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CmoCh12G012460 (gene) of Cucurbita moschata (Rifu) v1 genome

Gene IDCmoCh12G012460
OrganismCucurbita moschata Rifu (Cucurbita moschata (Rifu) v1)
DescriptionDynein light chain
Genome locationCmo_Chr12:11054029..11055901
RNA-Seq ExpressionCmoCh12G012460
SyntenyCmoCh12G012460
Gene Ontology termsGO:0007017 - microtubule-based process (biological process)
GO:0005737 - cytoplasm (cellular component)
GO:0005874 - microtubule (cellular component)
GO:0016021 - integral component of membrane (cellular component)
GO:0030286 - dynein complex (cellular component)
GO:0005515 - protein binding (molecular function)
InterPro domainsIPR001372 - Dynein light chain, type 1/2


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG6586401.1 hypothetical protein SDJN03_19134, partial [Cucurbita argyrosperma subsp. sororia]1.9e-70100Show/hide
Query:  MATLNKQMKGGFKSFYKSRDGACNVQACESVSVDKASVYKYNWLGRKSKKVVHQHGGSRGAKGGGDGDGSGGTEGRKMVVEGRKSVSHVETNLGSVASFL
        MATLNKQMKGGFKSFYKSRDGACNVQACESVSVDKASVYKYNWLGRKSKKVVHQHGGSRGAKGGGDGDGSGGTEGRKMVVEGRKSVSHVETNLGSVASFL
Subjt:  MATLNKQMKGGFKSFYKSRDGACNVQACESVSVDKASVYKYNWLGRKSKKVVHQHGGSRGAKGGGDGDGSGGTEGRKMVVEGRKSVSHVETNLGSVASFL

Query:  QVKVLVSDMPEMMQIQAFRCARRSYDSLEKLSSKLMAYNLKK
        QVKVLVSDMPEMMQIQAFRCARRSYDSLEKLSSKLMAYNLKK
Subjt:  QVKVLVSDMPEMMQIQAFRCARRSYDSLEKLSSKLMAYNLKK

KAG7021256.1 hypothetical protein SDJN02_17944, partial [Cucurbita argyrosperma subsp. argyrosperma]1.9e-70100Show/hide
Query:  MATLNKQMKGGFKSFYKSRDGACNVQACESVSVDKASVYKYNWLGRKSKKVVHQHGGSRGAKGGGDGDGSGGTEGRKMVVEGRKSVSHVETNLGSVASFL
        MATLNKQMKGGFKSFYKSRDGACNVQACESVSVDKASVYKYNWLGRKSKKVVHQHGGSRGAKGGGDGDGSGGTEGRKMVVEGRKSVSHVETNLGSVASFL
Subjt:  MATLNKQMKGGFKSFYKSRDGACNVQACESVSVDKASVYKYNWLGRKSKKVVHQHGGSRGAKGGGDGDGSGGTEGRKMVVEGRKSVSHVETNLGSVASFL

Query:  QVKVLVSDMPEMMQIQAFRCARRSYDSLEKLSSKLMAYNLKK
        QVKVLVSDMPEMMQIQAFRCARRSYDSLEKLSSKLMAYNLKK
Subjt:  QVKVLVSDMPEMMQIQAFRCARRSYDSLEKLSSKLMAYNLKK

XP_022938230.1 uncharacterized protein LOC111444374 [Cucurbita moschata]1.9e-70100Show/hide
Query:  MATLNKQMKGGFKSFYKSRDGACNVQACESVSVDKASVYKYNWLGRKSKKVVHQHGGSRGAKGGGDGDGSGGTEGRKMVVEGRKSVSHVETNLGSVASFL
        MATLNKQMKGGFKSFYKSRDGACNVQACESVSVDKASVYKYNWLGRKSKKVVHQHGGSRGAKGGGDGDGSGGTEGRKMVVEGRKSVSHVETNLGSVASFL
Subjt:  MATLNKQMKGGFKSFYKSRDGACNVQACESVSVDKASVYKYNWLGRKSKKVVHQHGGSRGAKGGGDGDGSGGTEGRKMVVEGRKSVSHVETNLGSVASFL

