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CmoCh12G012690 (gene) of Cucurbita moschata (Rifu) v1 genome

Gene IDCmoCh12G012690
OrganismCucurbita moschata Rifu (Cucurbita moschata (Rifu) v1)
Descriptionserine incorporator 3-like isoform X3
Genome locationCmo_Chr12:11252855..11256432
RNA-Seq ExpressionCmoCh12G012690
SyntenyCmoCh12G012690
Gene Ontology termsGO:0016021 - integral component of membrane (cellular component)
InterPro domainsIPR005016 - Serine incorporator/TMS membrane protein


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG7021277.1 putative serine incorporator [Cucurbita argyrosperma subsp. argyrosperma]9.5e-4698.89Show/hide
Query:  METSGGGSSVQGSCIFKADTWCSQFRNWSNPWMARYIYALMFLIANLLAWAVRDYGRGALTEMERLKGCHGARDCLGAEGVLRVSLGCFV
        METSGGGSSVQGSCIFKADTWCSQFRNWSNPWMARYIYALMFLIANLLAWAVRDYGRGALTEMERLKGCHGARDCLGAEGVLRVSLGCF+
Subjt:  METSGGGSSVQGSCIFKADTWCSQFRNWSNPWMARYIYALMFLIANLLAWAVRDYGRGALTEMERLKGCHGARDCLGAEGVLRVSLGCFV

XP_022937446.1 probable serine incorporator isoform X1 [Cucurbita moschata]9.5e-4698.89Show/hide
Query:  METSGGGSSVQGSCIFKADTWCSQFRNWSNPWMARYIYALMFLIANLLAWAVRDYGRGALTEMERLKGCHGARDCLGAEGVLRVSLGCFV
        METSGGGSSVQGSCIFKADTWCSQFRNWSNPWMARYIYALMFLIANLLAWAVRDYGRGALTEMERLKGCHGARDCLGAEGVLRVSLGCF+
Subjt:  METSGGGSSVQGSCIFKADTWCSQFRNWSNPWMARYIYALMFLIANLLAWAVRDYGRGALTEMERLKGCHGARDCLGAEGVLRVSLGCFV

XP_022937448.1 probable serine incorporator isoform X2 [Cucurbita moschata]9.5e-4698.89Show/hide
Query:  METSGGGSSVQGSCIFKADTWCSQFRNWSNPWMARYIYALMFLIANLLAWAVRDYGRGALTEMERLKGCHGARDCLGAEGVLRVSLGCFV
        METSGGGSSVQGSCIFKADTWCSQFRNWSNPWMARYIYALMFLIANLLAWAVRDYGRGALTEMERLKGCHGARDCLGAEGVLRVSLGCF+
Subjt:  METSGGGSSVQGSCIFKADTWCSQFRNWSNPWMARYIYALMFLIANLLAWAVRDYGRGALTEMERLKGCHGARDCLGAEGVLRVSLGCFV

XP_023537491.1 probable serine incorporator isoform X1 [Cucurbita pepo subsp. pepo]9.5e-4698.89Show/hide
Query:  METSGGGSSVQGSCIFKADTWCSQFRNWSNPWMARYIYALMFLIANLLAWAVRDYGRGALTEMERLKGCHGARDCLGAEGVLRVSLGCFV
        METSGGGSSVQGSCIFKADTWCSQFRNWSNPWMARYIYALMFLIANLLAWAVRDYGRGALTEMERLKGCHGARDCLGAEGVLRVSLGCF+
Subjt:  METSGGGSSVQGSCIFKADTWCSQFRNWSNPWMARYIYALMFLIANLLAWAVRDYGRGALTEMERLKGCHGARDCLGAEGVLRVSLGCFV

XP_023537494.1 probable serine incorporator isoform X2 [Cucurbita pepo subsp. pepo]9.5e-4698.89Show/hide
Query:  METSGGGSSVQGSCIFKADTWCSQFRNWSNPWMARYIYALMFLIANLLAWAVRDYGRGALTEMERLKGCHGARDCLGAEGVLRVSLGCFV
        METSGGGSSVQGSCIFKADTWCSQFRNWSNPWMARYIYALMFLIANLLAWAVRDYGRGALTEMERLKGCHGARDCLGAEGVLRVSLGCF+
Subjt:  METSGGGSSVQGSCIFKADTWCSQFRNWSNPWMARYIYALMFLIANLLAWAVRDYGRGALTEMERLKGCHGARDCLGAEGVLRVSLGCFV

