CuGenDBv2

Gene ID	CmoCh12G011530
Organism	Cucurbita moschata Rifu (Cucurbita moschata (Rifu) v1)
Description	Alba domain-containing protein
Genome location	Cmo_Chr12:10446051..10447454
RNA-Seq Expression	CmoCh12G011530
Synteny	CmoCh12G011530
Gene Ontology terms	GO:0048235 - pollen sperm cell differentiation (biological process) GO:0005634 - nucleus (cellular component) GO:0003723 - RNA binding (molecular function)
InterPro domains	IPR002775 - DNA/RNA-binding protein Alba-like IPR014560 - Uncharacterised conserved protein UCP030333, DNA/RNA-binding Alba-related IPR036882 - Alba-like domain superfamily

Homology

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GenBank top hits

e value

%identity

Alignment

KAG6586319.1 hypothetical protein SDJN03_19052, partial [Cucurbita argyrosperma subsp. sororia]

1.4e-55

94.2

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Query:  MTTTIAVSRATETQKKNRIQVSNTKKPLFFYVNLAKRYIQQHNEVELSALGMAITTVVTIAEILKNNGLATEKKVLTSTVGMKDENKGRL-----IEIVL
        MTTTIAVS ATETQKKNRIQVSNTKKPLFFYVNLAKRYIQQHNEVELSALGMAITTVVTIAEILKNNGLATEKKVLTSTVGMKDENKGRL     IEIVL
Subjt:  MTTTIAVSRATETQKKNRIQVSNTKKPLFFYVNLAKRYIQQHNEVELSALGMAITTVVTIAEILKNNGLATEKKVLTSTVGMKDENKGRL-----IEIVL

Query:  GKSEKFDSLMTAATVAAEAAAGGREEKKKAGEESKEGQ
        GKSEKFDSLMTAATV AEAAAGG EEKKKAGEESKEGQ
Subjt:  GKSEKFDSLMTAATVAAEAAAGGREEKKKAGEESKEGQ

KAG7021166.1 hypothetical protein SDJN02_17854, partial [Cucurbita argyrosperma subsp. argyrosperma]

3.7e-53

93.23

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Query:  MTTTIAVSRATETQKKNRIQVSNTKKPLFFYVNLAKRYIQQHNEVELSALGMAITTVVTIAEILKNNGLATEKKVLTSTVGMKDENKGRLIEIVLGKSEK
        MTTTIAVS ATETQKKNRIQVSNTKKPLFFYVNLAKRYIQQHNEVELSALGMAITTVVTIAEILKNNGLATEKKVLTSTVGMKDENKGRL++    KSEK
Subjt:  MTTTIAVSRATETQKKNRIQVSNTKKPLFFYVNLAKRYIQQHNEVELSALGMAITTVVTIAEILKNNGLATEKKVLTSTVGMKDENKGRLIEIVLGKSEK

Query:  FDSLMTAATVAAEAAAGGREEKKKAGEESKEGQ
        FDSLMTAATV AEAAAGG EEKKKAGEESKEGQ
Subjt:  FDSLMTAATVAAEAAAGGREEKKKAGEESKEGQ

XP_022938043.1 uncharacterized protein At2g34160-like [Cucurbita moschata]

1.1e-57

96.38

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Query:  MTTTIAVSRATETQKKNRIQVSNTKKPLFFYVNLAKRYIQQHNEVELSALGMAITTVVTIAEILKNNGLATEKKVLTSTVGMKDENKGRL-----IEIVL
        MTTTIAVSRATETQKKNRIQVSNTKKPLFFYVNLAKRYIQQHNEVELSALGMAITTVVTIAEILKNNGLATEKKVLTSTVGMKDENKGRL     IEIVL
Subjt:  MTTTIAVSRATETQKKNRIQVSNTKKPLFFYVNLAKRYIQQHNEVELSALGMAITTVVTIAEILKNNGLATEKKVLTSTVGMKDENKGRL-----IEIVL

Query:  GKSEKFDSLMTAATVAAEAAAGGREEKKKAGEESKEGQ
        GKSEKFDSLMTAATVAAEAAAGGREEKKKAGEESKEGQ
Subjt:  GKSEKFDSLMTAATVAAEAAAGGREEKKKAGEESKEGQ

XP_022965411.1 uncharacterized protein At2g34160-like [Cucurbita maxima]

