; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

CmoCh12G010050 (gene) of Cucurbita moschata (Rifu) v1 genome

Gene IDCmoCh12G010050
OrganismCucurbita moschata Rifu (Cucurbita moschata (Rifu) v1)
Descriptiontranscription factor IBH1-like 1
Genome locationCmo_Chr12:9411423..9411893
RNA-Seq ExpressionCmoCh12G010050
SyntenyCmoCh12G010050
Gene Ontology termsGO:0006355 - regulation of transcription, DNA-templated (biological process)
GO:0110165 - cellular anatomical structure (cellular component)
GO:0005488 - binding (molecular function)
InterPro domainsIPR044549 - Transcription factor IBH1-like, bHLH domain
IPR044660 - Transcription factor IBH1-like


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG6586187.1 Transcription factor IBH1-like 1, partial [Cucurbita argyrosperma subsp. sororia]9.1e-7598.1Show/hide
Query:  MPNPINLKQIFIKKWIMGLNPITFSNTNMNFLERKNAIKAASDLAMAATRNGATHWSRAIIAKSIQAPPEAKLRRKTMLRKIARKVARSRTHL--SRSRS
        MPNPINLKQIFIKKWIMGLNPITFSNTNMNFLERKNAIKAASDLAMAATRNGATHWSRAIIAKSIQAPPEAKLRRKT LRKIARKVARSRTHL  SRSRS
Subjt:  MPNPINLKQIFIKKWIMGLNPITFSNTNMNFLERKNAIKAASDLAMAATRNGATHWSRAIIAKSIQAPPEAKLRRKTMLRKIARKVARSRTHL--SRSRS

Query:  VARSVAKRLVHKRTKLLRSLVPGGEFMKDEALLIDEALDYISFLRVQVDGMRFLADCK
        VARSVAKRLVHKRTKLLRSLVPGGEFMKDEALLIDEALDYISFLRVQVDGMRFLADCK
Subjt:  VARSVAKRLVHKRTKLLRSLVPGGEFMKDEALLIDEALDYISFLRVQVDGMRFLADCK

KAG7021018.1 Transcription factor IBH1-like 1, partial [Cucurbita argyrosperma subsp. argyrosperma]1.5e-6497.89Show/hide
Query:  MGLNPITFSNTNMNFLERKNAIKAASDLAMAATRNGATHWSRAIIAKSIQAPPEAKLRRKTMLRKIARKVARSRTHL--SRSRSVARSVAKRLVHKRTKL
        MGLNPITFSNTNMNFLERKNAIKAASDLAMAATRNGATHWSRAIIAKSIQAPPEAKLRRKT LRKIARKVARSRTHL  SRSRSVARSVAKRLVHKRTKL
Subjt:  MGLNPITFSNTNMNFLERKNAIKAASDLAMAATRNGATHWSRAIIAKSIQAPPEAKLRRKTMLRKIARKVARSRTHL--SRSRSVARSVAKRLVHKRTKL

Query:  LRSLVPGGEFMKDEALLIDEALDYISFLRVQVDGMRFLADCK
        LRSLVPGGEFMKDEALLIDEALDYISFLRVQVDGMRFLADCK
Subjt:  LRSLVPGGEFMKDEALLIDEALDYISFLRVQVDGMRFLADCK

XP_022938061.1 transcription factor IBH1-like 1 [Cucurbita moschata]5.7e-77100Show/hide
Query:  MPNPINLKQIFIKKWIMGLNPITFSNTNMNFLERKNAIKAASDLAMAATRNGATHWSRAIIAKSIQAPPEAKLRRKTMLRKIARKVARSRTHLSRSRSVA
        MPNPINLKQIFIKKWIMGLNPITFSNTNMNFLERKNAIKAASDLAMAATRNGATHWSRAIIAKSIQAPPEAKLRRKTMLRKIARKVARSRTHLSRSRSVA
Subjt:  MPNPINLKQIFIKKWIMGLNPITFSNTNMNFLERKNAIKAASDLAMAATRNGATHWSRAIIAKSIQAPPEAKLRRKTMLRKIARKVARSRTHLSRSRSVA

