; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

CmoCh12G011250 (gene) of Cucurbita moschata (Rifu) v1 genome

Gene IDCmoCh12G011250
OrganismCucurbita moschata Rifu (Cucurbita moschata (Rifu) v1)
Description40S ribosomal protein S24
Genome locationCmo_Chr12:10264913..10266422
RNA-Seq ExpressionCmoCh12G011250
SyntenyCmoCh12G011250
Gene Ontology termsGO:0006412 - translation (biological process)
GO:0005829 - cytosol (cellular component)
GO:0005840 - ribosome (cellular component)
GO:0003729 - mRNA binding (molecular function)
GO:0003735 - structural constituent of ribosome (molecular function)
InterPro domainsIPR001976 - Ribosomal protein S24e
IPR012678 - Ribosomal protein L23/L15e core domain superfamily
IPR018098 - Ribosomal S24e conserved site


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_004139219.1 40S ribosomal protein S24-1 [Cucumis sativus]1.6e-6386.62Show/hide
Query:  MADKAVTIRTRKFMTNRLLSRKQFVIDVLHPGRPNVSKAELKEKLGRIYDVKDPNAIFVFKFRTHFGGGKSTGFGLIYDSVENAKKYEPKYRLIRNGLDT
        MADKAVTIRTRKFMTNRLLSRKQFVIDVLHPGRPNVSKAELKEKLGRIYDVKDPNAIFVFKFRTHFGGGKSTGFGLIYDSVENAKKYEPKYRLIRNGLDT
Subjt:  MADKAVTIRTRKFMTNRLLSRKQFVIDVLHPGRPNVSKAELKEKLGRIYDVKDPNAIFVFKFRTHFGGGKSTGFGLIYDSVENAKKYEPKYRLIRNGLDT

Query:  KVEKSRKQMKERKNRAKKIRGVKKSTRSRMMKHYYLPLVDVFLQTKASDAAKAGKKK
        KVEKSRKQMKERKNRAKKIRGVKK                    TKASDAAK GKKK
Subjt:  KVEKSRKQMKERKNRAKKIRGVKKSTRSRMMKHYYLPLVDVFLQTKASDAAKAGKKK

XP_008455742.1 PREDICTED: 40S ribosomal protein S24-1 [Cucumis melo]3.6e-6385.99Show/hide
Query:  MADKAVTIRTRKFMTNRLLSRKQFVIDVLHPGRPNVSKAELKEKLGRIYDVKDPNAIFVFKFRTHFGGGKSTGFGLIYDSVENAKKYEPKYRLIRNGLDT
        MADKAVTIRTRKFMTNRLLSRKQF+IDVLHPGRPNVSKAELKEKL RIYDVKDPNAIFVFKFRTHFGGGKSTGFGLIYDSVENAKKYEPKYRLIRNGLDT
Subjt:  MADKAVTIRTRKFMTNRLLSRKQFVIDVLHPGRPNVSKAELKEKLGRIYDVKDPNAIFVFKFRTHFGGGKSTGFGLIYDSVENAKKYEPKYRLIRNGLDT

Query:  KVEKSRKQMKERKNRAKKIRGVKKSTRSRMMKHYYLPLVDVFLQTKASDAAKAGKKK
        KVEKSRKQMKERKNRAKKIRGVKK                    TKASDAAKAGKKK
Subjt:  KVEKSRKQMKERKNRAKKIRGVKKSTRSRMMKHYYLPLVDVFLQTKASDAAKAGKKK

XP_022143165.1 40S ribosomal protein S24-1 [Momordica charantia]2.8e-6386.62Show/hide
Query:  MADKAVTIRTRKFMTNRLLSRKQFVIDVLHPGRPNVSKAELKEKLGRIYDVKDPNAIFVFKFRTHFGGGKSTGFGLIYDSVENAKKYEPKYRLIRNGLDT
        MADKAVTIRTRKFMTNRLLSRKQFVIDVLHPGRPNVSKAELKEKL RIYDVKDPNAIFVFKFRTHFGGGKSTGFGLIYDSVENAKKYEPKYRLIRNGLDT
Subjt:  MADKAVTIRTRKFMTNRLLSRKQFVIDVLHPGRPNVSKAELKEKLGRIYDVKDPNAIFVFKFRTHFGGGKSTGFGLIYDSVENAKKYEPKYRLIRNGLDT

