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CmoCh12G011610 (gene) of Cucurbita moschata (Rifu) v1 genome

Gene IDCmoCh12G011610
OrganismCucurbita moschata Rifu (Cucurbita moschata (Rifu) v1)
DescriptionVQ domain-containing protein
Genome locationCmo_Chr12:10509784..10510161
RNA-Seq ExpressionCmoCh12G011610
SyntenyCmoCh12G011610
Gene Ontology termsGO:0051091 - positive regulation of DNA-binding transcription factor activity (biological process)
InterPro domainsIPR008889 - VQ
IPR039335 - Sigma factor binding protein 1/2


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0063579.1 VQ motif-containing protein [Cucumis melo var. makuwa]8.4e-2353.1Show/hide
Query:  MENL-KSLPNHLRHEKLEASNYRAT---MANKPIKVKYISSPMMVKANNEFEFRAIVQKLTGQHSAD-DA-FDRSPQEFNHAFCPP----SSTVTSFDSK
        MENL  +LP    H K+  ++ + T     NKPIKVKYISSPMMVKANNE EFRAIVQKLTGQHS D DA FD+S Q+FNHAF PP    S+   SFD +
Subjt:  MENL-KSLPNHLRHEKLEASNYRAT---MANKPIKVKYISSPMMVKANNEFEFRAIVQKLTGQHSAD-DA-FDRSPQEFNHAFCPP----SSTVTSFDSK

Query:  DCYDLVSSDAYDPIGV----------GEMKDSLYGFQA-SYVDVW
        DCY   S D      +          GEM+ S  GFQA S V++W
Subjt:  DCYDLVSSDAYDPIGV----------GEMKDSLYGFQA-SYVDVW

KAE8651551.1 hypothetical protein Csa_019210 [Cucumis sativus]5.5e-2252.48Show/hide
Query:  MENLKSLPNHLRHEKLEASNYRATM--ANKPIKVKYISSPMMVKANNEFEFRAIVQKLTGQHSADDAFDRSPQEFNHAFCPP---SSTVTSFDSKDCY--
        MEN  +LP++  H+K+   + +AT+   NKPIKVKYISSPMMVKANNE EFRAIVQKLTGQHS D   D+S Q+FNH F PP   SS   SFD KDCY  
Subjt:  MENLKSLPNHLRHEKLEASNYRATM--ANKPIKVKYISSPMMVKANNEFEFRAIVQKLTGQHSADDAFDRSPQEFNHAFCPP---SSTVTSFDSKDCY--

Query:  --------DLVSSDAYDPIGVGEMK-DSLYGFQA-SYVDVW
                D +          GEM+  S  GFQA S V++W
Subjt:  --------DLVSSDAYDPIGVGEMK-DSLYGFQA-SYVDVW

KAG6586326.1 Sigma factor binding protein 1, chloroplastic, partial [Cucurbita argyrosperma subsp. sororia]2.2e-6398.4Show/hide
Query:  MENLKSLPNHLRHEKLEASNYRATMANKPIKVKYISSPMMVKANNEFEFRAIVQKLTGQHSADDAFDRSPQEFNHAFCPPSSTVTSFDSKDCYDLVSSDA
        MENLKSLPNHLRHEKLEASNYRATMANKPIKVKYISSPMMVKA+NEFEFRAIVQKLTGQHSADDAFDRSPQEFNHAFCPPSSTVTSFDSKDCYDLVSSDA
Subjt:  MENLKSLPNHLRHEKLEASNYRATMANKPIKVKYISSPMMVKANNEFEFRAIVQKLTGQHSADDAFDRSPQEFNHAFCPPSSTVTSFDSKDCYDLVSSDA