Query:  RSVAKRLVHKRTKLLRSLVPGGEFMKDEALLIDEALDYISFLRVQVDGMRFLADCK
        RSVAKRLVHKRTKLLRSLVPGGEFMKDEALLIDEALDYISFLRVQVDGMRFLADCK
Subjt:  RSVAKRLVHKRTKLLRSLVPGGEFMKDEALLIDEALDYISFLRVQVDGMRFLADCK

XP_022965992.1 transcription factor IBH1-like 1 [Cucurbita maxima]2.0e-6688.46Show/hide
Query:  MPNPINLKQIFIKKWIMGLNPITFSNTNMNFLERKNAIKAASDLAMAATRNGATHWSRAIIAKSIQAPPEAKLRRKTMLRKIARKVARSRTHLSRSRSVA
        MPNPINLK+IF+KKWIMGLNPITFSNT MNFLERK AIKA+SDLAMAATRNGAT WSRAIIAKSIQAP EAKLRRKT L KI RK+AR  TH SRSRSVA
Subjt:  MPNPINLKQIFIKKWIMGLNPITFSNTNMNFLERKNAIKAASDLAMAATRNGATHWSRAIIAKSIQAPPEAKLRRKTMLRKIARKVARSRTHLSRSRSVA

Query:  RSVAKRLVHKRTKLLRSLVPGGEFMKDEALLIDEALDYISFLRVQVDGMRFLADCK
        RSVAKRLV KRTK+LRSLVPGGEFM+DEALLIDEALDYISFLRVQVDGMRFLA+CK
Subjt:  RSVAKRLVHKRTKLLRSLVPGGEFMKDEALLIDEALDYISFLRVQVDGMRFLADCK

XP_023537774.1 transcription factor IBH1-like 1 [Cucurbita pepo subsp. pepo]8.5e-7395.51Show/hide
Query:  MPNPINLKQIFIKKWIMGLNPITFSNTNMNFLERKNAIKAASDLAMAATRNGATHWSRAIIAKSIQAPPEAKLRRKTMLRKIARKVARSRTHLSRSRSVA
        MPNPINLKQIFIKKWIMGLNPITFSNTNMNFLERKNAIKAASDLAMA TRNGAT WSRAIIAKSIQAPPEAKLRRKTMLRKI RKVAR  TH SRSRSVA
Subjt:  MPNPINLKQIFIKKWIMGLNPITFSNTNMNFLERKNAIKAASDLAMAATRNGATHWSRAIIAKSIQAPPEAKLRRKTMLRKIARKVARSRTHLSRSRSVA

Query:  RSVAKRLVHKRTKLLRSLVPGGEFMKDEALLIDEALDYISFLRVQVDGMRFLADCK
        RSVAKRLVHKRTKLLRSLVPGGEFMKDEALLIDEALDYISFLRVQVDGMRFLA+CK
Subjt:  RSVAKRLVHKRTKLLRSLVPGGEFMKDEALLIDEALDYISFLRVQVDGMRFLADCK

TrEMBL top hitse value%identityAlignment
A0A0A0LM92 Uncharacterized protein1.5e-3856.5Show/hide
Query:  MPNPINLKQIFIKKWIMGLNPITFSN-TNMNFLERKNAIKAASDLAMAATRNGATHWSRAIIAKSIQ--APPEA-------------KLRRKTMLRKIAR
        MPNP  LKQ F+KKW++GL   T S+ TNMNFL+RK AIK ++D AMA TR G T WS++IIAKS++  APP+A             K R  T L+K+ R
Subjt:  MPNPINLKQIFIKKWIMGLNPITFSN-TNMNFLERKNAIKAASDLAMAATRNGATHWSRAIIAKSIQ--APPEA-------------KLRRKTMLRKIAR

Query:  KVAR---SRTHLSRSRSVARSVAKRLVHKRTKLLRSLVPGGEFMKDEALLIDEALDYISFLRVQVDGMRFLAD--CK
        K+ R    R+ L  S+ + R++AKRLV KRTK+LRSL+PGGEFM+DE LLI+EALDYI FL+ QVDGMRFLA+  CK
Subjt:  KVAR---SRTHLSRSRSVARSVAKRLVHKRTKLLRSLVPGGEFMKDEALLIDEALDYISFLRVQVDGMRFLAD--CK