1.4e-55

94.2

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Query:  MTTTIAVSRATETQKKNRIQVSNTKKPLFFYVNLAKRYIQQHNEVELSALGMAITTVVTIAEILKNNGLATEKKVLTSTVGMKDENKGRL-----IEIVL
        MTTTIAVS ATETQKKNRIQVSNTKKPLFFYVNLAKRYIQQHNEVELSALGMAITTVVTIAEILKNNGLATEKKVLTSTVGMKDENKGRL     IEIVL
Subjt:  MTTTIAVSRATETQKKNRIQVSNTKKPLFFYVNLAKRYIQQHNEVELSALGMAITTVVTIAEILKNNGLATEKKVLTSTVGMKDENKGRL-----IEIVL

Query:  GKSEKFDSLMTAATVAAEAAAGGREEKKKAGEESKEGQ
        GKSEKFDSLMTAATVAAEA AGG EEKKKAGEESKEGQ
Subjt:  GKSEKFDSLMTAATVAAEAAAGGREEKKKAGEESKEGQ

XP_023537985.1 uncharacterized protein At2g34160-like [Cucurbita pepo subsp. pepo]

3.4e-54

93.53

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Query:  MTTTIAVSRATETQKKNRIQVSNTKKPLFFYVNLAKRYIQQHNEVELSALGMAITTVVTIAEILKNNGLATEKKVLTSTVGMKDENKGRL-----IEIVL
        MTTTIAVS ATETQKKNRIQVSNTKKPLFFYVNLAKRYIQQHNEVELSALGMAITTVVTIAEILKNNGLATEKKVLTSTVGMKDENKGRL     IEIVL
Subjt:  MTTTIAVSRATETQKKNRIQVSNTKKPLFFYVNLAKRYIQQHNEVELSALGMAITTVVTIAEILKNNGLATEKKVLTSTVGMKDENKGRL-----IEIVL

Query:  GKSEKFDSL-MTAATVAAEAAAGGREEKKKAGEESKEGQ
        GKSEKFDSL MTAATVA EAAAGG EEKKKAGEESKEGQ
Subjt:  GKSEKFDSL-MTAATVAAEAAAGGREEKKKAGEESKEGQ

TrEMBL top hits

e value

%identity

Alignment

A0A0A0LG69 Alba domain-containing protein

2.4e-45

83.33

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Query:  MTTTIAVS---RATETQKKNRIQVSNTKKPLFFYVNLAKRYIQQHNEVELSALGMAITTVVTIAEILKNNGLATEKKVLTSTVGMKDENKGRL-----IE
        M  TIAVS    ATETQKKNRIQVSNTKKPLFFYVNLAKRYIQQHNEVELSALGMAITTVVTIAEILKNNGLATEKKVLTSTVGMKDENKGRL     IE
Subjt:  MTTTIAVS---RATETQKKNRIQVSNTKKPLFFYVNLAKRYIQQHNEVELSALGMAITTVVTIAEILKNNGLATEKKVLTSTVGMKDENKGRL-----IE

Query:  IVLGKSEKFDSLMTAATVAAE---AAAGGREEKKKAGEESKEGQ
        IVLGKSEKFDSLMTAAT   E   A A   EE+KKA EESKE Q
Subjt:  IVLGKSEKFDSLMTAATVAAE---AAAGGREEKKKAGEESKEGQ

A0A5D3D4G4 Alba DNA/RNA-binding protein

9.0e-45

83.1

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Query:  TIAVS---RATETQKKNRIQVSNTKKPLFFYVNLAKRYIQQHNEVELSALGMAITTVVTIAEILKNNGLATEKKVLTSTVGMKDENKGRL-----IEIVL
        TIAVS    ATETQKKNRIQVSNTKKPLFFYVNLAKRYIQQHNEVELSALGMAITTVVTIAEILKNNGLATEKKVLTSTVGMKDENKGRL     IEIVL
Subjt:  TIAVS---RATETQKKNRIQVSNTKKPLFFYVNLAKRYIQQHNEVELSALGMAITTVVTIAEILKNNGLATEKKVLTSTVGMKDENKGRL-----IEIVL

