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CmoCh12G012500 (gene) of Cucurbita moschata (Rifu) v1 genome

Gene IDCmoCh12G012500
OrganismCucurbita moschata Rifu (Cucurbita moschata (Rifu) v1)
Descriptionzinc finger Ran-binding domain-containing protein 2-like
Genome locationCmo_Chr12:11086034..11087046
RNA-Seq ExpressionCmoCh12G012500
SyntenyCmoCh12G012500
Gene Ontology termsGO:0046872 - metal ion binding (molecular function)
InterPro domainsIPR001876 - Zinc finger, RanBP2-type
IPR036443 - Zinc finger, RanBP2-type superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG6586405.1 hypothetical protein SDJN03_19138, partial [Cucurbita argyrosperma subsp. sororia]1.9e-7297.54Show/hide
Query:  MNMNWSGGDWMCGVCEHVNFKKREACQRCGYPKYGGPDPSTYEFNKTEVLAGDWYCHCGAHNYASRSSCYRCNAYKSADICALPGWKSGDWICNRIGCET
        MNMNWSGGDWMCGVCEHVNFKKREACQRCGYPKYGGPDPSTYEFNKTEVLAGDWYCHCGAHNYASR SCYRCNAYKSADI ALPGWKSGDWICNRIGCET
Subjt:  MNMNWSGGDWMCGVCEHVNFKKREACQRCGYPKYGGPDPSTYEFNKTEVLAGDWYCHCGAHNYASRSSCYRCNAYKSADICALPGWKSGDWICNRIGCET

Query:  HNYASRMECYKCKTPRNFGGAV
        HNYASRMECYKCKTPR+FGGAV
Subjt:  HNYASRMECYKCKTPRNFGGAV

XP_022937997.1 zinc finger Ran-binding domain-containing protein 2-like [Cucurbita moschata]4.2e-75100Show/hide
Query:  MNMNWSGGDWMCGVCEHVNFKKREACQRCGYPKYGGPDPSTYEFNKTEVLAGDWYCHCGAHNYASRSSCYRCNAYKSADICALPGWKSGDWICNRIGCET
        MNMNWSGGDWMCGVCEHVNFKKREACQRCGYPKYGGPDPSTYEFNKTEVLAGDWYCHCGAHNYASRSSCYRCNAYKSADICALPGWKSGDWICNRIGCET
Subjt:  MNMNWSGGDWMCGVCEHVNFKKREACQRCGYPKYGGPDPSTYEFNKTEVLAGDWYCHCGAHNYASRSSCYRCNAYKSADICALPGWKSGDWICNRIGCET

Query:  HNYASRMECYKCKTPRNFGGAV
        HNYASRMECYKCKTPRNFGGAV
Subjt:  HNYASRMECYKCKTPRNFGGAV

XP_022966014.1 zinc finger Ran-binding domain-containing protein 2-like [Cucurbita maxima]8.7e-7397.54Show/hide
Query:  MNMNWSGGDWMCGVCEHVNFKKREACQRCGYPKYGGPDPSTYEFNKTEVLAGDWYCHCGAHNYASRSSCYRCNAYKSADICALPGWKSGDWICNRIGCET
        MNMNWSGGDWMCGVCEHVNFKKREACQRCGYPKYGGPDP+TYEFNKTEVLAGDWYCHCGAHNYASRSSCYRCNAYKSADI ALPGWKSGDWICNRIGCET
Subjt:  MNMNWSGGDWMCGVCEHVNFKKREACQRCGYPKYGGPDPSTYEFNKTEVLAGDWYCHCGAHNYASRSSCYRCNAYKSADICALPGWKSGDWICNRIGCET

Query:  HNYASRMECYKCKTPRNFGGAV
        HNYASRMECYKCKTPR+FGGAV
Subjt:  HNYASRMECYKCKTPRNFGGAV

XP_023538268.1 zinc finger Ran-binding domain-containing protein 2-like [Cucurbita pepo subsp. pepo]3.9e-7398.36Show/hide
Query:  MNMNWSGGDWMCGVCEHVNFKKREACQRCGYPKYGGPDPSTYEFNKTEVLAGDWYCHCGAHNYASRSSCYRCNAYKSADICALPGWKSGDWICNRIGCET
        MNMNWSGGDWMCGVCEHVNFKKREACQRCGYPKYGGPDPSTYEFNKTEVLAGDWYCHCGAHNYASRSSCYRCNAYKSADI ALPGWKSGDWICNRIGCET
Subjt:  MNMNWSGGDWMCGVCEHVNFKKREACQRCGYPKYGGPDPSTYEFNKTEVLAGDWYCHCGAHNYASRSSCYRCNAYKSADICALPGWKSGDWICNRIGCET