A0A1S3BT01 uncharacterized protein LOC1034933951.6e-4059.09Show/hide
Query:  MPNPINLKQIFIKKWIMGLNPITFSNTNMNFLERKNAIKAASDLAMAATRNGATHWSRAIIAKSIQ--APPEAKLRRKT-----------------MLRK
        MPN   LKQ F+K W++GL   T S TNMNFL+RK AIK ++D AMAATRNG T WS++IIAK ++  APPEA L R+T                 M RK
Subjt:  MPNPINLKQIFIKKWIMGLNPITFSNTNMNFLERKNAIKAASDLAMAATRNGATHWSRAIIAKSIQ--APPEAKLRRKT-----------------MLRK

Query:  IARKVARSRTHLSRSRSVARSVAKRLVHKRTKLLRSLVPGGEFMKDEALLIDEALDYISFLRVQVDGMRFLAD-CK
        I RK+AR R+ L  S+++  ++AKRLV KRTK+LRSL+PGGEFMKDEALLI+EALDYI FL+ QVDGMRFLA+ CK
Subjt:  IARKVARSRTHLSRSRSVARSVAKRLVHKRTKLLRSLVPGGEFMKDEALLIDEALDYISFLRVQVDGMRFLAD-CK

A0A5D3CK75 Transcription factor IBH12.2e-4260.23Show/hide
Query:  MPNPINLKQIFIKKWIMGLNPITFSNTNMNFLERKNAIKAASDLAMAATRNGATHWSRAIIAKSIQ--APPEAKLRRKT-----------------MLRK
        MPNP  LKQ F+K W++GL   T S TNMNFL+RK AIK ++D AMAATRNG T WS++IIAKS++  APPEA L R+T                 M RK
Subjt:  MPNPINLKQIFIKKWIMGLNPITFSNTNMNFLERKNAIKAASDLAMAATRNGATHWSRAIIAKSIQ--APPEAKLRRKT-----------------MLRK

Query:  IARKVARSRTHLSRSRSVARSVAKRLVHKRTKLLRSLVPGGEFMKDEALLIDEALDYISFLRVQVDGMRFLAD-CK
        I RK+AR R+ L  S+++  ++AKRLV KRTK+LRSL+PGGEFMKDEALLI+EALDYI FL+ QVDGMRFLA+ CK
Subjt:  IARKVARSRTHLSRSRSVARSVAKRLVHKRTKLLRSLVPGGEFMKDEALLIDEALDYISFLRVQVDGMRFLAD-CK

A0A6J1FC37 transcription factor IBH1-like 12.8e-77100Show/hide
Query:  MPNPINLKQIFIKKWIMGLNPITFSNTNMNFLERKNAIKAASDLAMAATRNGATHWSRAIIAKSIQAPPEAKLRRKTMLRKIARKVARSRTHLSRSRSVA
        MPNPINLKQIFIKKWIMGLNPITFSNTNMNFLERKNAIKAASDLAMAATRNGATHWSRAIIAKSIQAPPEAKLRRKTMLRKIARKVARSRTHLSRSRSVA
Subjt:  MPNPINLKQIFIKKWIMGLNPITFSNTNMNFLERKNAIKAASDLAMAATRNGATHWSRAIIAKSIQAPPEAKLRRKTMLRKIARKVARSRTHLSRSRSVA

Query:  RSVAKRLVHKRTKLLRSLVPGGEFMKDEALLIDEALDYISFLRVQVDGMRFLADCK
        RSVAKRLVHKRTKLLRSLVPGGEFMKDEALLIDEALDYISFLRVQVDGMRFLADCK
Subjt:  RSVAKRLVHKRTKLLRSLVPGGEFMKDEALLIDEALDYISFLRVQVDGMRFLADCK

