADAPAEAPKPKPAPIGPKRGTKTLKSCHGFEQVKILRRESYWYKDVGSVVT

Query:  VDQDPNTRYPVVVRFNKVNYASVSTNNYALDEIEEVA
        VDQDP TRYPVVVRFNKVNYA+VSTNNYALDEI+EVA
Subjt:  VDQDPNTRYPVVVRFNKVNYASVSTNNYALDEIEEVA

Q41228 Photosystem I reaction center subunit IV A, chloroplastic1.8e-3058.97Show/hide
Query:  MAASNLSCIASGVII--PSSTTISSSSRPSSVAFFPKNSISISRSCRLVVRAAADEAAAPPPAAAATADAPAEAP--KPKPAPIGPKRGTKTLKSCHGFE
        MA+ N++  AS  ++  P+  + +++SR + + F  KN  S +   RLVVRAA +   A PPAAAATA+ PAEAP    KP PIGPKRGTK         
Subjt:  MAASNLSCIASGVII--PSSTTISSSSRPSSVAFFPKNSISISRSCRLVVRAAADEAAAPPPAAAATADAPAEAP--KPKPAPIGPKRGTKTLKSCHGFE

Query:  QVKILRRESYWYKDVGSVVTVDQDPNTRYPVVVRFNKVNYASVSTNNYALDEIEEV
         V+ILR+ESYWYK  GSVV  DQDPNTRYPVVVRFNKVNYA+VSTNNYALDEIEEV
Subjt:  QVKILRRESYWYKDVGSVVTVDQDPNTRYPVVVRFNKVNYASVSTNNYALDEIEEV

Q41229 Photosystem I reaction center subunit IV B, chloroplastic1.8e-3056.13Show/hide
Query:  MAASNLSCIASGVII--PSSTTISSSSRPSSVAFFPKNSISISRSCRLVVRAAADEAAAPPPAAAATADAPAEAPK-PKPAPIGPKRGTKTLKSCHGFEQ
        MA+S+++  ASG ++  P+  T +++ R S + F    + + +   RLVVRAA +   A PPAA ATA+  A   K  KP PIGPKRGTK          
Subjt:  MAASNLSCIASGVII--PSSTTISSSSRPSSVAFFPKNSISISRSCRLVVRAAADEAAAPPPAAAATADAPAEAPK-PKPAPIGPKRGTKTLKSCHGFEQ

Query:  VKILRRESYWYKDVGSVVTVDQDPNTRYPVVVRFNKVNYASVSTNNYALDEIEEV
        V++LR+ESYWYK VGSVV VDQDPNTRYPVVVRFNKVNYA+VSTNNYALDE+EEV
Subjt:  VKILRRESYWYKDVGSVVTVDQDPNTRYPVVVRFNKVNYASVSTNNYALDEIEEV

Q9S714 Photosystem I reaction center subunit IV B, chloroplastic5.5e-2755.78Show/hide
Query:  IPSSTTISSSSRPSSVAFFPKNSISISRSCRLVVRAAADEAAAPPPAAAAT-------ADAPAEAP--KPKPAPIGPKRGTKTLKSCHGFEQVKILRRES
        +P++    SS   + V+F P  S       RLVVRAA D     PPA A++       A APA+ P  K KP PIGPKRG+K          VKILR+ES
Subjt:  IPSSTTISSSSRPSSVAFFPKNSISISRSCRLVVRAAADEAAAPPPAAAAT-------ADAPAEAP--KPKPAPIGPKRGTKTLKSCHGFEQVKILRRES

Query:  YWYKDVGSVVTVDQDPNTRYPVVVRFNKVNYASVSTNNYALDEIEEV
        YWYK+VGSVV VDQDP TRYPVVVRF KVNYA++STNNYALDE+EEV
Subjt:  YWYKDVGSVVTVDQDPNTRYPVVVRFNKVNYASVSTNNYALDEIEEV

Q9S831 Photosystem I reaction center subunit IV A, chloroplastic1.5e-2959.18Show/hide
Query:  IIPSSTT--ISSSSRPSSVAFFPKNSISISRSCRLVVRAAADEAAA-----PPPAAAATADAPAEAPKPKPAPIGPKRGTKTLKSCHGFEQVKILRRESY
        ++P++ T    +SS  SSV+F P      +   RLVVRAA D A A       PAAAA  D  A A KPKP PIGPKRG+K          VKILRRESY
Subjt:  IIPSSTT--ISSSSRPSSVAFFPKNSISISRSCRLVVRAAADEAAA-----PPPAAAATADAPAEAPKPKPAPIGPKRGTKTLKSCHGFEQVKILRRESY

Query:  WYKDVGSVVTVDQDPNTRYPVVVRFNKVNYASVSTNNYALDEIEEVA
        W+K+VGSVV VDQDP TRYPVVVRF KVNYA++STNNYALDE+EEVA
Subjt:  WYKDVGSVVTVDQDPNTRYPVVVRFNKVNYASVSTNNYALDEIEEVA

Arabidopsis top hitse value%identityAlignment
AT2G20260.1 photosystem I subunit E-23.9e-2855.78Show/hide
Query:  IPSSTTISSSSRPSSVAFFPKNSISISRSCRLVVRAAADEAAAPPPAAAAT-------ADAPAEAP--KPKPAPIGPKRGTKTLKSCHGFEQVKILRRES
        +P++    SS   + V+F P  S       RLVVRAA D     PPA A++       A APA+ P  K KP PIGPKRG+K          VKILR+ES
Subjt:  IPSSTTISSSSRPSSVAFFPKNSISISRSCRLVVRAAADEAAAPPPAAAAT-------ADAPAEAP--KPKPAPIGPKRGTKTLKSCHGFEQVKILRRES