Query:  KVEKSRKQMKERKNRAKKIRGVKKSTRSRMMKHYYLPLVDVFLQTKASDAAKAGKKK
        KVEKSRKQMKERKNRAKKIRGVKK                    TKASDAAKAGKKK
Subjt:  KVEKSRKQMKERKNRAKKIRGVKKSTRSRMMKHYYLPLVDVFLQTKASDAAKAGKKK

XP_022937688.1 40S ribosomal protein S24-1-like [Cucurbita moschata]5.6e-6487.26Show/hide
Query:  MADKAVTIRTRKFMTNRLLSRKQFVIDVLHPGRPNVSKAELKEKLGRIYDVKDPNAIFVFKFRTHFGGGKSTGFGLIYDSVENAKKYEPKYRLIRNGLDT
        MADKAVTIRTRKFMTNRLLSRKQFVIDVLHPGRPNVSKAELKEKLGRIYDVKDPNAIFVFKFRTHFGGGKSTGFGLIYDSVENAKKYEPKYRLIRNGLDT
Subjt:  MADKAVTIRTRKFMTNRLLSRKQFVIDVLHPGRPNVSKAELKEKLGRIYDVKDPNAIFVFKFRTHFGGGKSTGFGLIYDSVENAKKYEPKYRLIRNGLDT

Query:  KVEKSRKQMKERKNRAKKIRGVKKSTRSRMMKHYYLPLVDVFLQTKASDAAKAGKKK
        KVEKSRKQMKERKNRAKKIRGVKK                    TKASDAAKAGKKK
Subjt:  KVEKSRKQMKERKNRAKKIRGVKKSTRSRMMKHYYLPLVDVFLQTKASDAAKAGKKK

XP_022999263.1 40S ribosomal protein S24-1-like [Cucurbita maxima]2.8e-6385.99Show/hide
Query:  MADKAVTIRTRKFMTNRLLSRKQFVIDVLHPGRPNVSKAELKEKLGRIYDVKDPNAIFVFKFRTHFGGGKSTGFGLIYDSVENAKKYEPKYRLIRNGLDT
        MADKAVTIRTRKFMTNRLLSRKQFVIDVLHPGRPNVSKAELKEKLGRIYDVKDPN+IFVFKFRTHFGGGKSTGFGLIYDSVENAKKYEPKYRLIRNGLDT
Subjt:  MADKAVTIRTRKFMTNRLLSRKQFVIDVLHPGRPNVSKAELKEKLGRIYDVKDPNAIFVFKFRTHFGGGKSTGFGLIYDSVENAKKYEPKYRLIRNGLDT

Query:  KVEKSRKQMKERKNRAKKIRGVKKSTRSRMMKHYYLPLVDVFLQTKASDAAKAGKKK
        KVEKSRKQMKERKNRAKKIRGVKK                    TKASD+AKAGKKK
Subjt:  KVEKSRKQMKERKNRAKKIRGVKKSTRSRMMKHYYLPLVDVFLQTKASDAAKAGKKK

TrEMBL top hitse value%identityAlignment
A0A0A0LFK1 40S ribosomal protein S247.8e-6486.62Show/hide
Query:  MADKAVTIRTRKFMTNRLLSRKQFVIDVLHPGRPNVSKAELKEKLGRIYDVKDPNAIFVFKFRTHFGGGKSTGFGLIYDSVENAKKYEPKYRLIRNGLDT
        MADKAVTIRTRKFMTNRLLSRKQFVIDVLHPGRPNVSKAELKEKLGRIYDVKDPNAIFVFKFRTHFGGGKSTGFGLIYDSVENAKKYEPKYRLIRNGLDT
Subjt:  MADKAVTIRTRKFMTNRLLSRKQFVIDVLHPGRPNVSKAELKEKLGRIYDVKDPNAIFVFKFRTHFGGGKSTGFGLIYDSVENAKKYEPKYRLIRNGLDT

