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CmoCh12G009990 (gene) of Cucurbita moschata (Rifu) v1 genome

Gene IDCmoCh12G009990
OrganismCucurbita moschata Rifu (Cucurbita moschata (Rifu) v1)
Descriptionphotosystem II reaction center protein H
Genome locationCmo_Chr12:9334496..9334823
RNA-Seq ExpressionCmoCh12G009990
SyntenyCmoCh12G009990
Gene Ontology termsGO:0015979 - photosynthesis (biological process)
GO:0050821 - protein stabilization (biological process)
GO:0009507 - chloroplast (cellular component)
GO:0009523 - photosystem II (cellular component)
GO:0042651 - thylakoid membrane (cellular component)
GO:0042301 - phosphate ion binding (molecular function)
InterPro domainsIPR001056 - Photosystem II reaction centre protein H
IPR036863 - Photosystem II reaction centre protein H superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
AYP34097.1 photosystem II phosphoprotein [Musa coccinea]4.2e-0869.57Show/hide
Query:  MHDKYRQNPMAKTIIVGNLLKPLNSKYGKVAPGWGTTPLMGVTMDL
        + D +R  P   T  VGNLLKPLNS+YGKVAPGWGTTPLMGV M L
Subjt:  MHDKYRQNPMAKTIIVGNLLKPLNSKYGKVAPGWGTTPLMGVTMDL

QHF17049.1 PsbH [Stahlianthus involucratus]4.2e-0871.74Show/hide
Query:  MHDKYRQNPMAKTIIVGNLLKPLNSKYGKVAPGWGTTPLMGVTMDL
        + D  R  P   T  VGNLLKPLNS+YGKVAPGWGTTPLMGVTM L
Subjt:  MHDKYRQNPMAKTIIVGNLLKPLNSKYGKVAPGWGTTPLMGVTMDL

XP_027912312.1 uncharacterized protein LOC114171562 [Vigna unguiculata]3.2e-0860.71Show/hide
Query:  KILQGSQVLEMHDKYRQNPMAKTIIVGNLLKPLNSKYGKVAPGWGTTPLMGVTMDL
        +I   +Q +E  D  R  P  +  +VGNLLKPLNS+YGKVAPGWGTTPLMGV M L
Subjt:  KILQGSQVLEMHDKYRQNPMAKTIIVGNLLKPLNSKYGKVAPGWGTTPLMGVTMDL

YP_002836119.1 photosystem II phosphoprotein [Megaleranthis saniculifolia]3.2e-0869.39Show/hide
Query:  RQNPMAKTIIVGNLLKPLNSKYGKVAPGWGTTPLMG-VTMDLCDIPIYY
        R  P   T  VGNLLKPLNS+YGKVAPGWGTTPLMG     +C IPIYY
Subjt:  RQNPMAKTIIVGNLLKPLNSKYGKVAPGWGTTPLMG-VTMDLCDIPIYY

YP_009500601.1 photosystem II 10 kDa phosphoprotein [Plagiorhegma dubium]3.2e-0860.78Show/hide
Query:  SQVLEMHDKYRQNPMAKTIIVGNLLKPLNSKYGKVAPGWGTTPLMGVTMDL
        +Q +E + +    P  +T  +GNLLKPLNS+YGKVAPGWGTTPLMGV M L
Subjt:  SQVLEMHDKYRQNPMAKTIIVGNLLKPLNSKYGKVAPGWGTTPLMGVTMDL

TrEMBL top hitse value%identityAlignment
A0A344A0R1 Photosystem II reaction center protein H1.6e-0860.78Show/hide
Query:  SQVLEMHDKYRQNPMAKTIIVGNLLKPLNSKYGKVAPGWGTTPLMGVTMDL
        +Q +E + +    P  +T  +GNLLKPLNS+YGKVAPGWGTTPLMGV M L
Subjt:  SQVLEMHDKYRQNPMAKTIIVGNLLKPLNSKYGKVAPGWGTTPLMGVTMDL

A0A3G2Z3L3 Photosystem II reaction center protein H2.0e-0869.57Show/hide
Query:  MHDKYRQNPMAKTIIVGNLLKPLNSKYGKVAPGWGTTPLMGVTMDL
        + D +R  P   T  VGNLLKPLNS+YGKVAPGWGTTPLMGV M L
Subjt:  MHDKYRQNPMAKTIIVGNLLKPLNSKYGKVAPGWGTTPLMGVTMDL

A0A6B9QJQ5 Photosystem II reaction center protein H2.0e-0871.74Show/hide
Query:  MHDKYRQNPMAKTIIVGNLLKPLNSKYGKVAPGWGTTPLMGVTMDL
        + D  R  P   T  VGNLLKPLNS+YGKVAPGWGTTPLMGVTM L
Subjt:  MHDKYRQNPMAKTIIVGNLLKPLNSKYGKVAPGWGTTPLMGVTMDL

