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CmoCh12G011880 (gene) of Cucurbita moschata (Rifu) v1 genome

Gene IDCmoCh12G011880
OrganismCucurbita moschata Rifu (Cucurbita moschata (Rifu) v1)
DescriptionUnknown protein
Genome locationCmo_Chr12:10715320..10715646
RNA-Seq ExpressionCmoCh12G011880
SyntenyCmoCh12G011880
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG6586353.1 hypothetical protein SDJN03_19086, partial [Cucurbita argyrosperma subsp. sororia]2.6e-5298.15Show/hide
Query:  MAADGVLRPVYEACIAGCDSEIHRRPYHRNCGCALHESRRQLSHCYHSKYKSVSYPIRRSWSEGCLTLAFASPSSSPSSSPVVGKSSQPGAALSDDDDDD
        MAADGVLRPVYEACIAGCDSEIHRRPYHRNCGCALHESRRQLSHCYHSKYKSVSYPIRRSWSEG LTLAFASPSSSPSSSPVVGK SQPGAALSDDDDDD
Subjt:  MAADGVLRPVYEACIAGCDSEIHRRPYHRNCGCALHESRRQLSHCYHSKYKSVSYPIRRSWSEGCLTLAFASPSSSPSSSPVVGKSSQPGAALSDDDDDD

Query:  APVQFNRS
        APVQFNRS
Subjt:  APVQFNRS

KAG7021199.1 hypothetical protein SDJN02_17887, partial [Cucurbita argyrosperma subsp. argyrosperma]1.8e-5399.07Show/hide
Query:  MAADGVLRPVYEACIAGCDSEIHRRPYHRNCGCALHESRRQLSHCYHSKYKSVSYPIRRSWSEGCLTLAFASPSSSPSSSPVVGKSSQPGAALSDDDDDD
        MAADGVLRPVYEACIAGCDSEIHRRPYHRNCGCALHESRRQLSHCYHSKYKSVSYPIRRSWSEGCLTLAFASPSSSPSSSPVVGK SQPGAALSDDDDDD
Subjt:  MAADGVLRPVYEACIAGCDSEIHRRPYHRNCGCALHESRRQLSHCYHSKYKSVSYPIRRSWSEGCLTLAFASPSSSPSSSPVVGKSSQPGAALSDDDDDD

Query:  APVQFNRS
        APVQFNRS
Subjt:  APVQFNRS

XP_022938303.1 uncharacterized protein LOC111444438 [Cucurbita moschata]3.6e-54100Show/hide
Query:  MAADGVLRPVYEACIAGCDSEIHRRPYHRNCGCALHESRRQLSHCYHSKYKSVSYPIRRSWSEGCLTLAFASPSSSPSSSPVVGKSSQPGAALSDDDDDD
        MAADGVLRPVYEACIAGCDSEIHRRPYHRNCGCALHESRRQLSHCYHSKYKSVSYPIRRSWSEGCLTLAFASPSSSPSSSPVVGKSSQPGAALSDDDDDD
Subjt:  MAADGVLRPVYEACIAGCDSEIHRRPYHRNCGCALHESRRQLSHCYHSKYKSVSYPIRRSWSEGCLTLAFASPSSSPSSSPVVGKSSQPGAALSDDDDDD

Query:  APVQFNRS
        APVQFNRS
Subjt:  APVQFNRS

XP_022965412.1 uncharacterized protein LOC111465326 [Cucurbita maxima]9.5e-4792.59Show/hide
Query:  MAADGVLRPVYEACIAGCDSEIHRRPYHRNCGCALHESRRQLSHCYHSKYKSVSYPIRRSWSEGCLTLAFASPSSSPSSSPVVGKSSQPGAALSDDDDDD
        MAADGVLRPVYEACIAGCDSEIHRRPYHRNCGCALHESRRQLSHCYHSKYKSV YPIRRSWSEGCLTLA A    SPSSSPVVGKSSQPGAALS DDDDD
Subjt:  MAADGVLRPVYEACIAGCDSEIHRRPYHRNCGCALHESRRQLSHCYHSKYKSVSYPIRRSWSEGCLTLAFASPSSSPSSSPVVGKSSQPGAALSDDDDDD