Query:  KVEKSRKQMKERKNRAKKIRGVKKSTRSRMMKHYYLPLVDVFLQTKASDAAKAGKKK
        KVEKSRKQMKERKNRAKKIRGVKK                    TKASDAAK GKKK
Subjt:  KVEKSRKQMKERKNRAKKIRGVKKSTRSRMMKHYYLPLVDVFLQTKASDAAKAGKKK

A0A6J1CN14 40S ribosomal protein S241.3e-6386.62Show/hide
Query:  MADKAVTIRTRKFMTNRLLSRKQFVIDVLHPGRPNVSKAELKEKLGRIYDVKDPNAIFVFKFRTHFGGGKSTGFGLIYDSVENAKKYEPKYRLIRNGLDT
        MADKAVTIRTRKFMTNRLLSRKQFVIDVLHPGRPNVSKAELKEKL RIYDVKDPNAIFVFKFRTHFGGGKSTGFGLIYDSVENAKKYEPKYRLIRNGLDT
Subjt:  MADKAVTIRTRKFMTNRLLSRKQFVIDVLHPGRPNVSKAELKEKLGRIYDVKDPNAIFVFKFRTHFGGGKSTGFGLIYDSVENAKKYEPKYRLIRNGLDT

Query:  KVEKSRKQMKERKNRAKKIRGVKKSTRSRMMKHYYLPLVDVFLQTKASDAAKAGKKK
        KVEKSRKQMKERKNRAKKIRGVKK                    TKASDAAKAGKKK
Subjt:  KVEKSRKQMKERKNRAKKIRGVKKSTRSRMMKHYYLPLVDVFLQTKASDAAKAGKKK

A0A6J1FGN1 40S ribosomal protein S242.7e-6487.26Show/hide
Query:  MADKAVTIRTRKFMTNRLLSRKQFVIDVLHPGRPNVSKAELKEKLGRIYDVKDPNAIFVFKFRTHFGGGKSTGFGLIYDSVENAKKYEPKYRLIRNGLDT
        MADKAVTIRTRKFMTNRLLSRKQFVIDVLHPGRPNVSKAELKEKLGRIYDVKDPNAIFVFKFRTHFGGGKSTGFGLIYDSVENAKKYEPKYRLIRNGLDT
Subjt:  MADKAVTIRTRKFMTNRLLSRKQFVIDVLHPGRPNVSKAELKEKLGRIYDVKDPNAIFVFKFRTHFGGGKSTGFGLIYDSVENAKKYEPKYRLIRNGLDT

Query:  KVEKSRKQMKERKNRAKKIRGVKKSTRSRMMKHYYLPLVDVFLQTKASDAAKAGKKK
        KVEKSRKQMKERKNRAKKIRGVKK                    TKASDAAKAGKKK
Subjt:  KVEKSRKQMKERKNRAKKIRGVKKSTRSRMMKHYYLPLVDVFLQTKASDAAKAGKKK

A0A6J1HN66 40S ribosomal protein S242.7e-6487.26Show/hide
Query:  MADKAVTIRTRKFMTNRLLSRKQFVIDVLHPGRPNVSKAELKEKLGRIYDVKDPNAIFVFKFRTHFGGGKSTGFGLIYDSVENAKKYEPKYRLIRNGLDT
        MADKAVTIRTRKFMTNRLLSRKQFVIDVLHPGRPNVSKAELKEKLGRIYDVKDPNAIFVFKFRTHFGGGKSTGFGLIYDSVENAKKYEPKYRLIRNGLDT
Subjt:  MADKAVTIRTRKFMTNRLLSRKQFVIDVLHPGRPNVSKAELKEKLGRIYDVKDPNAIFVFKFRTHFGGGKSTGFGLIYDSVENAKKYEPKYRLIRNGLDT