Query:  YDPIGVGEMKDSLYGFQASYVDVWR
        YDPI VGEMKDSLYGFQASYVDVWR
Subjt:  YDPIGVGEMKDSLYGFQASYVDVWR

XP_022938305.1 sigma factor binding protein 1, chloroplastic-like [Cucurbita moschata]6.8e-65100Show/hide
Query:  MENLKSLPNHLRHEKLEASNYRATMANKPIKVKYISSPMMVKANNEFEFRAIVQKLTGQHSADDAFDRSPQEFNHAFCPPSSTVTSFDSKDCYDLVSSDA
        MENLKSLPNHLRHEKLEASNYRATMANKPIKVKYISSPMMVKANNEFEFRAIVQKLTGQHSADDAFDRSPQEFNHAFCPPSSTVTSFDSKDCYDLVSSDA
Subjt:  MENLKSLPNHLRHEKLEASNYRATMANKPIKVKYISSPMMVKANNEFEFRAIVQKLTGQHSADDAFDRSPQEFNHAFCPPSSTVTSFDSKDCYDLVSSDA

Query:  YDPIGVGEMKDSLYGFQASYVDVWR
        YDPIGVGEMKDSLYGFQASYVDVWR
Subjt:  YDPIGVGEMKDSLYGFQASYVDVWR

XP_038877668.1 sigma factor binding protein 1, chloroplastic-like [Benincasa hispida]1.9e-2264.71Show/hide
Query:  NKPIKVKYISSPMMVKANNEFEFRAIVQKLTGQHSADDAFDRSPQEFNHAFCPPSSTVT--SFDSKDCYDLVSSDA-YDPIGVGEMKDSLYGFQA-SYVD
        NKPIKVKYISSPMMVKANNE EFRAIVQKLTGQHS  DAFD+S ++FN  F PP S++   SFD KDCY   S D  +D    GEM+ S  GFQA S V+
Subjt:  NKPIKVKYISSPMMVKANNEFEFRAIVQKLTGQHSADDAFDRSPQEFNHAFCPPSSTVT--SFDSKDCYDLVSSDA-YDPIGVGEMKDSLYGFQA-SYVD

Query:  VW
         W
Subjt:  VW

TrEMBL top hitse value%identityAlignment
A0A0A0LFF9 VQ domain-containing protein2.6e-2252.48Show/hide
Query:  MENLKSLPNHLRHEKLEASNYRATM--ANKPIKVKYISSPMMVKANNEFEFRAIVQKLTGQHSADDAFDRSPQEFNHAFCPP---SSTVTSFDSKDCY--
        MEN  +LP++  H+K+   + +AT+   NKPIKVKYISSPMMVKANNE EFRAIVQKLTGQHS D   D+S Q+FNH F PP   SS   SFD KDCY  
Subjt:  MENLKSLPNHLRHEKLEASNYRATM--ANKPIKVKYISSPMMVKANNEFEFRAIVQKLTGQHSADDAFDRSPQEFNHAFCPP---SSTVTSFDSKDCY--

Query:  --------DLVSSDAYDPIGVGEMK-DSLYGFQA-SYVDVW
                D +          GEM+  S  GFQA S V++W
Subjt:  --------DLVSSDAYDPIGVGEMK-DSLYGFQA-SYVDVW

A0A5A7VDH6 VQ motif-containing protein4.1e-2353.1Show/hide
Query:  MENL-KSLPNHLRHEKLEASNYRAT---MANKPIKVKYISSPMMVKANNEFEFRAIVQKLTGQHSAD-DA-FDRSPQEFNHAFCPP----SSTVTSFDSK
        MENL  +LP    H K+  ++ + T     NKPIKVKYISSPMMVKANNE EFRAIVQKLTGQHS D DA FD+S Q+FNHAF PP    S+   SFD +
Subjt:  MENL-KSLPNHLRHEKLEASNYRAT---MANKPIKVKYISSPMMVKANNEFEFRAIVQKLTGQHSAD-DA-FDRSPQEFNHAFCPP----SSTVTSFDSK

Query:  DCYDLVSSDAYDPIGV----------GEMKDSLYGFQA-SYVDVW
        DCY   S D      +          GEM+ S  GFQA S V++W
Subjt:  DCYDLVSSDAYDPIGV----------GEMKDSLYGFQA-SYVDVW

