CuGenDBv2

Gene ID	CmoCh12G012560
Organism	Cucurbita moschata Rifu (Cucurbita moschata (Rifu) v1)
Description	GDP-mannose transporter GONST4
Genome location	Cmo_Chr12:11132859..11139559
RNA-Seq Expression	CmoCh12G012560
Synteny	CmoCh12G012560
Gene Ontology terms	GO:0015783 - GDP-fucose transmembrane transport (biological process) GO:0005794 - Golgi apparatus (cellular component) GO:0016021 - integral component of membrane (cellular component) GO:0005457 - GDP-fucose transmembrane transporter activity (molecular function)
InterPro domains	IPR029663 - GDP-fucose transporter 1, plant

Homology

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GenBank top hits

e value

%identity

Alignment

GFY98307.1 golgi nucleotide sugar transporter 4 [Actinidia rufa]

1.2e-13

43.85

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Query:  RHFVTSTSILGREGDDDDDDGACLLVINKFAITKFNYPGL----------------------------------------GNQPCPSKLTFVSLLII--R
        +H+ TS+ ++G          + L VINKFAITKFNYPGL                                          QPCPSKLTF+SLLII   
Subjt:  RHFVTSTSILGREGDDDDDDGACLLVINKFAITKFNYPGL----------------------------------------GNQPCPSKLTFVSLLII--R

Query:  AVGHVATDSAFTLTACSWAFAYLVAISTEM
        +VG+VATDS FTLTA SWAFAYL+ I+TEM
Subjt:  AVGHVATDSAFTLTACSWAFAYLVAISTEM

RYR55148.1 hypothetical protein Ahy_A06g030395 isoform B [Arachis hypogaea]

8.8e-12

46.3

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Query:  LLVINKFAITKFNYPGL-----------------------------------------GNQPCPSKLTFVSLLII--RAVGHVATDSAFTLTACSWAFAY
        L +INK+AIT+FNYPGL                                          +QPCPSKLTF SL++I   AVG+V+TDSAFTLTA SWAFAY
Subjt:  LLVINKFAITKFNYPGL-----------------------------------------GNQPCPSKLTFVSLLII--RAVGHVATDSAFTLTACSWAFAY

Query:  LVAISTEM
        LV I+TEM
Subjt:  LVAISTEM

XP_015944467.1 GDP-fucose transporter 1 isoform X1 [Arachis duranensis]

8.8e-12

46.3

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Query:  LLVINKFAITKFNYPGL-----------------------------------------GNQPCPSKLTFVSLLII--RAVGHVATDSAFTLTACSWAFAY
        L +INK+AIT+FNYPGL                                          +QPCPSKLTF SL++I   AVG+V+TDSAFTLTA SWAFAY
Subjt:  LLVINKFAITKFNYPGL-----------------------------------------GNQPCPSKLTFVSLLII--RAVGHVATDSAFTLTACSWAFAY

Query:  LVAISTEM
        LV I+TEM
Subjt:  LVAISTEM

XP_020983664.1 GDP-fucose transporter 1 isoform X2 [Arachis duranensis]

8.8e-12

46.3

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Query:  LLVINKFAITKFNYPGL-----------------------------------------GNQPCPSKLTFVSLLII--RAVGHVATDSAFTLTACSWAFAY
        L +INK+AIT+FNYPGL                                          +QPCPSKLTF SL++I   AVG+V+TDSAFTLTA SWAFAY
Subjt:  LLVINKFAITKFNYPGL-----------------------------------------GNQPCPSKLTFVSLLII--RAVGHVATDSAFTLTACSWAFAY

Query:  LVAISTEM
        LV I+TEM
Subjt:  LVAISTEM

XP_020983667.1 GDP-fucose transporter 1 isoform X3 [Arachis duranensis]

8.8e-12

46.3

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Query:  LLVINKFAITKFNYPGL-----------------------------------------GNQPCPSKLTFVSLLII--RAVGHVATDSAFTLTACSWAFAY
        L +INK+AIT+FNYPGL                                          +QPCPSKLTF SL++I   AVG+V+TDSAFTLTA SWAFAY
Subjt:  LLVINKFAITKFNYPGL-----------------------------------------GNQPCPSKLTFVSLLII--RAVGHVATDSAFTLTACSWAFAY

Query:  LVAISTEM
        LV I+TEM
Subjt:  LVAISTEM

TrEMBL top hits

e value

%identity

Alignment

A0A445CW44 Uncharacterized protein

4.3e-12

46.3

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Query:  LLVINKFAITKFNYPGL-----------------------------------------GNQPCPSKLTFVSLLII--RAVGHVATDSAFTLTACSWAFAY
        L +INK+AIT+FNYPGL                                          +QPCPSKLTF SL++I   AVG+V+TDSAFTLTA SWAFAY
Subjt:  LLVINKFAITKFNYPGL-----------------------------------------GNQPCPSKLTFVSLLII--RAVGHVATDSAFTLTACSWAFAY

