CuGenDBv2

Gene ID	CmoCh12G011860
Organism	Cucurbita moschata Rifu (Cucurbita moschata (Rifu) v1)
Description	Interleukin-2 receptor subunit beta like
Genome location	Cmo_Chr12:10712079..10712564
RNA-Seq Expression	CmoCh12G011860
Synteny	CmoCh12G011860
Gene Ontology terms	NA
InterPro domains	NA

Homology

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GenBank top hits

e value

%identity

Alignment

KAG6586352.1 hypothetical protein SDJN03_19085, partial [Cucurbita argyrosperma subsp. sororia]

1.1e-83

99.38

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Query:  MDDSNEHKENASPSSLKAKIKSSLCLSCCLRRHRNGHHHLQRHQHQRRMSFSSDGDVPSPLTRCSSAKDKSRSRESPESKTDWRPHFISRLGRHSRRHSS
        MDDSNEHKENASPSSLKAKIKSSLCLSCCLRRHRNGHHHLQRHQHQRRMSFSSDG+VPSPLTRCSSAKDKSRSRESPESKTDWRPHFISRLGRHSRRHSS
Subjt:  MDDSNEHKENASPSSLKAKIKSSLCLSCCLRRHRNGHHHLQRHQHQRRMSFSSDGDVPSPLTRCSSAKDKSRSRESPESKTDWRPHFISRLGRHSRRHSS

Query:  ASVDFHYDALSYALNFDEGYDEGHVDDAFPLRNFSSRLPASPPKSAPSSTETSREMTTAYS
        ASVDFHYDALSYALNFDEGYDEGHVDDAFPLRNFSSRLPASPPKSAPSSTETSREMTTAYS
Subjt:  ASVDFHYDALSYALNFDEGYDEGHVDDAFPLRNFSSRLPASPPKSAPSSTETSREMTTAYS

XP_022938304.1 uncharacterized protein LOC111444439 [Cucurbita moschata]

3.8e-84

100

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Query:  MDDSNEHKENASPSSLKAKIKSSLCLSCCLRRHRNGHHHLQRHQHQRRMSFSSDGDVPSPLTRCSSAKDKSRSRESPESKTDWRPHFISRLGRHSRRHSS
        MDDSNEHKENASPSSLKAKIKSSLCLSCCLRRHRNGHHHLQRHQHQRRMSFSSDGDVPSPLTRCSSAKDKSRSRESPESKTDWRPHFISRLGRHSRRHSS
Subjt:  MDDSNEHKENASPSSLKAKIKSSLCLSCCLRRHRNGHHHLQRHQHQRRMSFSSDGDVPSPLTRCSSAKDKSRSRESPESKTDWRPHFISRLGRHSRRHSS

Query:  ASVDFHYDALSYALNFDEGYDEGHVDDAFPLRNFSSRLPASPPKSAPSSTETSREMTTAYS
        ASVDFHYDALSYALNFDEGYDEGHVDDAFPLRNFSSRLPASPPKSAPSSTETSREMTTAYS
Subjt:  ASVDFHYDALSYALNFDEGYDEGHVDDAFPLRNFSSRLPASPPKSAPSSTETSREMTTAYS

XP_022965990.1 uncharacterized protein LOC111465710 [Cucurbita maxima]

6.1e-82

97.52

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Query:  MDDSNEHKENASPSSLKAKIKSSLCLSCCLRRHRNGHHHLQRHQHQRRMSFSSDGDVPSPLTRCSSAKDKSRSRESPESKTDWRPHFISRLGRHSRRHSS
        MDDSNEHKENASPSSLKAKIKSSLCLSCCLRRHRNGHHHLQRHQHQRRMSFSSDGDVP+PLTRCSSAKDKSRSRESPESKTDWRPHFISRLG HSRRHSS
Subjt:  MDDSNEHKENASPSSLKAKIKSSLCLSCCLRRHRNGHHHLQRHQHQRRMSFSSDGDVPSPLTRCSSAKDKSRSRESPESKTDWRPHFISRLGRHSRRHSS

Query:  ASVDFHYDALSYALNFDEGYDEGHVDDAFPLRNFSSRLPASPPKSAPSSTETSREMTTAYS
        ASVDFHYDALSYALNFDEGYDEGHVDDAFPLRNFSSRLPASPPKS PSS+ETSREMTTAYS
Subjt:  ASVDFHYDALSYALNFDEGYDEGHVDDAFPLRNFSSRLPASPPKSAPSSTETSREMTTAYS