Query:  YWYKDVGSVVTVDQDPNTRYPVVVRFNKVNYASVSTNNYALDEIEEV
        YWYK+VGSVV VDQDP TRYPVVVRF KVNYA++STNNYALDE+EEV
Subjt:  YWYKDVGSVVTVDQDPNTRYPVVVRFNKVNYASVSTNNYALDEIEEV

AT4G28750.1 Photosystem I reaction centre subunit IV / PsaE protein1.1e-3059.18Show/hide
Query:  IIPSSTT--ISSSSRPSSVAFFPKNSISISRSCRLVVRAAADEAAA-----PPPAAAATADAPAEAPKPKPAPIGPKRGTKTLKSCHGFEQVKILRRESY
        ++P++ T    +SS  SSV+F P      +   RLVVRAA D A A       PAAAA  D  A A KPKP PIGPKRG+K          VKILRRESY
Subjt:  IIPSSTT--ISSSSRPSSVAFFPKNSISISRSCRLVVRAAADEAAA-----PPPAAAATADAPAEAPKPKPAPIGPKRGTKTLKSCHGFEQVKILRRESY

Query:  WYKDVGSVVTVDQDPNTRYPVVVRFNKVNYASVSTNNYALDEIEEVA
        W+K+VGSVV VDQDP TRYPVVVRF KVNYA++STNNYALDE+EEVA
Subjt:  WYKDVGSVVTVDQDPNTRYPVVVRFNKVNYASVSTNNYALDEIEEVA


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGCTGCCTCTAACCTTTCATGCATCGCTTCTGGTGTGATCATACCATCTTCAACCACCATTTCTTCCTCTTCTAGGCCATCTTCTGTGGCTTTCTTCCCCAAGAATTC
CATCTCTATTTCGAGATCATGTCGATTGGTTGTCCGGGCCGCCGCCGATGAGGCCGCTGCCCCTCCCCCTGCTGCCGCTGCCACCGCCGACGCCCCCGCTGAAGCGCCCA
AGCCTAAGCCGGCCCCAATTGGCCCCAAGAGAGGTACCAAGACGCTCAAATCTTGTCATGGATTTGAACAGGTGAAGATTTTGAGGAGAGAGTCCTATTGGTACAAGGAT
GTTGGATCTGTTGTCACGGTTGACCAGGACCCGAACACTCGATATCCAGTTGTGGTTAGATTTAACAAAGTAAATTATGCAAGTGTATCAACAAACAACTATGCACTTGA
TGAGATTGAAGAAGTTGCTTAA
mRNA sequenceShow/hide mRNA sequence
AATTGGTTGAAAACCCAAGAACCAAATCCCACGAAGAATTATTATGTGGCCATCATTATTTCATTGGTTTATCATATTGAACGTTCAAATCTCATCTTCAAGCCATTAAC
ACTCAACCTTCCCTTCACTTCACCAAACCAAGAGAGCCCATGGCTGCCTCTAACCTTTCATGCATCGCTTCTGGTGTGATCATACCATCTTCAACCACCATTTCTTCCTC
TTCTAGGCCATCTTCTGTGGCTTTCTTCCCCAAGAATTCCATCTCTATTTCGAGATCATGTCGATTGGTTGTCCGGGCCGCCGCCGATGAGGCCGCTGCCCCTCCCCCTG
CTGCCGCTGCCACCGCCGACGCCCCCGCTGAAGCGCCCAAGCCTAAGCCGGCCCCAATTGGCCCCAAGAGAGGTACCAAGACGCTCAAATCTTGTCATGGATTTGAACAG
GTGAAGATTTTGAGGAGAGAGTCCTATTGGTACAAGGATGTTGGATCTGTTGTCACGGTTGACCAGGACCCGAACACTCGATATCCAGTTGTGGTTAGATTTAACAAAGT
AAATTATGCAAGTGTATCAACAAACAACTATGCACTTGATGAGATTGAAGAAGTTGCTTAAGCTTTTTATGTGGTTTTGATTTTTTAGTTAAATGTTTGTATAATACTTC
CAATTTCAATCTATTTCTCCTCTCTCCATGAGTGTGTTTAGTAATTCTTCCCATGATCTCTCTTCATTAATATATTTGAAAAGGATCGATAACGTGATTCGATGATATTT
AGATTCTGAGCTCGATATGGGCACTTATTATGCAAAAGTATATGGGGTCGTGGTAGTTGTGTATTCCACGTAGGTACATGACTACCATAATCTTATACAAACCTAAGAAT
TTGTTTAATCTGGTGTTTGAGCGTTCTAGTAGTAAAGTCA
Protein sequenceShow/hide protein sequence
MAASNLSCIASGVIIPSSTTISSSSRPSSVAFFPKNSISISRSCRLVVRAAADEAAAPPPAAAATADAPAEAPKPKPAPIGPKRGTKTLKSCHGFEQVKILRRESYWYKD
VGSVVTVDQDPNTRYPVVVRFNKVNYASVSTNNYALDEIEEVA