A0A6J1HLT3 transcription factor IBH1-like 19.8e-6788.46Show/hide
Query:  MPNPINLKQIFIKKWIMGLNPITFSNTNMNFLERKNAIKAASDLAMAATRNGATHWSRAIIAKSIQAPPEAKLRRKTMLRKIARKVARSRTHLSRSRSVA
        MPNPINLK+IF+KKWIMGLNPITFSNT MNFLERK AIKA+SDLAMAATRNGAT WSRAIIAKSIQAP EAKLRRKT L KI RK+AR  TH SRSRSVA
Subjt:  MPNPINLKQIFIKKWIMGLNPITFSNTNMNFLERKNAIKAASDLAMAATRNGATHWSRAIIAKSIQAPPEAKLRRKTMLRKIARKVARSRTHLSRSRSVA

Query:  RSVAKRLVHKRTKLLRSLVPGGEFMKDEALLIDEALDYISFLRVQVDGMRFLADCK
        RSVAKRLV KRTK+LRSLVPGGEFM+DEALLIDEALDYISFLRVQVDGMRFLA+CK
Subjt:  RSVAKRLVHKRTKLLRSLVPGGEFMKDEALLIDEALDYISFLRVQVDGMRFLADCK

SwissProt top hitse value%identityAlignment
O80482 Transcription factor bHLH1491.0e-0431.61Show/hide
Query:  LKQIFIKKWIMGLNPI-----TFSNTNMNFLERKNA--IKAASDLAMAATRNGATHWSRAIIAKSIQAPPEAKLRRKTMLRKIARKVARSRTHLSRSRSV
        ++QI+  K +  L  +     T SN   + L    A  I+  +D  +AA+  G T WSRAI+A  ++    AKL++    +K      +SR  L+ +  +
Subjt:  LKQIFIKKWIMGLNPI-----TFSNTNMNFLERKNA--IKAASDLAMAATRNGATHWSRAIIAKSIQAPPEAKLRRKTMLRKIARKVARSRTHLSRSRSV

Query:  ARSVAKRLVHKRTKLLRSLVPGGEFMKDEALLIDEALDYISFLRVQVDGMRFLAD
                V ++ K+L  LVPG   +    LL DEA DYI+ L +QV  M  LA+
Subjt:  ARSVAKRLVHKRTKLLRSLVPGGEFMKDEALLIDEALDYISFLRVQVDGMRFLAD

Q9C8Z9 Transcription factor bHLH1482.7e-0533.09Show/hide
Query:  LNPITFSNTNMNFLERKNAIKAASDLAMAATRNGATHWSRAIIAKSIQAPPEAKLR-RKTMLRKIARKVARSRTHLSRSR--SVARSVAKRL--VHKRTK
        LN    ++++    +R  A++ A+D A+A +  G T WSRAI+A  I+     + R R TM       V  S ++ SR R  SV R   K +  V+++ +
Subjt:  LNPITFSNTNMNFLERKNAIKAASDLAMAATRNGATHWSRAIIAKSIQAPPEAKLR-RKTMLRKIARKVARSRTHLSRSR--SVARSVAKRL--VHKRTK

Query:  LLRSLVPGGEFMKDEALLIDEALDYISFLRVQVDGMRFL
        +L  LVPG    +   ++++EA DYI  L +QV  M  L
Subjt:  LLRSLVPGGEFMKDEALLIDEALDYISFLRVQVDGMRFL

Q9M0B9 Transcription factor IBH1-like 11.5e-1941.92Show/hide
Query:  NLKQIFIKKWIMGLNPITFSNTNMNFLERKNAIKAASDLAMAATRNGATHWSRAIIAKS--------------IQAPP--EAKLRRKTML-RKIARKVAR
        ++ + F+KKW MGL     S  N +  ERK AIK ++D+AMA+ R G T WSRA+I K+              I+A      KL +KT+  RKI R+  +
Subjt:  NLKQIFIKKWIMGLNPITFSNTNMNFLERKNAIKAASDLAMAATRNGATHWSRAIIAKS--------------IQAPP--EAKLRRKTML-RKIARKVAR

Query:  SRTHLSRSRS-VARSVAKRLVHKRTKLLRSLVPGGEFMKDEALLIDEALDYISFLRVQVDGMRFLAD
             S+S S  A + AKRLV +RT+ LR++VPGGE M ++ LL+ E LDYI  L+ QV+ MR + D
Subjt:  SRTHLSRSRS-VARSVAKRLVHKRTKLLRSLVPGGEFMKDEALLIDEALDYISFLRVQVDGMRFLAD