XP_023536962.1 uncharacterized protein LOC111798189 [Cucurbita pepo subsp. pepo]

4.2e-83

98.76

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Query:  MDDSNEHKENASPSSLKAKIKSSLCLSCCLRRHRNGHHHLQRHQHQRRMSFSSDGDVPSPLTRCSSAKDKSRSRESPESKTDWRPHFISRLGRHSRRHSS
        MDDSNEHKENASPSSLKAKIKSSLCLSCCLRRHRNGHHHLQRHQHQRRMSFSSDGDVPSPLTRCSSAKDKSRSRESPESK DWRPHFISRLGRHSRRHSS
Subjt:  MDDSNEHKENASPSSLKAKIKSSLCLSCCLRRHRNGHHHLQRHQHQRRMSFSSDGDVPSPLTRCSSAKDKSRSRESPESKTDWRPHFISRLGRHSRRHSS

Query:  ASVDFHYDALSYALNFDEGYDEGHVDDAFPLRNFSSRLPASPPKSAPSSTETSREMTTAYS
        ASVDFHYDALSYALNFDEGYDEGHVDDAFPLRNFSSRLPASPPKSAPSS+ETSREMTTAYS
Subjt:  ASVDFHYDALSYALNFDEGYDEGHVDDAFPLRNFSSRLPASPPKSAPSSTETSREMTTAYS

XP_038890730.1 homeobox protein MOX-2 [Benincasa hispida]

3.5e-61

80.86

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Query:  MDDSNEHKENASPSSLKAKIKSSLCLSCCLRRHRNG-HHHLQRHQHQRRMSFSSDGDVPSPLTRCSSAKDKSRSRESPESKTDWRPHFISRLGRHSRRHS
        MDDSNEHK N+SPSSLK  +KSSLCLSCCLR+HRNG HHH   H H RRMS SSDGD P PL RCSSAKDKSRSRESPE K D RPHFISRLGRH RRH 
Subjt:  MDDSNEHKENASPSSLKAKIKSSLCLSCCLRRHRNG-HHHLQRHQHQRRMSFSSDGDVPSPLTRCSSAKDKSRSRESPESKTDWRPHFISRLGRHSRRHS

Query:  SASVDFHYDALSYALNFDEGYDEGHVDDAFPLRNFSSRLPASPPKSAPSSTETSREMTTAYS
        SAS DF YDALSYALNFDEGYDEGHVDD FPLRNFSSRLPASP KS+PSS+  SREM TA+S
Subjt:  SASVDFHYDALSYALNFDEGYDEGHVDDAFPLRNFSSRLPASPPKSAPSSTETSREMTTAYS

TrEMBL top hits

e value

%identity

Alignment

A0A0A0LL60 Uncharacterized protein

1.9e-57

76.36

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Query:  MDDSNEHKENASPSSLKAKIKSSLCLSCCLRRHRNGHHHL---QRHQHQRRMSFSSDGD-VPSPLTRCSSAKDKSRSRESPESKTDWRPHFISRLGRHSR
        MDDSNEHK N+SPSSLK  +KSSLCLSCCLR+HRNGHHHL     H H+R MS SSDG+  P PL RCSSAKDKSRSRE  + K D  P FISRLGRH R
Subjt:  MDDSNEHKENASPSSLKAKIKSSLCLSCCLRRHRNGHHHL---QRHQHQRRMSFSSDGD-VPSPLTRCSSAKDKSRSRESPESKTDWRPHFISRLGRHSR

Query:  RHSSASVDFHYDALSYALNFDEGYDEGHVDDAFPLRNFSSRLPASPPKSAPSSTETSREMTTAYS
        RH SAS DFHYDALSY+LNFDEGYDEGHVDD FPLRNFSSRLPASPPKS+PS+T  SREM TA+S
Subjt:  RHSSASVDFHYDALSYALNFDEGYDEGHVDDAFPLRNFSSRLPASPPKSAPSSTETSREMTTAYS