Query:  LVAISTEM
        LV I+TEM
Subjt:  LVAISTEM

A0A6P4BWQ2 GDP-fucose transporter 1 isoform X1

4.3e-12

46.3

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Query:  LLVINKFAITKFNYPGL-----------------------------------------GNQPCPSKLTFVSLLII--RAVGHVATDSAFTLTACSWAFAY
        L +INK+AIT+FNYPGL                                          +QPCPSKLTF SL++I   AVG+V+TDSAFTLTA SWAFAY
Subjt:  LLVINKFAITKFNYPGL-----------------------------------------GNQPCPSKLTFVSLLII--RAVGHVATDSAFTLTACSWAFAY

Query:  LVAISTEM
        LV I+TEM
Subjt:  LVAISTEM

A0A6P5MEI5 GDP-fucose transporter 1 isoform X2

4.3e-12

46.3

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Query:  LLVINKFAITKFNYPGL-----------------------------------------GNQPCPSKLTFVSLLII--RAVGHVATDSAFTLTACSWAFAY
        L +INK+AIT+FNYPGL                                          +QPCPSKLTF SL++I   AVG+V+TDSAFTLTA SWAFAY
Subjt:  LLVINKFAITKFNYPGL-----------------------------------------GNQPCPSKLTFVSLLII--RAVGHVATDSAFTLTACSWAFAY

Query:  LVAISTEM
        LV I+TEM
Subjt:  LVAISTEM

A0A6P5MEP8 GDP-fucose transporter 1 isoform X3

4.3e-12

46.3

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Query:  LLVINKFAITKFNYPGL-----------------------------------------GNQPCPSKLTFVSLLII--RAVGHVATDSAFTLTACSWAFAY
        L +INK+AIT+FNYPGL                                          +QPCPSKLTF SL++I   AVG+V+TDSAFTLTA SWAFAY
Subjt:  LLVINKFAITKFNYPGL-----------------------------------------GNQPCPSKLTFVSLLII--RAVGHVATDSAFTLTACSWAFAY

Query:  LVAISTEM
        LV I+TEM
Subjt:  LVAISTEM

A0A7J0FK70 Golgi nucleotide sugar transporter 4

6.0e-14

43.85

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Query:  RHFVTSTSILGREGDDDDDDGACLLVINKFAITKFNYPGL----------------------------------------GNQPCPSKLTFVSLLII--R
        +H+ TS+ ++G          + L VINKFAITKFNYPGL                                          QPCPSKLTF+SLLII   
Subjt:  RHFVTSTSILGREGDDDDDDGACLLVINKFAITKFNYPGL----------------------------------------GNQPCPSKLTFVSLLII--R

Query:  AVGHVATDSAFTLTACSWAFAYLVAISTEM
        +VG+VATDS FTLTA SWAFAYL+ I+TEM
Subjt:  AVGHVATDSAFTLTACSWAFAYLVAISTEM

SwissProt top hits

e value

%identity

Alignment

Q84L08 GDP-fucose transporter 1

6.6e-10

69.39

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Query:  NQPCPSKLTFVSLLII--RAVGHVATDSAFTLTACSWAFAYLVAISTEM
        +QP PS+LTF+SL++I   AVG+VATDS+FTLTA SWA AYLV I+TEM
Subjt:  NQPCPSKLTFVSLLII--RAVGHVATDSAFTLTACSWAFAYLVAISTEM

Arabidopsis top hits

e value

%identity

Alignment

AT5G19980.1 golgi nucleotide sugar transporter 4

4.7e-11

69.39

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Query:  NQPCPSKLTFVSLLII--RAVGHVATDSAFTLTACSWAFAYLVAISTEM
        +QP PS+LTF+SL++I   AVG+VATDS+FTLTA SWA AYLV I+TEM
Subjt:  NQPCPSKLTFVSLLII--RAVGHVATDSAFTLTACSWAFAYLVAISTEM

Sequences

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CDS sequence

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ATGGTTGTCGTTTCTAAGCCCATTGATTCAACGATGAAAAATCTCGTGCACGGAACTGTCGAACATAGACACTTTGTTACGTCAACATCTATCTTAGGACGAGAAGGAGA
CGACGACGACGACGATGGAGCTTGCTTGCTTGTGATAAACAAGTTTGCCATTACCAAATTTAACTATCCTGGCCTTGGAAACCAGCCATGTCCATCTAAGCTCACATTTG
TGTCATTGCTGATAATTAGAGCAGTTGGGCATGTGGCTACAGATTCTGCATTTACTTTGACTGCTTGTTCATGGGCGTTTGCTTATTTGGTGGCTATTAGTACTGAGATG
TATCCTAATCTTGTATATTTGGTTTTGCTGCAAGAAAAGCCATTTCTGCTACTGCTTTCACAGTTAATGGTGTGGTTTGGTCTGCCTCCTTTTCACAATTTCAGGTGGTG
TTCTCTATCAGCAGTCAGCAACAACAGGAGTGAGAAGCGTCTCAGCAACAAGAAATGA

mRNA sequence

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Protein sequence

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MVVVSKPIDSTMKNLVHGTVEHRHFVTSTSILGREGDDDDDDGACLLVINKFAITKFNYPGLGNQPCPSKLTFVSLLIIRAVGHVATDSAFTLTACSWAFAYLVAISTEM
YPNLVYLVLLQEKPFLLLLSQLMVWFGLPPFHNFRWCSLSAVSNNRSEKRLSNKK

CmoCh12G012560 (gene) of Cucurbita moschata (Rifu) v1 genome