Query:  APVQFNRS
        APVQF RS
Subjt:  APVQFNRS

XP_023536961.1 uncharacterized protein LOC111798188 [Cucurbita pepo subsp. pepo]5.7e-5297.25Show/hide
Query:  MAADGVLRPVYEACIAGCDSEIHRRPYHRNCGCALHESRRQLSHCYHSKYKSVSYPIRRSWSEGCLTLAFASPSSSPSSSPVVGKSSQPGAALS-DDDDD
        MAADGVLRPVYEACIAGCDSE+HRRPYHRNCGCALHESRRQLSHCYHSKYKSVSYPIRRSWSEGCLTLAFASPSSSPSSSPVVGKSSQPGAALS DDDDD
Subjt:  MAADGVLRPVYEACIAGCDSEIHRRPYHRNCGCALHESRRQLSHCYHSKYKSVSYPIRRSWSEGCLTLAFASPSSSPSSSPVVGKSSQPGAALS-DDDDD

Query:  DAPVQFNRS
        DAPVQF RS
Subjt:  DAPVQFNRS

TrEMBL top hitse value%identityAlignment
A0A0A0LI78 Uncharacterized protein6.4e-4180.37Show/hide
Query:  MAADGVLRPVYEACIAGCDSEIHRRPYHRNCGCALHESRRQLSHCYHSKYKSVSYPIRRSWSEGCLTLAFASPSSSPSSSPVVGKSSQPGAALSDDDDDD
        MAADG+LRP+YEACI GCDSEIHRRPYHRNCGCALH+S RQ  HC HSK KS+SYPIRRSWSEGCL+L  AS SSSPSSSPVVGK+SQPGA LS+DDDDD
Subjt:  MAADGVLRPVYEACIAGCDSEIHRRPYHRNCGCALHESRRQLSHCYHSKYKSVSYPIRRSWSEGCLTLAFASPSSSPSSSPVVGKSSQPGAALSDDDDDD

Query:  APVQFNR
        +P+ F R
Subjt:  APVQFNR

A0A1S4E0F4 uncharacterized protein LOC1034996141.4e-4384.11Show/hide
Query:  MAADGVLRPVYEACIAGCDSEIHRRPYHRNCGCALHESRRQLSHCYHSKYKSVSYPIRRSWSEGCLTLAFASPSSSPSSSPVVGKSSQPGAALSDDDDDD
        MAADG+LRPVYEACIAGCDSEIHRRPYHRNC CALH+SRRQ  HC HSK KS+SYPIRRSWSEGCL+LA AS SSSPS+SPVVGK+SQPGAALS+DDDDD
Subjt:  MAADGVLRPVYEACIAGCDSEIHRRPYHRNCGCALHESRRQLSHCYHSKYKSVSYPIRRSWSEGCLTLAFASPSSSPSSSPVVGKSSQPGAALSDDDDDD

Query:  APVQFNR
        AP+ F R
Subjt:  APVQFNR

A0A6J1FII0 uncharacterized protein LOC1114444381.7e-54100Show/hide
Query:  MAADGVLRPVYEACIAGCDSEIHRRPYHRNCGCALHESRRQLSHCYHSKYKSVSYPIRRSWSEGCLTLAFASPSSSPSSSPVVGKSSQPGAALSDDDDDD
        MAADGVLRPVYEACIAGCDSEIHRRPYHRNCGCALHESRRQLSHCYHSKYKSVSYPIRRSWSEGCLTLAFASPSSSPSSSPVVGKSSQPGAALSDDDDDD
Subjt:  MAADGVLRPVYEACIAGCDSEIHRRPYHRNCGCALHESRRQLSHCYHSKYKSVSYPIRRSWSEGCLTLAFASPSSSPSSSPVVGKSSQPGAALSDDDDDD

Query:  APVQFNRS
        APVQFNRS
Subjt:  APVQFNRS

A0A6J1HKA0 uncharacterized protein LOC1114653264.6e-4792.59Show/hide
Query:  MAADGVLRPVYEACIAGCDSEIHRRPYHRNCGCALHESRRQLSHCYHSKYKSVSYPIRRSWSEGCLTLAFASPSSSPSSSPVVGKSSQPGAALSDDDDDD
        MAADGVLRPVYEACIAGCDSEIHRRPYHRNCGCALHESRRQLSHCYHSKYKSV YPIRRSWSEGCLTLA A    SPSSSPVVGKSSQPGAALS DDDDD
Subjt:  MAADGVLRPVYEACIAGCDSEIHRRPYHRNCGCALHESRRQLSHCYHSKYKSVSYPIRRSWSEGCLTLAFASPSSSPSSSPVVGKSSQPGAALSDDDDDD