Query:  QVKVLVSDMPEMMQIQAFRCARRSYDSLEKLSSKLMAYNLKK
        QVKVLVSDMPEMMQIQAFRCARRSYDSLEKLSSKLMAYNLKK
Subjt:  QVKVLVSDMPEMMQIQAFRCARRSYDSLEKLSSKLMAYNLKK

XP_022965961.1 uncharacterized protein LOC111465683 [Cucurbita maxima]3.1e-6593.66Show/hide
Query:  MATLNKQMKGGFKSFYKSRDGACNVQACESVSVDKASVYKYNWLGRKSKKVVHQHGGSRGAKGGGDGDGSGGTEGRKMVVEGRKSVSHVETNLGSVASFL
        M T+NKQMKGGFKSFYKSRDGACNVQACESVSVDKA VYKYNWLGRKSKK VHQHGG RGAKGGG GD  GGTEGRKMVVEGRKSVSHVETNLGSVASFL
Subjt:  MATLNKQMKGGFKSFYKSRDGACNVQACESVSVDKASVYKYNWLGRKSKKVVHQHGGSRGAKGGGDGDGSGGTEGRKMVVEGRKSVSHVETNLGSVASFL

Query:  QVKVLVSDMPEMMQIQAFRCARRSYDSLEKLSSKLMAYNLKK
        QVKVLVSDMPEMMQIQAFRCARRSYDSLEK SSKLMAYNLKK
Subjt:  QVKVLVSDMPEMMQIQAFRCARRSYDSLEKLSSKLMAYNLKK

XP_023538230.1 uncharacterized protein LOC111799067 [Cucurbita pepo subsp. pepo]4.8e-6695.83Show/hide
Query:  MATLNKQMKGGFKSFYKSRDGACNVQACESVSVDKASVYKYNWLGRKSKKVVHQHGGSRGAKGGGDGD--GSGGTEGRKMVVEGRKSVSHVETNLGSVAS
        MATLNKQMKGGFKSFYKSRDGA +VQACESVSVDK SVYKYNWLGRKSKKVVHQHGGSRGAKGGGDGD  G GGTEGRKMVVEGRKSVSHVETNLGSVAS
Subjt:  MATLNKQMKGGFKSFYKSRDGACNVQACESVSVDKASVYKYNWLGRKSKKVVHQHGGSRGAKGGGDGD--GSGGTEGRKMVVEGRKSVSHVETNLGSVAS

Query:  FLQVKVLVSDMPEMMQIQAFRCARRSYDSLEKLSSKLMAYNLKK
        FLQVKVLVSDMPEMMQIQAFRCARRSYDSLEKLSSKLMAYNLKK
Subjt:  FLQVKVLVSDMPEMMQIQAFRCARRSYDSLEKLSSKLMAYNLKK

TrEMBL top hitse value%identityAlignment
A0A0A0LKY0 Uncharacterized protein1.0e-4574.67Show/hide
Query:  MATLNKQMKGGFKSFYKSRDGACNVQACESV---SVDKASVYKYNWLGRKSKKVVHQHGGSRGAKGGGDGDGSGGTE-----GRKMVVEGRKSVSHVETN
        MATLNKQMK GFKSFYKSRDG  NV + E +   SVDK S+YKYNWLGRKSKK   QHG      GGG G G GG       GRK+VVEGRKSVSHVETN
Subjt:  MATLNKQMKGGFKSFYKSRDGACNVQACESV---SVDKASVYKYNWLGRKSKKVVHQHGGSRGAKGGGDGDGSGGTE-----GRKMVVEGRKSVSHVETN

Query:  LGSVASFLQVKVLVSDMPEMMQIQAFRCARRSYDSLEKLSSKLMAYNLKK
        LGSVASFLQVKVLVSDMPE+MQIQAFR ARRSYDSLEK SSK MAYN+KK
Subjt:  LGSVASFLQVKVLVSDMPEMMQIQAFRCARRSYDSLEKLSSKLMAYNLKK