Query:  HNYASRMECYKCKTPRNFGGAV
        HNYASRMECYKCKTPR+FGGAV
Subjt:  HNYASRMECYKCKTPRNFGGAV

XP_038890693.1 zinc finger Ran-binding domain-containing protein 2-like [Benincasa hispida]2.5e-6486.51Show/hide
Query:  MNMNWSGGDWMCGVCEHVNFKKREACQRCGYPKYGGPDPSTYE---FNKT-EVLAGDWYCHCGAHNYASRSSCYRCNAYKSADICALPGWKSGDWICNRI
        MNMNWSGGDWMCGVCEHVNFKKREACQRCGYPKYGGPDPS Y+    +KT EVLAGDWYC+CGAHNYASRS+CYRCNAYK+ D+ ALPGWKSGDWIC RI
Subjt:  MNMNWSGGDWMCGVCEHVNFKKREACQRCGYPKYGGPDPSTYE---FNKT-EVLAGDWYCHCGAHNYASRSSCYRCNAYKSADICALPGWKSGDWICNRI

Query:  GCETHNYASRMECYKCKTPRNFGGAV
        GCETHNYASRMECYKCK PR+FGGAV
Subjt:  GCETHNYASRMECYKCKTPRNFGGAV

TrEMBL top hitse value%identityAlignment
A0A0A0LIX1 Uncharacterized protein1.7e-6182.81Show/hide
Query:  MNMNWSGGDWMCGVCEHVNFKKREACQRCGYPKYGGPDPSTYE-------FNKTEVLAGDWYCHCGAHNYASRSSCYRC--NAYKSADICALPGWKSGDW
        MNMNWSGGDWMCGVCEHVNFKKREACQRCGYPKYGGPDP+TY+        +  EVLAGDWYC+CGAHNYASRSSCY+C  NAYKS DI ALPGWKSGDW
Subjt:  MNMNWSGGDWMCGVCEHVNFKKREACQRCGYPKYGGPDPSTYE-------FNKTEVLAGDWYCHCGAHNYASRSSCYRC--NAYKSADICALPGWKSGDW

Query:  ICNRIGCETHNYASRMECYKCKTPRNFG
        IC+RIGCETHNYASRMECYKCK PR+FG
Subjt:  ICNRIGCETHNYASRMECYKCKTPRNFG

A0A1S3C6B6 uncharacterized RNA-binding protein C17H9.04c1.6e-6485.5Show/hide
Query:  MNMNWSGGDWMCGVCEHVNFKKREACQRCGYPKYGGPDPSTYE-------FNKTEVLAGDWYCHCGAHNYASRSSCYRC--NAYKSADICALPGWKSGDW
        MNMNWSGGDWMCGVCEHVNFKKREACQRCGYPKYGGPDPSTY+        +  EVLAGDWYC+CGAHNYASRSSCYRC  NAYKS DI ALPGWKSGDW
Subjt:  MNMNWSGGDWMCGVCEHVNFKKREACQRCGYPKYGGPDPSTYE-------FNKTEVLAGDWYCHCGAHNYASRSSCYRC--NAYKSADICALPGWKSGDW

Query:  ICNRIGCETHNYASRMECYKCKTPRNFGGAV
        IC+RIGCETHNYASRMECYKCKTPR+FGGAV
Subjt:  ICNRIGCETHNYASRMECYKCKTPRNFGGAV

A0A6J1CPG4 uncharacterized RNA-binding protein C17H9.04c-like1.5e-6283.59Show/hide
Query:  MNMNWSGGDWMCGVCEHVNFKKREACQRCGYPKYGGPDPSTYEFNKTE---VLAGDWYCHCGAHNYASRSSCYRC--NAYKSAD-ICALPGWKSGDWICN
        MNMNWSGGDWMCGVCEHVNFKKREACQRCGYPKYGGPDP+TYE++KT+   +LAGDWYC+CGAHNYASRS+CYRC  NA+K+ D I ALPGWKSGDWIC 
Subjt:  MNMNWSGGDWMCGVCEHVNFKKREACQRCGYPKYGGPDPSTYEFNKTE---VLAGDWYCHCGAHNYASRSSCYRC--NAYKSAD-ICALPGWKSGDWICN