A0A1S3CDF1 uncharacterized protein LOC103499607

3.0e-58

75.45

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Query:  MDDSNEHKENASPSSLKAKIKSSLCLSCCLRRHRNGHHHLQRHQ------HQRRMSFSSDGDVPSPLTRCSSAKDKSRSRESPESKTDWRPHFISRLGRH
        MDDSNEHK N+S S+LK  +KSSLCLSCCLR+HRNGHHHL  H       H RRMS SSDGD P PLTRCSSAKDKSRSRE  + K D  P+FISRLGRH
Subjt:  MDDSNEHKENASPSSLKAKIKSSLCLSCCLRRHRNGHHHLQRHQ------HQRRMSFSSDGDVPSPLTRCSSAKDKSRSRESPESKTDWRPHFISRLGRH

Query:  SRRHSSASVDFHYDALSYALNFDEGYDEGHVDDAFPLRNFSSRLPASPPKSAPSSTETSREMTTAYS
         RRH SAS DF YDALSY+LNFDEGYDEGHVDD FPLRNFSSRLPASPPKS+PSS+  SREM TA+S
Subjt:  SRRHSSASVDFHYDALSYALNFDEGYDEGHVDDAFPLRNFSSRLPASPPKSAPSSTETSREMTTAYS

A0A5D3BFQ4 Uncharacterized protein

1.3e-58

76.05

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Query:  MDDSNEHKENASPSSLKAKIKSSLCLSCCLRRHRNGHHHLQRHQ------HQRRMSFSSDGDVPSPLTRCSSAKDKSRSRESPESKTDWRPHFISRLGRH
        MDDSNEHK N+S S+LK  +KSSLCLSCCLR+HRNGHHHL  H       H RRMS SSDGD P PLTRCSSAKDKSRSRE  + K D  P+FISRLGRH
Subjt:  MDDSNEHKENASPSSLKAKIKSSLCLSCCLRRHRNGHHHLQRHQ------HQRRMSFSSDGDVPSPLTRCSSAKDKSRSRESPESKTDWRPHFISRLGRH

Query:  SRRHSSASVDFHYDALSYALNFDEGYDEGHVDDAFPLRNFSSRLPASPPKSAPSSTETSREMTTAYS
         RRH SAS DF YDALSY+LNFDEGYDEGHVDD FPLRNFSSRLPASPPKSAPSS+  SREM TA+S
Subjt:  SRRHSSASVDFHYDALSYALNFDEGYDEGHVDDAFPLRNFSSRLPASPPKSAPSSTETSREMTTAYS

A0A6J1FDP2 uncharacterized protein LOC111444439

1.8e-84

100

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Query:  MDDSNEHKENASPSSLKAKIKSSLCLSCCLRRHRNGHHHLQRHQHQRRMSFSSDGDVPSPLTRCSSAKDKSRSRESPESKTDWRPHFISRLGRHSRRHSS
        MDDSNEHKENASPSSLKAKIKSSLCLSCCLRRHRNGHHHLQRHQHQRRMSFSSDGDVPSPLTRCSSAKDKSRSRESPESKTDWRPHFISRLGRHSRRHSS
Subjt:  MDDSNEHKENASPSSLKAKIKSSLCLSCCLRRHRNGHHHLQRHQHQRRMSFSSDGDVPSPLTRCSSAKDKSRSRESPESKTDWRPHFISRLGRHSRRHSS

Query:  ASVDFHYDALSYALNFDEGYDEGHVDDAFPLRNFSSRLPASPPKSAPSSTETSREMTTAYS
        ASVDFHYDALSYALNFDEGYDEGHVDDAFPLRNFSSRLPASPPKSAPSSTETSREMTTAYS
Subjt:  ASVDFHYDALSYALNFDEGYDEGHVDDAFPLRNFSSRLPASPPKSAPSSTETSREMTTAYS

A0A6J1HQB7 uncharacterized protein LOC111465710

2.9e-82

97.52

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Query:  MDDSNEHKENASPSSLKAKIKSSLCLSCCLRRHRNGHHHLQRHQHQRRMSFSSDGDVPSPLTRCSSAKDKSRSRESPESKTDWRPHFISRLGRHSRRHSS
        MDDSNEHKENASPSSLKAKIKSSLCLSCCLRRHRNGHHHLQRHQHQRRMSFSSDGDVP+PLTRCSSAKDKSRSRESPESKTDWRPHFISRLG HSRRHSS
Subjt:  MDDSNEHKENASPSSLKAKIKSSLCLSCCLRRHRNGHHHLQRHQHQRRMSFSSDGDVPSPLTRCSSAKDKSRSRESPESKTDWRPHFISRLGRHSRRHSS