A0A5D3BEW1 Dynein light chain7.2e-4476.87Show/hide
Query:  MATLNKQMKGGFKSFYKSRD-GACNVQACESV---SVDKASVYKYNWLGRKSKKVVHQHGGSRGAKGGGDGDGSGGTEGRKMVVEGRKSVSHVETNLGSV
        MATLNKQMK GFKSFYKSRD G  NV + E V   SVDK S+YKYNWLGRKSKK   QH G  GA  GG G+   G  GRK+VVEGRKSVSHVETNLGSV
Subjt:  MATLNKQMKGGFKSFYKSRD-GACNVQACESV---SVDKASVYKYNWLGRKSKKVVHQHGGSRGAKGGGDGDGSGGTEGRKMVVEGRKSVSHVETNLGSV

Query:  ASFLQVKVLVSDMPEMMQIQAFRCARRSYDSLEKLSSKLMAYNLKKV
        ASFLQVKVLVSDMPE+MQIQAFR ARRSYDSLEK SSK MAYN+KKV
Subjt:  ASFLQVKVLVSDMPEMMQIQAFRCARRSYDSLEKLSSKLMAYNLKKV

A0A6J1CN34 uncharacterized protein LOC1110131131.5e-4473.61Show/hide
Query:  MATLNKQMKGGFKSFYKSRDGACNVQACESVSVDKASVYKYNWLGRKSKKVVHQHGGSRGAK-GGGDGDGSGGTEGRK-MVVEGRKSVSHVETNLGSVAS
        MATLNKQ+K GFKSFYKSRDGA +  A +   +D+  VYKYNWLGRKSKK   QHGG RG + GGG GDG  G  GRK +VVEGRKSVSHVETNL SVA+
Subjt:  MATLNKQMKGGFKSFYKSRDGACNVQACESVSVDKASVYKYNWLGRKSKKVVHQHGGSRGAK-GGGDGDGSGGTEGRK-MVVEGRKSVSHVETNLGSVAS

Query:  FLQVKVLVSDMPEMMQIQAFRCARRSYDSLEKLSSKLMAYNLKK
        FLQVKVLVSDMPEMMQ+QAFR ARRSYDSLEK SSK MA+++KK
Subjt:  FLQVKVLVSDMPEMMQIQAFRCARRSYDSLEKLSSKLMAYNLKK

A0A6J1FJ58 uncharacterized protein LOC1114443749.1e-71100Show/hide
Query:  MATLNKQMKGGFKSFYKSRDGACNVQACESVSVDKASVYKYNWLGRKSKKVVHQHGGSRGAKGGGDGDGSGGTEGRKMVVEGRKSVSHVETNLGSVASFL
        MATLNKQMKGGFKSFYKSRDGACNVQACESVSVDKASVYKYNWLGRKSKKVVHQHGGSRGAKGGGDGDGSGGTEGRKMVVEGRKSVSHVETNLGSVASFL
Subjt:  MATLNKQMKGGFKSFYKSRDGACNVQACESVSVDKASVYKYNWLGRKSKKVVHQHGGSRGAKGGGDGDGSGGTEGRKMVVEGRKSVSHVETNLGSVASFL

Query:  QVKVLVSDMPEMMQIQAFRCARRSYDSLEKLSSKLMAYNLKK
        QVKVLVSDMPEMMQIQAFRCARRSYDSLEKLSSKLMAYNLKK
Subjt:  QVKVLVSDMPEMMQIQAFRCARRSYDSLEKLSSKLMAYNLKK

A0A6J1HN27 uncharacterized protein LOC1114656831.5e-6593.66Show/hide
Query:  MATLNKQMKGGFKSFYKSRDGACNVQACESVSVDKASVYKYNWLGRKSKKVVHQHGGSRGAKGGGDGDGSGGTEGRKMVVEGRKSVSHVETNLGSVASFL
        M T+NKQMKGGFKSFYKSRDGACNVQACESVSVDKA VYKYNWLGRKSKK VHQHGG RGAKGGG GD  GGTEGRKMVVEGRKSVSHVETNLGSVASFL
Subjt:  MATLNKQMKGGFKSFYKSRDGACNVQACESVSVDKASVYKYNWLGRKSKKVVHQHGGSRGAKGGGDGDGSGGTEGRKMVVEGRKSVSHVETNLGSVASFL