Query:  RIGCETHNYASRMECYKCKTPRNFGGAV
        RIGCE HNYASRMECYKC TPR+FGGAV
Subjt:  RIGCETHNYASRMECYKCKTPRNFGGAV

A0A6J1FCS1 zinc finger Ran-binding domain-containing protein 2-like2.0e-75100Show/hide
Query:  MNMNWSGGDWMCGVCEHVNFKKREACQRCGYPKYGGPDPSTYEFNKTEVLAGDWYCHCGAHNYASRSSCYRCNAYKSADICALPGWKSGDWICNRIGCET
        MNMNWSGGDWMCGVCEHVNFKKREACQRCGYPKYGGPDPSTYEFNKTEVLAGDWYCHCGAHNYASRSSCYRCNAYKSADICALPGWKSGDWICNRIGCET
Subjt:  MNMNWSGGDWMCGVCEHVNFKKREACQRCGYPKYGGPDPSTYEFNKTEVLAGDWYCHCGAHNYASRSSCYRCNAYKSADICALPGWKSGDWICNRIGCET

Query:  HNYASRMECYKCKTPRNFGGAV
        HNYASRMECYKCKTPRNFGGAV
Subjt:  HNYASRMECYKCKTPRNFGGAV

A0A6J1HSH3 zinc finger Ran-binding domain-containing protein 2-like4.2e-7397.54Show/hide
Query:  MNMNWSGGDWMCGVCEHVNFKKREACQRCGYPKYGGPDPSTYEFNKTEVLAGDWYCHCGAHNYASRSSCYRCNAYKSADICALPGWKSGDWICNRIGCET
        MNMNWSGGDWMCGVCEHVNFKKREACQRCGYPKYGGPDP+TYEFNKTEVLAGDWYCHCGAHNYASRSSCYRCNAYKSADI ALPGWKSGDWICNRIGCET
Subjt:  MNMNWSGGDWMCGVCEHVNFKKREACQRCGYPKYGGPDPSTYEFNKTEVLAGDWYCHCGAHNYASRSSCYRCNAYKSADICALPGWKSGDWICNRIGCET

Query:  HNYASRMECYKCKTPRNFGGAV
        HNYASRMECYKCKTPR+FGGAV
Subjt:  HNYASRMECYKCKTPRNFGGAV

SwissProt top hitse value%identityAlignment
O95218 Zinc finger Ran-binding domain-containing protein 26.6e-0735.64Show/hide
Query:  NMNWSGGDWMC--GVCEHVNFKKREACQRCG--------YPKYGGPDPSTYEFNKTEVL--AGDWYCH-CGAHNYASRSSCYRCNAYKSADICALPGWKS
        N   S GDW+C    C +VNF +R +C RCG          K GG +       K+  L  A DW C  C   N+A RS C  CN  K A +    G+  
Subjt:  NMNWSGGDWMC--GVCEHVNFKKREACQRCG--------YPKYGGPDPSTYEFNKTEVL--AGDWYCH-CGAHNYASRSSCYRCNAYKSADICALPGWKS

Query:  G
        G
Subjt:  G

Q19QU3 Zinc finger Ran-binding domain-containing protein 26.6e-0735.64Show/hide
Query:  NMNWSGGDWMC--GVCEHVNFKKREACQRCG--------YPKYGGPDPSTYEFNKTEVL--AGDWYCH-CGAHNYASRSSCYRCNAYKSADICALPGWKS
        N   S GDW+C    C +VNF +R +C RCG          K GG +       K+  L  A DW C  C   N+A RS C  CN  K A +    G+  
Subjt:  NMNWSGGDWMC--GVCEHVNFKKREACQRCG--------YPKYGGPDPSTYEFNKTEVL--AGDWYCH-CGAHNYASRSSCYRCNAYKSADICALPGWKS