Query:  APVQFNRS
        APVQF RS
Subjt:  APVQFNRS

A0A6J1KE46 uncharacterized protein LOC1114935297.6e-4281.48Show/hide
Query:  MAADGVLRPVYEACIAGCDSEIHRRPYHRNCGCALHESRRQLSHCYHSKYKSVSYPIRRSWSEGCLTLAFASPSSSPSSSPVVGKSSQPGAALSDDDDDD
        MAADG+LRPVYEACIAGCD+EI RRPYHRNCGCALH+SRRQ   C HSK KS+ YPIRRSWSEGCL LA AS SSSPSSSPVVGK+SQPG ALSDDDDDD
Subjt:  MAADGVLRPVYEACIAGCDSEIHRRPYHRNCGCALHESRRQLSHCYHSKYKSVSYPIRRSWSEGCLTLAFASPSSSPSSSPVVGKSSQPGAALSDDDDDD

Query:  APVQFNRS
        AP+Q  R+
Subjt:  APVQFNRS

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
AT2G46490.1 unknown protein1.4e-1644.35Show/hide
Query:  MAADGVLRPVYEACIAGCDSEIHRRPYHRNCGCALHE----------SRRQLSHCYHSKYKSVSYPIRRSWSEG-CLTLAFASPSSSPSSSPVVGKSSQP
        MAADG+ R ++E CI+G DS I RRPYH+NCGCALH+           RR  S   H   +S+S+PIRRSWSEG  + +   S SSS S+   +  SS  
Subjt:  MAADGVLRPVYEACIAGCDSEIHRRPYHRNCGCALHE----------SRRQLSHCYHSKYKSVSYPIRRSWSEG-CLTLAFASPSSSPSSSPVVGKSSQP

Query:  GAALSDDDDDDAPVQ
            SD   D+A  +
Subjt:  GAALSDDDDDDAPVQ

AT5G35110.1 unknown protein2.4e-1647.17Show/hide
Query:  DGVLRPVYEACIAGCDSEIHRRPYHRNCGCALHESRR---QLSHCYHSKYKSVSYPIRRSWSEG-CLTLAFASPSSSPSSSPVVGKSS-QPGAALSDD-D
        DG+ R ++E CI+ CDS I RRPYH+NCGCALHE  R     + C H + + V +PI+RSWSEG  L L  AS SSS +   +   SS    A+LS    
Subjt:  DGVLRPVYEACIAGCDSEIHRRPYHRNCGCALHESRR---QLSHCYHSKYKSVSYPIRRSWSEG-CLTLAFASPSSSPSSSPVVGKSS-QPGAALSDD-D

Query:  DDDAPV
        D D+P+
Subjt:  DDDAPV


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGCCGCCGACGGCGTCCTCCGCCCCGTCTACGAGGCTTGCATCGCCGGCTGTGACTCCGAGATCCACCGTCGTCCCTACCATCGCAACTGCGGCTGCGCTCTCCACGA
ATCCCGCCGTCAACTTTCCCACTGCTACCATTCCAAGTACAAATCCGTCTCCTATCCCATTCGCCGATCCTGGAGCGAAGGTTGCTTGACGCTCGCCTTCGCCTCTCCTT
CCTCTTCCCCTTCCTCCTCCCCTGTCGTCGGTAAGTCCTCACAGCCTGGTGCCGCTTTGAGCGACGACGACGACGACGACGCTCCTGTTCAGTTTAACAGGAGTTGA
mRNA sequenceShow/hide mRNA sequence
ATGGCCGCCGACGGCGTCCTCCGCCCCGTCTACGAGGCTTGCATCGCCGGCTGTGACTCCGAGATCCACCGTCGTCCCTACCATCGCAACTGCGGCTGCGCTCTCCACGA
ATCCCGCCGTCAACTTTCCCACTGCTACCATTCCAAGTACAAATCCGTCTCCTATCCCATTCGCCGATCCTGGAGCGAAGGTTGCTTGACGCTCGCCTTCGCCTCTCCTT
CCTCTTCCCCTTCCTCCTCCCCTGTCGTCGGTAAGTCCTCACAGCCTGGTGCCGCTTTGAGCGACGACGACGACGACGACGCTCCTGTTCAGTTTAACAGGAGTTGA
Protein sequenceShow/hide protein sequence
MAADGVLRPVYEACIAGCDSEIHRRPYHRNCGCALHESRRQLSHCYHSKYKSVSYPIRRSWSEGCLTLAFASPSSSPSSSPVVGKSSQPGAALSDDDDDDAPVQFNRS