Query:  KVEKSRKQMKERKNRAKKIRGVKKSTRSRMMKHYYLPLVDVFLQTKASDAAKAGKKK
        KVEKSRKQMKERKNRAKKIRGVKK                    TKASDAAKAGKKK
Subjt:  KVEKSRKQMKERKNRAKKIRGVKKSTRSRMMKHYYLPLVDVFLQTKASDAAKAGKKK

A0A6J1KJ42 40S ribosomal protein S241.3e-6385.99Show/hide
Query:  MADKAVTIRTRKFMTNRLLSRKQFVIDVLHPGRPNVSKAELKEKLGRIYDVKDPNAIFVFKFRTHFGGGKSTGFGLIYDSVENAKKYEPKYRLIRNGLDT
        MADKAVTIRTRKFMTNRLLSRKQFVIDVLHPGRPNVSKAELKEKLGRIYDVKDPN+IFVFKFRTHFGGGKSTGFGLIYDSVENAKKYEPKYRLIRNGLDT
Subjt:  MADKAVTIRTRKFMTNRLLSRKQFVIDVLHPGRPNVSKAELKEKLGRIYDVKDPNAIFVFKFRTHFGGGKSTGFGLIYDSVENAKKYEPKYRLIRNGLDT

Query:  KVEKSRKQMKERKNRAKKIRGVKKSTRSRMMKHYYLPLVDVFLQTKASDAAKAGKKK
        KVEKSRKQMKERKNRAKKIRGVKK                    TKASD+AKAGKKK
Subjt:  KVEKSRKQMKERKNRAKKIRGVKKSTRSRMMKHYYLPLVDVFLQTKASDAAKAGKKK

SwissProt top hitse value%identityAlignment
P62847 40S ribosomal protein S241.2e-3767.5Show/hide
Query:  VTIRTRKFMTNRLLSRKQFVIDVLHPGRPNVSKAELKEKLGRIYDVKDPNAIFVFKFRTHFGGGKSTGFGLIYDSVENAKKYEPKYRLIRNGLDTKVEKS
        VTIRTRKFMTNRLL RKQ VIDVLHPG+  V K E++EKL ++Y    P+ IFVF FRTHFGGGK+TGFG+IYDS++ AKK EPK+RL R+GL  K + S
Subjt:  VTIRTRKFMTNRLLSRKQFVIDVLHPGRPNVSKAELKEKLGRIYDVKDPNAIFVFKFRTHFGGGKSTGFGLIYDSVENAKKYEPKYRLIRNGLDTKVEKS

Query:  RKQMKERKNRAKKIRGVKKS
        RKQ KERKNR KK+RG  K+
Subjt:  RKQMKERKNRAKKIRGVKKS

Q56JU9 40S ribosomal protein S241.2e-3767.5Show/hide
Query:  VTIRTRKFMTNRLLSRKQFVIDVLHPGRPNVSKAELKEKLGRIYDVKDPNAIFVFKFRTHFGGGKSTGFGLIYDSVENAKKYEPKYRLIRNGLDTKVEKS
        VTIRTRKFMTNRLL RKQ VIDVLHPG+  V K E++EKL ++Y    P+ IFVF FRTHFGGGK+TGFG+IYDS++ AKK EPK+RL R+GL  K + S
Subjt:  VTIRTRKFMTNRLLSRKQFVIDVLHPGRPNVSKAELKEKLGRIYDVKDPNAIFVFKFRTHFGGGKSTGFGLIYDSVENAKKYEPKYRLIRNGLDTKVEKS