Query:  G
        G
Subjt:  G

Q5R580 Zinc finger Ran-binding domain-containing protein 26.6e-0735.64Show/hide
Query:  NMNWSGGDWMC--GVCEHVNFKKREACQRCG--------YPKYGGPDPSTYEFNKTEVL--AGDWYCH-CGAHNYASRSSCYRCNAYKSADICALPGWKS
        N   S GDW+C    C +VNF +R +C RCG          K GG +       K+  L  A DW C  C   N+A RS C  CN  K A +    G+  
Subjt:  NMNWSGGDWMC--GVCEHVNFKKREACQRCG--------YPKYGGPDPSTYEFNKTEVL--AGDWYCH-CGAHNYASRSSCYRCNAYKSADICALPGWKS

Query:  G
        G
Subjt:  G

Q5ZLX5 Zinc finger Ran-binding domain-containing protein 21.3e-0736.63Show/hide
Query:  NMNWSGGDWMC--GVCEHVNFKKREACQRCG--------YPKYGGPDPSTYEFNKTEVL--AGDWYCH-CGAHNYASRSSCYRCNAYKSADICALPGWKS
        N   S GDW+C    C +VNF +R +C RCG          K GG +       K+  L  A DW C  CG  N+A RS C  CN  K A +    G+  
Subjt:  NMNWSGGDWMC--GVCEHVNFKKREACQRCG--------YPKYGGPDPSTYEFNKTEVL--AGDWYCH-CGAHNYASRSSCYRCNAYKSADICALPGWKS

Query:  G
        G
Subjt:  G

Q9R020 Zinc finger Ran-binding domain-containing protein 26.6e-0735.64Show/hide
Query:  NMNWSGGDWMC--GVCEHVNFKKREACQRCG--------YPKYGGPDPSTYEFNKTEVL--AGDWYCH-CGAHNYASRSSCYRCNAYKSADICALPGWKS
        N   S GDW+C    C +VNF +R +C RCG          K GG +       K+  L  A DW C  C   N+A RS C  CN  K A +    G+  
Subjt:  NMNWSGGDWMC--GVCEHVNFKKREACQRCG--------YPKYGGPDPSTYEFNKTEVL--AGDWYCH-CGAHNYASRSSCYRCNAYKSADICALPGWKS

Query:  G
        G
Subjt:  G

Arabidopsis top hitse value%identityAlignment
AT2G17975.1 zinc finger (Ran-binding) family protein2.5e-0933.02Show/hide
Query:  GDWMCGVCEHVNFKKREACQRCGYPKYGGPDPSTYEFNKTEVLAGDWYCHCGAHNYASRSSCYR-CNAYKSADICALPGWKSGDWICNRIGCETHNYASR
        GDW+C  C + N+  RE C++CG  K      S        +     Y   G  ++    S     NA   A +     W+SGDWIC    C  HNY+SR
Subjt:  GDWMCGVCEHVNFKKREACQRCGYPKYGGPDPSTYEFNKTEVLAGDWYCHCGAHNYASRSSCYR-CNAYKSADICALPGWKSGDWICNRIGCETHNYASR

Query:  MECYKC
        ++C KC
Subjt:  MECYKC

AT2G26695.1 Ran BP2/NZF zinc finger-like superfamily protein9.9e-5158.39Show/hide
Query:  MNWSGGDWMCGVCEHVNFKKREACQRCGYPKYGGPDPSTYEFNKTEVLAGDWYC---HCGAHNYASRSSCYRCN----------------AYKSADICAL
        M+W+GGDW+CG C+H NFKKRE+CQ+CGYPK+GG D STY +N+TEV+AGDWYC   +CG+HNYASR+SCYRC                 AY +      
Subjt:  MNWSGGDWMCGVCEHVNFKKREACQRCGYPKYGGPDPSTYEFNKTEVLAGDWYC---HCGAHNYASRSSCYRCN----------------AYKSADICAL

Query:  PGWKSGDWICNRIGCETHNYASRMECYKCKTPRNFGG
        PGWK+GDW+C R+GC  HNYASR EC+KCKT R++GG
Subjt:  PGWKSGDWICNRIGCETHNYASRMECYKCKTPRNFGG