Arabidopsis top hitse value%identityAlignment
AT3G06590.1 basic helix-loop-helix (bHLH) DNA-binding superfamily protein1.9e-0633.09Show/hide
Query:  LNPITFSNTNMNFLERKNAIKAASDLAMAATRNGATHWSRAIIAKSIQAPPEAKLR-RKTMLRKIARKVARSRTHLSRSR--SVARSVAKRL--VHKRTK
        LN    ++++    +R  A++ A+D A+A +  G T WSRAI+A  I+     + R R TM       V  S ++ SR R  SV R   K +  V+++ +
Subjt:  LNPITFSNTNMNFLERKNAIKAASDLAMAATRNGATHWSRAIIAKSIQAPPEAKLR-RKTMLRKIARKVARSRTHLSRSR--SVARSVAKRL--VHKRTK

Query:  LLRSLVPGGEFMKDEALLIDEALDYISFLRVQVDGMRFL
        +L  LVPG    +   ++++EA DYI  L +QV  M  L
Subjt:  LLRSLVPGGEFMKDEALLIDEALDYISFLRVQVDGMRFL

AT3G06590.2 basic helix-loop-helix (bHLH) DNA-binding superfamily protein1.9e-0633.09Show/hide
Query:  LNPITFSNTNMNFLERKNAIKAASDLAMAATRNGATHWSRAIIAKSIQAPPEAKLR-RKTMLRKIARKVARSRTHLSRSR--SVARSVAKRL--VHKRTK
        LN    ++++    +R  A++ A+D A+A +  G T WSRAI+A  I+     + R R TM       V  S ++ SR R  SV R   K +  V+++ +
Subjt:  LNPITFSNTNMNFLERKNAIKAASDLAMAATRNGATHWSRAIIAKSIQAPPEAKLR-RKTMLRKIARKVARSRTHLSRSR--SVARSVAKRL--VHKRTK

Query:  LLRSLVPGGEFMKDEALLIDEALDYISFLRVQVDGMRFL
        +L  LVPG    +   ++++EA DYI  L +QV  M  L
Subjt:  LLRSLVPGGEFMKDEALLIDEALDYISFLRVQVDGMRFL

AT4G30410.1 sequence-specific DNA binding transcription factors1.1e-2041.92Show/hide
Query:  NLKQIFIKKWIMGLNPITFSNTNMNFLERKNAIKAASDLAMAATRNGATHWSRAIIAKS--------------IQAPP--EAKLRRKTML-RKIARKVAR
        ++ + F+KKW MGL     S  N +  ERK AIK ++D+AMA+ R G T WSRA+I K+              I+A      KL +KT+  RKI R+  +
Subjt:  NLKQIFIKKWIMGLNPITFSNTNMNFLERKNAIKAASDLAMAATRNGATHWSRAIIAKS--------------IQAPP--EAKLRRKTML-RKIARKVAR

Query:  SRTHLSRSRS-VARSVAKRLVHKRTKLLRSLVPGGEFMKDEALLIDEALDYISFLRVQVDGMRFLAD
             S+S S  A + AKRLV +RT+ LR++VPGGE M ++ LL+ E LDYI  L+ QV+ MR + D
Subjt:  SRTHLSRSRS-VARSVAKRLVHKRTKLLRSLVPGGEFMKDEALLIDEALDYISFLRVQVDGMRFLAD

AT4G30410.2 sequence-specific DNA binding transcription factors1.1e-2041.92Show/hide
Query:  NLKQIFIKKWIMGLNPITFSNTNMNFLERKNAIKAASDLAMAATRNGATHWSRAIIAKS--------------IQAPP--EAKLRRKTML-RKIARKVAR
        ++ + F+KKW MGL     S  N +  ERK AIK ++D+AMA+ R G T WSRA+I K+              I+A      KL +KT+  RKI R+  +
Subjt:  NLKQIFIKKWIMGLNPITFSNTNMNFLERKNAIKAASDLAMAATRNGATHWSRAIIAKS--------------IQAPP--EAKLRRKTML-RKIARKVAR