Query:  RKQMKERKNRAKKIRGVKKS
        RKQ KERKNR KK+RG  K+
Subjt:  RKQMKERKNRAKKIRGVKKS

Q8LC83 40S ribosomal protein S24-25.2e-5788Show/hide
Query:  MADKAVTIRTRKFMTNRLLSRKQFVIDVLHPGRPNVSKAELKEKLGRIYDVKDPNAIFVFKFRTHFGGGKSTGFGLIYDSVENAKKYEPKYRLIRNGLDT
        MA+KAVTIRTR FMTNRLL+RKQFVIDVLHPGR NVSKAELKEKL R+Y+VKDPNAIF FKFRTHFGGGKS+G+GLIYD+VENAKK+EPKYRLIRNGLDT
Subjt:  MADKAVTIRTRKFMTNRLLSRKQFVIDVLHPGRPNVSKAELKEKLGRIYDVKDPNAIFVFKFRTHFGGGKSTGFGLIYDSVENAKKYEPKYRLIRNGLDT

Query:  KVEKSRKQMKERKNRAKKIRGVKKS
        K+EKSRKQ+KERKNRAKKIRGVKK+
Subjt:  KVEKSRKQMKERKNRAKKIRGVKKS

Q962Q6 40S ribosomal protein S241.4e-3864.8Show/hide
Query:  MADKAVTIRTRKFMTNRLLSRKQFVIDVLHPGRPNVSKAELKEKLGRIYDVKDPNAIFVFKFRTHFGGGKSTGFGLIYDSVENAKKYEPKYRLIRNGLDT
        M +   TIRTRKFMTNRLL+RKQ V DVLHPG+P VSK E++EKL ++Y V  P+ +FVF F+T+FGGGKSTGF LIYD+++ AKK+EPK+RL R+GL  
Subjt:  MADKAVTIRTRKFMTNRLLSRKQFVIDVLHPGRPNVSKAELKEKLGRIYDVKDPNAIFVFKFRTHFGGGKSTGFGLIYDSVENAKKYEPKYRLIRNGLDT

Query:  KVEKSRKQMKERKNRAKKIRGVKKS
        K   +RKQ KERKNR KK+RG KKS
Subjt:  KVEKSRKQMKERKNRAKKIRGVKKS

Q9SS17 40S ribosomal protein S24-12.8e-5890.4Show/hide
Query:  MADKAVTIRTRKFMTNRLLSRKQFVIDVLHPGRPNVSKAELKEKLGRIYDVKDPNAIFVFKFRTHFGGGKSTGFGLIYDSVENAKKYEPKYRLIRNGLDT
        MA+KAVTIRTRKFMTNRLLSRKQFVIDVLHPGR NVSKAELKEKL R+Y+VKDPNAIFVFKFRTHFGGGKS+GFGLIYD+VE+AKK+EPKYRLIRNGLDT
Subjt:  MADKAVTIRTRKFMTNRLLSRKQFVIDVLHPGRPNVSKAELKEKLGRIYDVKDPNAIFVFKFRTHFGGGKSTGFGLIYDSVENAKKYEPKYRLIRNGLDT

Query:  KVEKSRKQMKERKNRAKKIRGVKKS
        K+EKSRKQ+KERKNRAKKIRGVKK+
Subjt:  KVEKSRKQMKERKNRAKKIRGVKKS

Arabidopsis top hitse value%identityAlignment
AT3G04920.1 Ribosomal protein S24e family protein2.0e-5990.4Show/hide
Query:  MADKAVTIRTRKFMTNRLLSRKQFVIDVLHPGRPNVSKAELKEKLGRIYDVKDPNAIFVFKFRTHFGGGKSTGFGLIYDSVENAKKYEPKYRLIRNGLDT
        MA+KAVTIRTRKFMTNRLLSRKQFVIDVLHPGR NVSKAELKEKL R+Y+VKDPNAIFVFKFRTHFGGGKS+GFGLIYD+VE+AKK+EPKYRLIRNGLDT
Subjt:  MADKAVTIRTRKFMTNRLLSRKQFVIDVLHPGRPNVSKAELKEKLGRIYDVKDPNAIFVFKFRTHFGGGKSTGFGLIYDSVENAKKYEPKYRLIRNGLDT