Query:  ASVDFHYDALSYALNFDEGYDEGHVDDAFPLRNFSSRLPASPPKSAPSSTETSREMTTAYS
        ASVDFHYDALSYALNFDEGYDEGHVDDAFPLRNFSSRLPASPPKS PSS+ETSREMTTAYS
Subjt:  ASVDFHYDALSYALNFDEGYDEGHVDDAFPLRNFSSRLPASPPKSAPSSTETSREMTTAYS

SwissProt top hits	e value	%identity	Alignment
No hits found

Arabidopsis top hits

e value

%identity

Alignment

AT3G01430.1 BEST Arabidopsis thaliana protein match is: NHL domain-containing protein (TAIR:AT5G14890.1)

2.6e-06

50.91

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Query:  SSASVDFHYDALSYALNFDEGYDEGHVDDAFPLRNFSSRLPASPPKSAPSSTETS
        SS    F YD LSY+LNFD+G   GH DD FP R++S R  A    S P ST+ S
Subjt:  SSASVDFHYDALSYALNFDEGYDEGHVDDAFPLRNFSSRLPASPPKSAPSSTETS

AT5G14890.1 NHL domain-containing protein

1.3e-05

49.02

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Query:  VDFHYDALSYALNFDEGYDEGHVDDAFPLRNFSSRLPASPPKSAPSSTETS
        V F YD+ SY+LNFD+G   GH +D FP R++S R  A    S P ST+ S
Subjt:  VDFHYDALSYALNFDEGYDEGHVDDAFPLRNFSSRLPASPPKSAPSSTETS

AT5G35090.1 unknown protein

5.4e-12

35.76

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Query:  ENASPSSLKAKIKSSLCLSCCLRRHRNGHHHLQRHQHQRRMSFSSDGDVPSPLTRCSSAKDKSRSRESPESKTDWRPHFISRL----------GRHSRRH
        E  +  SL+ K+KS  C++ C R   N HHH            +++    SP       K    +R   +S    +   I R+          G+H RRH
Subjt:  ENASPSSLKAKIKSSLCLSCCLRRHRNGHHHLQRHQHQRRMSFSSDGDVPSPLTRCSSAKDKSRSRESPESKTDWRPHFISRL----------GRHSRRH

Query:  SSASVDFHYDALSYALNFDEGYDEGHVDDAFPLRNFSSRLPASPPKSAPSS
        ++   DFHYD  SYALNFD+G ++ ++ D FPLRNFS+RLP SPP SA ++
Subjt:  SSASVDFHYDALSYALNFDEGYDEGHVDDAFPLRNFSSRLPASPPKSAPSS

Sequences

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CDS sequence

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ATGGACGATTCGAACGAGCATAAAGAAAATGCATCACCGTCGTCTCTGAAGGCGAAAATCAAATCTTCTCTGTGTTTGTCCTGCTGCCTTCGTAGGCACCGGAACGGCCA
CCACCACCTTCAACGCCACCAACACCAACGGCGGATGTCGTTTTCCTCTGATGGAGATGTGCCTAGTCCGCTCACGAGGTGTTCCTCTGCCAAGGATAAATCCAGATCTC
GCGAGAGTCCTGAGTCTAAGACCGATTGGCGTCCGCATTTCATTTCGCGACTTGGCCGCCATTCTCGCCGTCATTCTTCTGCTTCCGTCGATTTTCACTACGATGCGCTT
AGTTATGCGCTTAATTTTGATGAAGGATACGATGAAGGACATGTTGATGATGCGTTTCCGCTCAGAAATTTCTCCTCTAGGTTACCGGCTTCTCCGCCAAAATCAGCGCC
GTCTTCCACGGAGACGTCGAGGGAGATGACCACGGCGTATAGCTAA

mRNA sequence

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Protein sequence

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MDDSNEHKENASPSSLKAKIKSSLCLSCCLRRHRNGHHHLQRHQHQRRMSFSSDGDVPSPLTRCSSAKDKSRSRESPESKTDWRPHFISRLGRHSRRHSSASVDFHYDAL
SYALNFDEGYDEGHVDDAFPLRNFSSRLPASPPKSAPSSTETSREMTTAYS

CmoCh12G011860 (gene) of Cucurbita moschata (Rifu) v1 genome