Query:  QVKVLVSDMPEMMQIQAFRCARRSYDSLEKLSSKLMAYNLKK
        QVKVLVSDMPEMMQIQAFRCARRSYDSLEK SSKLMAYNLKK
Subjt:  QVKVLVSDMPEMMQIQAFRCARRSYDSLEKLSSKLMAYNLKK

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
AT5G20110.1 Dynein light chain type 1 family protein8.5e-1359.09Show/hide
Query:  EGRKSVSHVE----TNLGSVASFLQVKVLVSDMPEMMQIQAFRCARRSYDSLEKLSSKLMAYNLKK
        EGRKSVSHVE      + + A  L V++L +DMP  MQ  AFRCAR + DSLEK SSK MA+NLKK
Subjt:  EGRKSVSHVE----TNLGSVASFLQVKVLVSDMPEMMQIQAFRCARRSYDSLEKLSSKLMAYNLKK


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGCTACTCTAAACAAGCAAATGAAAGGAGGATTCAAGTCCTTTTACAAGTCTCGAGATGGAGCTTGTAACGTACAAGCATGTGAGTCTGTTTCAGTGGATAAAGCATC
TGTTTACAAGTATAACTGGTTGGGTAGGAAGAGTAAGAAGGTCGTTCATCAACATGGCGGGTCGAGAGGGGCGAAGGGCGGTGGGGACGGTGACGGAAGCGGGGGAACGG
AGGGGAGAAAGATGGTGGTTGAGGGTAGGAAGTCAGTTTCCCATGTGGAAACGAACTTGGGATCAGTGGCTTCATTTCTTCAAGTGAAGGTATTGGTATCAGACATGCCT
GAGATGATGCAAATTCAGGCGTTTAGATGTGCAAGGAGGAGCTATGACAGCTTGGAGAAGCTCAGCTCAAAGCTCATGGCTTACAATCTCAAAAAGGTAATGAGTTTGAC
AAAGTACATGGGCCGGCCTGGCATTGCATTGTGGGCTCAAGTTTCGGGTCATTTGTGA
mRNA sequenceShow/hide mRNA sequence
ATGGCTACTCTAAACAAGCAAATGAAAGGAGGATTCAAGTCCTTTTACAAGTCTCGAGATGGAGCTTGTAACGTACAAGCATGTGAGTCTGTTTCAGTGGATAAAGCATC
TGTTTACAAGTATAACTGGTTGGGTAGGAAGAGTAAGAAGGTCGTTCATCAACATGGCGGGTCGAGAGGGGCGAAGGGCGGTGGGGACGGTGACGGAAGCGGGGGAACGG
AGGGGAGAAAGATGGTGGTTGAGGGTAGGAAGTCAGTTTCCCATGTGGAAACGAACTTGGGATCAGTGGCTTCATTTCTTCAAGTGAAGGTATTGGTATCAGACATGCCT
GAGATGATGCAAATTCAGGCGTTTAGATGTGCAAGGAGGAGCTATGACAGCTTGGAGAAGCTCAGCTCAAAGCTCATGGCTTACAATCTCAAAAAGGTAATGAGTTTGAC
AAAGTACATGGGCCGGCCTGGCATTGCATTGTGGGCTCAAGTTTCGGGTCATTTGTGACCCATTCAACAGGTTGCTTCCTATATTTTTCAATGGAGGAATTATATATTTT
ATTATTTAGAACTAAGATTCAGAAAGCTACTGAATGAATGAGTTCATTTAATGAACCTAATGTAAAGGCAATTTTTATTAATATTGTACAAAAC
Protein sequenceShow/hide protein sequence
MATLNKQMKGGFKSFYKSRDGACNVQACESVSVDKASVYKYNWLGRKSKKVVHQHGGSRGAKGGGDGDGSGGTEGRKMVVEGRKSVSHVETNLGSVASFLQVKVLVSDMP
EMMQIQAFRCARRSYDSLEKLSSKLMAYNLKKVMSLTKYMGRPGIALWAQVSGHL