Query:  SRTHLSRSRS-VARSVAKRLVHKRTKLLRSLVPGGEFMKDEALLIDEALDYISFLRVQVDGMRFLAD
             S+S S  A + AKRLV +RT+ LR++VPGGE M ++ LL+ E LDYI  L+ QV+ MR + D
Subjt:  SRTHLSRSRS-VARSVAKRLVHKRTKLLRSLVPGGEFMKDEALLIDEALDYISFLRVQVDGMRFLAD

AT5G57780.1 EXPRESSED IN: 18 plant structures1.6e-2448.72Show/hide
Query:  MPNPINL-KQIFIKKWIMGLNPITFSNTN-MNFLERKNAIKAASDLAMAATRNGATHWSRAIIAKSIQAPPEAKLRRKTMLRKIARKVA-RSRTHLSRSR
        M N  N+ KQ FIKKWI  L+ +  S  + +N  ERKNAI+ +SDLAMAA RNG+T WSRA+I++S       K   K M R+I +K   R +   +  R
Subjt:  MPNPINL-KQIFIKKWIMGLNPITFSNTN-MNFLERKNAIKAASDLAMAATRNGATHWSRAIIAKSIQAPPEAKLRRKTMLRKIARKVA-RSRTHLSRSR

Query:  SVARSVAKRLVHKRTKLLRSLVPGGEFMKDEALLIDEALDYISFLRVQVDGMRFLA
              AK  V KRT LL+SLVPGGE + D+  LI E LDYI +LR QVD MR +A
Subjt:  SVARSVAKRLVHKRTKLLRSLVPGGEFMKDEALLIDEALDYISFLRVQVDGMRFLA


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGCCCAACCCCATCAACCTCAAACAAATTTTCATCAAGAAATGGATCATGGGTCTAAACCCCATCACCTTCTCAAACACAAACATGAACTTCTTAGAGAGAAAA
AACGCCATAAAAGCAGCCTCCGACTTGGCCATGGCTGCAACGAGAAACGGAGCGACTCATTGGAGTCGAGCCATCATTGCCAAATCTATACAAGCTCCACCTGAG
GCCAAGCTTCGAAGGAAGACGATGCTACGTAAGATTGCTCGAAAAGTGGCTAGGAGTCGCACGCACCTGTCGAGGTCGAGGTCCGTAGCGAGATCAGTTGCTAAG
AGATTGGTTCATAAAAGGACCAAACTTCTAAGGAGTTTGGTTCCTGGGGGAGAGTTTATGAAGGATGAAGCTTTGTTGATTGATGAAGCCCTAGATTACATATCA
TTTCTTCGAGTTCAAGTTGATGGAATGCGGTTTCTTGCTGATTGCAAATGA
mRNA sequenceShow/hide mRNA sequence
ATGCCCAACCCCATCAACCTCAAACAAATTTTCATCAAGAAATGGATCATGGGTCTAAACCCCATCACCTTCTCAAACACAAACATGAACTTCTTAGAGAGAAAA
AACGCCATAAAAGCAGCCTCCGACTTGGCCATGGCTGCAACGAGAAACGGAGCGACTCATTGGAGTCGAGCCATCATTGCCAAATCTATACAAGCTCCACCTGAG
GCCAAGCTTCGAAGGAAGACGATGCTACGTAAGATTGCTCGAAAAGTGGCTAGGAGTCGCACGCACCTGTCGAGGTCGAGGTCCGTAGCGAGATCAGTTGCTAAG
AGATTGGTTCATAAAAGGACCAAACTTCTAAGGAGTTTGGTTCCTGGGGGAGAGTTTATGAAGGATGAAGCTTTGTTGATTGATGAAGCCCTAGATTACATATCA
TTTCTTCGAGTTCAAGTTGATGGAATGCGGTTTCTTGCTGATTGCAAATGA
Protein sequenceShow/hide protein sequence
MPNPINLKQIFIKKWIMGLNPITFSNTNMNFLERKNAIKAASDLAMAATRNGATHWSRAIIAKSIQAPPEAKLRRKTMLRKIARKVARSRTHLSRSRSVARSVAK
RLVHKRTKLLRSLVPGGEFMKDEALLIDEALDYISFLRVQVDGMRFLADCK