A0A6J1CME4 sigma factor binding protein 1, chloroplastic-like7.0e-1551.35Show/hide
Query:  KPIKVKYISSPMMVKANNEFEFRAIVQKLTGQHSADDAFDR----SPQEFNHAFC-PPSSTVTSFDSKDCYDLVSSDAYDPIGVGEMKDSLY--------
        KPIKVKYIS+PMMVKAN+E EFR IVQ+LTGQ+S DDAF+       +E NHAF  PP ST  S D K  Y LVS        VGE+ +  +        
Subjt:  KPIKVKYISSPMMVKANNEFEFRAIVQKLTGQHSADDAFDR----SPQEFNHAFC-PPSSTVTSFDSKDCYDLVSSDAYDPIGVGEMKDSLY--------

Query:  -GFQASYVDVW
         GFQAS V+ +
Subjt:  -GFQASYVDVW

A0A6J1FJE0 sigma factor binding protein 1, chloroplastic-like3.3e-65100Show/hide
Query:  MENLKSLPNHLRHEKLEASNYRATMANKPIKVKYISSPMMVKANNEFEFRAIVQKLTGQHSADDAFDRSPQEFNHAFCPPSSTVTSFDSKDCYDLVSSDA
        MENLKSLPNHLRHEKLEASNYRATMANKPIKVKYISSPMMVKANNEFEFRAIVQKLTGQHSADDAFDRSPQEFNHAFCPPSSTVTSFDSKDCYDLVSSDA
Subjt:  MENLKSLPNHLRHEKLEASNYRATMANKPIKVKYISSPMMVKANNEFEFRAIVQKLTGQHSADDAFDRSPQEFNHAFCPPSSTVTSFDSKDCYDLVSSDA

Query:  YDPIGVGEMKDSLYGFQASYVDVWR
        YDPIGVGEMKDSLYGFQASYVDVWR
Subjt:  YDPIGVGEMKDSLYGFQASYVDVWR

A0A7N2L612 VQ domain-containing protein3.1e-0755.38Show/hide
Query:  MENLKSLPNHLRHEKLEASNYRAT--MANKPIKVKYISSPMMVKANNEFEFRAIVQKLTGQHSAD
        ME  K   NH  HE+ +  N   T  +  +P+K+KYISSPM+VKA N  EFRAIVQ+LTGQHS D
Subjt:  MENLKSLPNHLRHEKLEASNYRAT--MANKPIKVKYISSPMMVKANNEFEFRAIVQKLTGQHSAD

SwissProt top hitse value%identityAlignment
O80669 Sigma factor binding protein 2, chloroplastic5.3e-0433.64Show/hide
Query:  RATMANKPIKVKYISSPMMVKANNEFEFRAIVQKLTGQHSADDAFDRSPQEFN----HAFCPPSSTVTSFDSKDCYDLVSSDAYDPI-----GVGEMKDS
        ++T  +KPIKV+YIS+PM V+     +FR +VQ+LTGQ +AD     SP  F     H  C     +   D +     V  + Y P+        +M   
Subjt:  RATMANKPIKVKYISSPMMVKANNEFEFRAIVQKLTGQHSADDAFDRSPQEFN----HAFCPPSSTVTSFDSKDCYDLVSSDAYDPI-----GVGEMKDS

Query:  LYGFQAS
        L GF +S
Subjt:  LYGFQAS

Q9LDH1 Sigma factor binding protein 1, chloroplastic2.8e-0535.16Show/hide
Query:  RATMANKPIKVKYISSPMMVKANNEFEFRAIVQKLTGQHSADDAFD--RSPQEFNHAFCPPSSTVT-SFDSKDCYDLVSSDAYDPIGVGEM
        + T  NKPIKV+YIS+PM V+     +FR +VQ+LTGQ + D   +   SP   +H   PP+  +      ++ +    SD Y+P+   +M
Subjt:  RATMANKPIKVKYISSPMMVKANNEFEFRAIVQKLTGQHSADDAFD--RSPQEFNHAFCPPSSTVT-SFDSKDCYDLVSSDAYDPIGVGEM