Query:  GKSEKFDSLMTAATVAAE----AAAGGREEKKKAGEESKEGQ
        GKSEKFDSLMTAAT   E     AA G EEKK   EE+KE Q
Subjt:  GKSEKFDSLMTAATVAAE----AAAGGREEKKKAGEESKEGQ

A0A6J1CQ10 uncharacterized protein At2g34160

1.6e-46

88.72

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Query:  TIAVSRATETQKKNRIQVSNTKKPLFFYVNLAKRYIQQHNEVELSALGMAITTVVTIAEILKNNGLATEKKVLTSTVGMKDENKGRL-----IEIVLGKS
        TIAVS ATETQKKNRIQVSNTKKPLFFYVNLAKRYIQQHNEVELSALGMAITTVVTIAEILKNNGLATEKKVLTSTVGMKDENKGRL     IEIVLGKS
Subjt:  TIAVSRATETQKKNRIQVSNTKKPLFFYVNLAKRYIQQHNEVELSALGMAITTVVTIAEILKNNGLATEKKVLTSTVGMKDENKGRL-----IEIVLGKS

Query:  EKFDSLMTAATVAAEAAAGGREEKKKAGEESKE
        EKFDSLMTAAT AA  AA   EEKK   EESKE
Subjt:  EKFDSLMTAATVAAEAAAGGREEKKKAGEESKE

A0A6J1FHQ7 uncharacterized protein At2g34160-like

5.4e-58

96.38

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Query:  MTTTIAVSRATETQKKNRIQVSNTKKPLFFYVNLAKRYIQQHNEVELSALGMAITTVVTIAEILKNNGLATEKKVLTSTVGMKDENKGRL-----IEIVL
        MTTTIAVSRATETQKKNRIQVSNTKKPLFFYVNLAKRYIQQHNEVELSALGMAITTVVTIAEILKNNGLATEKKVLTSTVGMKDENKGRL     IEIVL
Subjt:  MTTTIAVSRATETQKKNRIQVSNTKKPLFFYVNLAKRYIQQHNEVELSALGMAITTVVTIAEILKNNGLATEKKVLTSTVGMKDENKGRL-----IEIVL

Query:  GKSEKFDSLMTAATVAAEAAAGGREEKKKAGEESKEGQ
        GKSEKFDSLMTAATVAAEAAAGGREEKKKAGEESKEGQ
Subjt:  GKSEKFDSLMTAATVAAEAAAGGREEKKKAGEESKEGQ

A0A6J1HLL6 uncharacterized protein At2g34160-like

6.6e-56

94.2

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Query:  MTTTIAVSRATETQKKNRIQVSNTKKPLFFYVNLAKRYIQQHNEVELSALGMAITTVVTIAEILKNNGLATEKKVLTSTVGMKDENKGRL-----IEIVL
        MTTTIAVS ATETQKKNRIQVSNTKKPLFFYVNLAKRYIQQHNEVELSALGMAITTVVTIAEILKNNGLATEKKVLTSTVGMKDENKGRL     IEIVL
Subjt:  MTTTIAVSRATETQKKNRIQVSNTKKPLFFYVNLAKRYIQQHNEVELSALGMAITTVVTIAEILKNNGLATEKKVLTSTVGMKDENKGRL-----IEIVL

Query:  GKSEKFDSLMTAATVAAEAAAGGREEKKKAGEESKEGQ
        GKSEKFDSLMTAATVAAEA AGG EEKKKAGEESKEGQ
Subjt:  GKSEKFDSLMTAATVAAEAAAGGREEKKKAGEESKEGQ

SwissProt top hits

e value

%identity

Alignment

O22969 Uncharacterized protein At2g34160

1.5e-33

71.17

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Query:  ATETQKKNRIQVSNTKKPLFFYVNLAKRYIQQHNEVELSALGMAITTVVTIAEILKNNGLATEKKVLTSTVGMKDENKGR-----LIEIVLGKSEKFDSL
        AT++QKKNRIQVSNTKKPLFFYVNLAKRY+QQ+N+VELSALGMAI TVVT+ EILKNNG A EKK++TSTV +KD+ +GR      IEI L KSEKFD L
Subjt:  ATETQKKNRIQVSNTKKPLFFYVNLAKRYIQQHNEVELSALGMAITTVVTIAEILKNNGLATEKKVLTSTVGMKDENKGR-----LIEIVLGKSEKFDSL