A0A7M3UKR8 Photosystem II reaction center protein H1.6e-0860.78Show/hide
Query:  SQVLEMHDKYRQNPMAKTIIVGNLLKPLNSKYGKVAPGWGTTPLMGVTMDL
        +Q +E + +    P  +T  +GNLLKPLNS+YGKVAPGWGTTPLMGV M L
Subjt:  SQVLEMHDKYRQNPMAKTIIVGNLLKPLNSKYGKVAPGWGTTPLMGVTMDL

C3UP01 Photosystem II phosphoprotein1.6e-0869.39Show/hide
Query:  RQNPMAKTIIVGNLLKPLNSKYGKVAPGWGTTPLMG-VTMDLCDIPIYY
        R  P   T  VGNLLKPLNS+YGKVAPGWGTTPLMG     +C IPIYY
Subjt:  RQNPMAKTIIVGNLLKPLNSKYGKVAPGWGTTPLMG-VTMDLCDIPIYY

SwissProt top hitse value%identityAlignment
P56780 Photosystem II reaction center protein H6.1e-1067.39Show/hide
Query:  MHDKYRQNPMAKTIIVGNLLKPLNSKYGKVAPGWGTTPLMGVTMDL
        + D  R  P + T  VG LLKPLNS+YGKVAPGWGTTPLMGV M L
Subjt:  MHDKYRQNPMAKTIIVGNLLKPLNSKYGKVAPGWGTTPLMGVTMDL

Q06RA3 Photosystem II reaction center protein H2.8e-1062.75Show/hide
Query:  SQVLEMHDKYRQNPMAKTIIVGNLLKPLNSKYGKVAPGWGTTPLMGVTMDL
        +Q +E   + R  P     IVG+LLKPLNS+YGKVAPGWGTTPLMGV M L
Subjt:  SQVLEMHDKYRQNPMAKTIIVGNLLKPLNSKYGKVAPGWGTTPLMGVTMDL

Q2PMQ6 Photosystem II reaction center protein H4.7e-1065.22Show/hide
Query:  MHDKYRQNPMAKTIIVGNLLKPLNSKYGKVAPGWGTTPLMGVTMDL
        + D  R  P  +  +VG+LLKPLNS+YGKVAPGWGTTPLMGV M L
Subjt:  MHDKYRQNPMAKTIIVGNLLKPLNSKYGKVAPGWGTTPLMGVTMDL

Q68RX8 Photosystem II reaction center protein H4.7e-1062.75Show/hide
Query:  SQVLEMHDKYRQNPMAKTIIVGNLLKPLNSKYGKVAPGWGTTPLMGVTMDL
        +Q +E   + R  P      VGNLLKPLNS+YGKVAPGWGTTPLMGV M L
Subjt:  SQVLEMHDKYRQNPMAKTIIVGNLLKPLNSKYGKVAPGWGTTPLMGVTMDL

Q70XX9 Photosystem II reaction center protein H1.0e-0965.22Show/hide
Query:  MHDKYRQNPMAKTIIVGNLLKPLNSKYGKVAPGWGTTPLMGVTMDL
        + D  R  P  +  IVG+LLKPLNS+YGKVAPGWGTTP MGV M L
Subjt:  MHDKYRQNPMAKTIIVGNLLKPLNSKYGKVAPGWGTTPLMGVTMDL

Arabidopsis top hitse value%identityAlignment
ATCG00710.1 photosystem II reaction center protein H4.4e-1167.39Show/hide
Query:  MHDKYRQNPMAKTIIVGNLLKPLNSKYGKVAPGWGTTPLMGVTMDL
        + D  R  P + T  VG LLKPLNS+YGKVAPGWGTTPLMGV M L
Subjt:  MHDKYRQNPMAKTIIVGNLLKPLNSKYGKVAPGWGTTPLMGVTMDL


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGAAAAGATTCTTCAAGGGTCTCAGGTCCTCGAGATGCATGATAAATACCGCCAAAACCCAATGGCCAAGACAATTATTGTTGGGAATTTATTGAAACCATTGAATTC
AAAATATGGTAAAGTGGCTCCTGGGTGGGGAACTACGCCTTTGATGGGTGTCACGATGGATCTATGCGACATTCCTATCTATTATTTTGGAGATTTATAA
mRNA sequenceShow/hide mRNA sequence
ATGGAAAAGATTCTTCAAGGGTCTCAGGTCCTCGAGATGCATGATAAATACCGCCAAAACCCAATGGCCAAGACAATTATTGTTGGGAATTTATTGAAACCATTGAATTC
AAAATATGGTAAAGTGGCTCCTGGGTGGGGAACTACGCCTTTGATGGGTGTCACGATGGATCTATGCGACATTCCTATCTATTATTTTGGAGATTTATAA
Protein sequenceShow/hide protein sequence
MEKILQGSQVLEMHDKYRQNPMAKTIIVGNLLKPLNSKYGKVAPGWGTTPLMGVTMDLCDIPIYYFGDL