AT3G15680.1 Ran BP2/NZF zinc finger-like superfamily protein3.0e-3141.56Show/hide
Query:  GDWMCGVCEHVNFKKREACQRCG-------------YPKYGGPDPSTYEFNK-TEVLAGDWYC---HCGAHNYASRSSCYRCNAYK--------------
        GDW C  C H+NF++R++CQRCG             +  +GG   S + F   ++V  GDWYC   +CG HN+ASRS+C++C  +K              
Subjt:  GDWMCGVCEHVNFKKREACQRCG-------------YPKYGGPDPSTYEFNK-TEVLAGDWYC---HCGAHNYASRSSCYRCNAYK--------------

Query:  ----SADI--CALPG------WKSGDWICNRIGCETHNYASRMECYKCKTPRNF
             ADI    +PG      WKSGDWIC RIGC  HN+ASRMEC++C  PR+F
Subjt:  ----SADI--CALPG------WKSGDWICNRIGCETHNYASRMECYKCKTPRNF

AT5G25490.1 Ran BP2/NZF zinc finger-like superfamily protein2.4e-2837.34Show/hide
Query:  GDWMCGVCEHVNFKKREACQRCGYPKYGG------------PDPSTYEFNK-TEVLAGDWYCH---CGAHNYASRSSCYRCNAYKSADICALPG------
        GDW C +C H+NF++R++CQRC  P+ GG            P  S++ FN   +V  GDWYC+   CG HN+A+RSSC++C A K    C+         
Subjt:  GDWMCGVCEHVNFKKREACQRCGYPKYGG------------PDPSTYEFNK-TEVLAGDWYCH---CGAHNYASRSSCYRCNAYKSADICALPG------

Query:  ---------------------------WKSGDWICNRIGCETHNYASRMECYKCKTPR
                                   WKSGDWIC R GC  HN+ASR EC++C  P+
Subjt:  ---------------------------WKSGDWICNRIGCETHNYASRMECYKCKTPR


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGAACATGAACTGGTCAGGAGGAGACTGGATGTGTGGTGTGTGTGAACATGTGAACTTCAAAAAGAGGGAAGCTTGTCAACGATGTGGGTACCCGAAATACGGTGGTCC
AGACCCATCAACGTACGAGTTTAACAAAACAGAAGTGTTAGCAGGAGATTGGTATTGTCATTGTGGAGCTCACAACTATGCCAGTCGATCAAGTTGTTACAGATGTAATG
CATATAAGAGTGCTGATATTTGTGCTTTGCCCGGTTGGAAATCTGGAGATTGGATCTGTAATAGAATAGGATGCGAAACACACAATTATGCTAGTAGGATGGAATGCTAT
AAATGCAAAACTCCGAGGAATTTCGGTGGAGCGGTTTGA
mRNA sequenceShow/hide mRNA sequence
AGTTTCCAAATTCAGACTTCCAAGGACGACGATGAACATGAACTGGTCAGGAGGAGACTGGATGTGTGGTGTGTGTGAACATGTGAACTTCAAAAAGAGGGAAGCTTGTC
AACGATGTGGGTACCCGAAATACGGTGGTCCAGACCCATCAACGTACGAGTTTAACAAAACAGAAGTGTTAGCAGGAGATTGGTATTGTCATTGTGGAGCTCACAACTAT
GCCAGTCGATCAAGTTGTTACAGATGTAATGCATATAAGAGTGCTGATATTTGTGCTTTGCCCGGTTGGAAATCTGGAGATTGGATCTGTAATAGAATAGGATGCGAAAC
ACACAATTATGCTAGTAGGATGGAATGCTATAAATGCAAAACTCCGAGGAATTTCGGTGGAGCGGTTTGAATTTTTGAAGAACTCTTAGTGGAGCTATTATTTGGCCAAC
ATACAAGCTTCTAGCATCTGATTCCCTCCAATTTGCTTCTTTTTTTCCACTTTCTTTCATGAAAAAGCTAAAAAAATTCTGTTTCTTAATCTCAATTTAGAGCTAATTAA
TTAGAATTATCTCTACATCGTTCAACTATTGAGTTTGAAGGTCGTATTCATGGGCCACGAACCAAGAACTTTGAATTAGATTCAAGAATCTACTTCTAAATAAT
Protein sequenceShow/hide protein sequence
MNMNWSGGDWMCGVCEHVNFKKREACQRCGYPKYGGPDPSTYEFNKTEVLAGDWYCHCGAHNYASRSSCYRCNAYKSADICALPGWKSGDWICNRIGCETHNYASRMECY
KCKTPRNFGGAV