Query:  MTAATVAAEAA
        M AA    E A
Subjt:  MTAATVAAEAA

Arabidopsis top hits

e value

%identity

Alignment

AT1G29250.1 Alba DNA/RNA-binding protein

9.9e-36

72.07

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Query:  ATETQKKNRIQVSNTKKPLFFYVNLAKRYIQQHNEVELSALGMAITTVVTIAEILKNNGLATEKKVLTSTVGMKDENKGR-----LIEIVLGKSEKFDSL
        A +TQKKNRIQVSNTKKPLFFYVNLAKRY+QQ+ +VELSALGMAI TVVT+AEILKNNG A EKK++TSTV +KD+++GR      IEI L KSEKFD L
Subjt:  ATETQKKNRIQVSNTKKPLFFYVNLAKRYIQQHNEVELSALGMAITTVVTIAEILKNNGLATEKKVLTSTVGMKDENKGR-----LIEIVLGKSEKFDSL

Query:  MTAATVAAEAA
        M AA    EAA
Subjt:  MTAATVAAEAA

AT2G34160.1 Alba DNA/RNA-binding protein

1.1e-34

71.17

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Query:  ATETQKKNRIQVSNTKKPLFFYVNLAKRYIQQHNEVELSALGMAITTVVTIAEILKNNGLATEKKVLTSTVGMKDENKGR-----LIEIVLGKSEKFDSL
        AT++QKKNRIQVSNTKKPLFFYVNLAKRY+QQ+N+VELSALGMAI TVVT+ EILKNNG A EKK++TSTV +KD+ +GR      IEI L KSEKFD L
Subjt:  ATETQKKNRIQVSNTKKPLFFYVNLAKRYIQQHNEVELSALGMAITTVVTIAEILKNNGLATEKKVLTSTVGMKDENKGR-----LIEIVLGKSEKFDSL

Query:  MTAATVAAEAA
        M AA    E A
Subjt:  MTAATVAAEAA

AT3G04620.1 Alba DNA/RNA-binding protein

1.5e-39

71.43

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Query:  TIAVSRATETQKKNRIQVSNTKKPLFFYVNLAKRYIQQHNEVELSALGMAITTVVTIAEILKNNGLATEKKVLTSTVGMKDENKGRL-----IEIVLGKS
        T   +   ET KKNRIQVSNTKKPLFFYVNLAKRYIQQHNEVELSALGMAITTVVTI+EILKNNGLATEKKVLTSTVGMKDE KG++     IEIVLGKS
Subjt:  TIAVSRATETQKKNRIQVSNTKKPLFFYVNLAKRYIQQHNEVELSALGMAITTVVTIAEILKNNGLATEKKVLTSTVGMKDENKGRL-----IEIVLGKS

Query:  EKFDSLMTAAT---VAAEAAAGGREEKKKAGEE
        +KFDSL+   T      E A+   E   +A EE
Subjt:  EKFDSLMTAAT---VAAEAAAGGREEKKKAGEE

Sequences

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CDS sequence

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ATGACGACGACGATTGCGGTATCGAGAGCTACTGAAACACAGAAGAAGAATAGAATTCAGGTTTCGAATACCAAGAAACCACTCTTCTTCTACGTTAATCTTGCTAAGAG
GTACATTCAACAGCACAATGAGGTTGAACTATCTGCATTGGGAATGGCAATCACTACCGTTGTCACAATTGCAGAGATTCTAAAGAACAATGGATTGGCTACCGAGAAGA
AAGTTTTGACTTCTACGGTCGGCATGAAGGATGAGAACAAAGGTCGTTTGATTGAGATTGTTCTGGGAAAGTCGGAGAAATTTGATTCTCTGATGACTGCGGCCACGGTA
GCAGCGGAGGCGGCAGCGGGAGGCCGCGAGGAGAAAAAAAAGGCAGGAGAGGAAAGCAAGGAGGGGCAGTAG

mRNA sequence

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Protein sequence

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MTTTIAVSRATETQKKNRIQVSNTKKPLFFYVNLAKRYIQQHNEVELSALGMAITTVVTIAEILKNNGLATEKKVLTSTVGMKDENKGRLIEIVLGKSEKFDSLMTAATV
AAEAAAGGREEKKKAGEESKEGQ

CmoCh12G011530 (gene) of Cucurbita moschata (Rifu) v1 genome