Arabidopsis top hitse value%identityAlignment
AT2G41180.1 VQ motif-containing protein3.8e-0533.64Show/hide
Query:  RATMANKPIKVKYISSPMMVKANNEFEFRAIVQKLTGQHSADDAFDRSPQEFN----HAFCPPSSTVTSFDSKDCYDLVSSDAYDPI-----GVGEMKDS
        ++T  +KPIKV+YIS+PM V+     +FR +VQ+LTGQ +AD     SP  F     H  C     +   D +     V  + Y P+        +M   
Subjt:  RATMANKPIKVKYISSPMMVKANNEFEFRAIVQKLTGQHSADDAFDRSPQEFN----HAFCPPSSTVTSFDSKDCYDLVSSDAYDPI-----GVGEMKDS

Query:  LYGFQAS
        L GF +S
Subjt:  LYGFQAS

AT3G56710.1 sigma factor binding protein 12.0e-0635.16Show/hide
Query:  RATMANKPIKVKYISSPMMVKANNEFEFRAIVQKLTGQHSADDAFD--RSPQEFNHAFCPPSSTVT-SFDSKDCYDLVSSDAYDPIGVGEM
        + T  NKPIKV+YIS+PM V+     +FR +VQ+LTGQ + D   +   SP   +H   PP+  +      ++ +    SD Y+P+   +M
Subjt:  RATMANKPIKVKYISSPMMVKANNEFEFRAIVQKLTGQHSADDAFD--RSPQEFNHAFCPPSSTVT-SFDSKDCYDLVSSDAYDPIGVGEM


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGAGAATCTTAAAAGCCTTCCTAATCATCTTCGTCACGAGAAACTCGAAGCTTCGAACTACCGAGCAACAATGGCGAACAAACCCATCAAAGTTAAGTACATTTCAAG
TCCCATGATGGTGAAGGCCAACAACGAGTTTGAGTTTCGAGCCATAGTTCAGAAGCTCACCGGCCAACACTCGGCCGATGATGCTTTTGATCGATCACCTCAAGAATTCA
ACCATGCTTTTTGTCCCCCGTCGTCTACGGTGACTTCTTTTGACTCGAAGGATTGTTATGATTTGGTTTCTAGTGATGCTTACGATCCGATCGGGGTCGGTGAAATGAAA
GATTCTTTATATGGGTTTCAAGCTTCTTATGTTGATGTATGGAGATGA
mRNA sequenceShow/hide mRNA sequence
ATGGAGAATCTTAAAAGCCTTCCTAATCATCTTCGTCACGAGAAACTCGAAGCTTCGAACTACCGAGCAACAATGGCGAACAAACCCATCAAAGTTAAGTACATTTCAAG
TCCCATGATGGTGAAGGCCAACAACGAGTTTGAGTTTCGAGCCATAGTTCAGAAGCTCACCGGCCAACACTCGGCCGATGATGCTTTTGATCGATCACCTCAAGAATTCA
ACCATGCTTTTTGTCCCCCGTCGTCTACGGTGACTTCTTTTGACTCGAAGGATTGTTATGATTTGGTTTCTAGTGATGCTTACGATCCGATCGGGGTCGGTGAAATGAAA
GATTCTTTATATGGGTTTCAAGCTTCTTATGTTGATGTATGGAGATGA
Protein sequenceShow/hide protein sequence
MENLKSLPNHLRHEKLEASNYRATMANKPIKVKYISSPMMVKANNEFEFRAIVQKLTGQHSADDAFDRSPQEFNHAFCPPSSTVTSFDSKDCYDLVSSDAYDPIGVGEMK
DSLYGFQASYVDVWR