Query:  KVEKSRKQMKERKNRAKKIRGVKKS
        K+EKSRKQ+KERKNRAKKIRGVKK+
Subjt:  KVEKSRKQMKERKNRAKKIRGVKKS

AT5G28060.1 Ribosomal protein S24e family protein3.7e-5888Show/hide
Query:  MADKAVTIRTRKFMTNRLLSRKQFVIDVLHPGRPNVSKAELKEKLGRIYDVKDPNAIFVFKFRTHFGGGKSTGFGLIYDSVENAKKYEPKYRLIRNGLDT
        MA+KAVTIRTR FMTNRLL+RKQFVIDVLHPGR NVSKAELKEKL R+Y+VKDPNAIF FKFRTHFGGGKS+G+GLIYD+VENAKK+EPKYRLIRNGLDT
Subjt:  MADKAVTIRTRKFMTNRLLSRKQFVIDVLHPGRPNVSKAELKEKLGRIYDVKDPNAIFVFKFRTHFGGGKSTGFGLIYDSVENAKKYEPKYRLIRNGLDT

Query:  KVEKSRKQMKERKNRAKKIRGVKKS
        K+EKSRKQ+KERKNRAKKIRGVKK+
Subjt:  KVEKSRKQMKERKNRAKKIRGVKKS


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGCGGACAAGGCAGTCACTATCCGGACCAGGAAGTTCATGACCAACAGGCTCCTCTCCAGGAAGCAATTCGTCATTGATGTTCTTCACCCAGGCAGACCCAAT
GTCTCAAAGGCTGAGCTAAAGGAGAAGTTGGGCAGAATCTACGACGTGAAAGACCCAAATGCCATCTTTGTTTTCAAGTTCAGAACTCACTTTGGTGGTGGAAAA
TCTACCGGGTTCGGTTTGATCTATGACTCTGTTGAGAATGCCAAGAAGTATGAGCCAAAGTACAGGCTGATCAGGAATGGACTCGACACCAAGGTAGAGAAGTCA
AGAAAGCAAATGAAGGAAAGGAAGAACAGGGCCAAGAAAATCCGTGGAGTTAAGAAGTCGACGAGATCTCGAATGATGAAACATTACTATTTACCACTGGTTGAT
GTCTTTTTACAGACCAAGGCTTCAGATGCTGCCAAGGCAGGAAAGAAGAAATGA
mRNA sequenceShow/hide mRNA sequence
GTTTTGCCATCCAGTCTTTTTATCATCCCGACTCAGGTTAAGAGCTGCCGTTTCTCTGCGCCTTCGCCCTTCCAAGAGCTTCAAGCTTTCCATCCTCTTTGGGGC
ACATCCAGTCATGGCGGACAAGGCAGTCACTATCCGGACCAGGAAGTTCATGACCAACAGGCTCCTCTCCAGGAAGCAATTCGTCATTGATGTTCTTCACCCAGG
CAGACCCAATGTCTCAAAGGCTGAGCTAAAGGAGAAGTTGGGCAGAATCTACGACGTGAAAGACCCAAATGCCATCTTTGTTTTCAAGTTCAGAACTCACTTTGG
TGGTGGAAAATCTACCGGGTTCGGTTTGATCTATGACTCTGTTGAGAATGCCAAGAAGTATGAGCCAAAGTACAGGCTGATCAGGAATGGACTCGACACCAAGGT
AGAGAAGTCAAGAAAGCAAATGAAGGAAAGGAAGAACAGGGCCAAGAAAATCCGTGGAGTTAAGAAGTCGACGAGATCTCGAATGATGAAACATTACTATTTACC
ACTGGTTGATGTCTTTTTACAGACCAAGGCTTCAGATGCTGCCAAGGCAGGAAAGAAGAAATGA
Protein sequenceShow/hide protein sequence
MADKAVTIRTRKFMTNRLLSRKQFVIDVLHPGRPNVSKAELKEKLGRIYDVKDPNAIFVFKFRTHFGGGKSTGFGLIYDSVENAKKYEPKYRLIRNGLDTKVEKS
RKQMKERKNRAKKIRGVKKSTRSRMMKHYYLPLVDVFLQTKASDAAKAGKKK