TrEMBL top hitse value%identityAlignment
A0A6J1FAD2 probable serine incorporator isoform X14.6e-4698.89Show/hide
Query:  METSGGGSSVQGSCIFKADTWCSQFRNWSNPWMARYIYALMFLIANLLAWAVRDYGRGALTEMERLKGCHGARDCLGAEGVLRVSLGCFV
        METSGGGSSVQGSCIFKADTWCSQFRNWSNPWMARYIYALMFLIANLLAWAVRDYGRGALTEMERLKGCHGARDCLGAEGVLRVSLGCF+
Subjt:  METSGGGSSVQGSCIFKADTWCSQFRNWSNPWMARYIYALMFLIANLLAWAVRDYGRGALTEMERLKGCHGARDCLGAEGVLRVSLGCFV

A0A6J1FG29 probable serine incorporator isoform X24.6e-4698.89Show/hide
Query:  METSGGGSSVQGSCIFKADTWCSQFRNWSNPWMARYIYALMFLIANLLAWAVRDYGRGALTEMERLKGCHGARDCLGAEGVLRVSLGCFV
        METSGGGSSVQGSCIFKADTWCSQFRNWSNPWMARYIYALMFLIANLLAWAVRDYGRGALTEMERLKGCHGARDCLGAEGVLRVSLGCF+
Subjt:  METSGGGSSVQGSCIFKADTWCSQFRNWSNPWMARYIYALMFLIANLLAWAVRDYGRGALTEMERLKGCHGARDCLGAEGVLRVSLGCFV

A0A6J1HPP8 probable serine incorporator isoform X22.5e-4495.56Show/hide
Query:  METSGGGSSVQGSCIFKADTWCSQFRNWSNPWMARYIYALMFLIANLLAWAVRDYGRGALTEMERLKGCHGARDCLGAEGVLRVSLGCFV
        METSGGGSSV+ SCIFKADTWCSQFRNWSNPWMARYIYAL+FLIANLLAWAVRDYGRGALTEMERLKGCHGARDCLGAEGVLRVSLGCF+
Subjt:  METSGGGSSVQGSCIFKADTWCSQFRNWSNPWMARYIYALMFLIANLLAWAVRDYGRGALTEMERLKGCHGARDCLGAEGVLRVSLGCFV

A0A6J1HRX3 probable serine incorporator isoform X12.5e-4495.56Show/hide
Query:  METSGGGSSVQGSCIFKADTWCSQFRNWSNPWMARYIYALMFLIANLLAWAVRDYGRGALTEMERLKGCHGARDCLGAEGVLRVSLGCFV
        METSGGGSSV+ SCIFKADTWCSQFRNWSNPWMARYIYAL+FLIANLLAWAVRDYGRGALTEMERLKGCHGARDCLGAEGVLRVSLGCF+
Subjt:  METSGGGSSVQGSCIFKADTWCSQFRNWSNPWMARYIYALMFLIANLLAWAVRDYGRGALTEMERLKGCHGARDCLGAEGVLRVSLGCFV

A0A6J1KFJ6 probable serine incorporator isoform X12.9e-4091.11Show/hide
Query:  METSGGGSSVQGSCIFKADTWCSQFRNWSNPWMARYIYALMFLIANLLAWAVRDYGRGALTEMERLKGCHGARDCLGAEGVLRVSLGCFV
        METS GGSS +G  IFK DTWCSQFRN SNPWMARYIYALMFLIANLLAWAVRDYGRGALTEMERLKGCHGARDCLGAEGVLRVSLGCF+
Subjt:  METSGGGSSVQGSCIFKADTWCSQFRNWSNPWMARYIYALMFLIANLLAWAVRDYGRGALTEMERLKGCHGARDCLGAEGVLRVSLGCFV

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
AT2G33205.1 Serinc-domain containing serine and sphingolipid biosynthesis protein9.9e-0950.85Show/hide
Query:  ARYIYALMFLIANLLAWAVRDYGRGALTEMERLKGC--HGARDCLGAEGVLRVSLGCFV
        ARY Y  +FLI NL AW +RDY + AL  +  +  C   G+R C    GVLRVSLGCF+
Subjt:  ARYIYALMFLIANLLAWAVRDYGRGALTEMERLKGC--HGARDCLGAEGVLRVSLGCFV

AT3G24460.1 Serinc-domain containing serine and sphingolipid biosynthesis protein5.2e-2667.57Show/hide
Query:  KADTWCSQFRNWSNPWMARYIYALMFLIANLLAWAVRDYGRGALTEMERLKGCHGARDCLGAEGVLRVSLGCFV
        K  +W +QFRN  NPWMARY+Y L+FLIANLLAWA RDYGRGAL ++ R K C G  +CLG +GVLRVSLGCF+
Subjt:  KADTWCSQFRNWSNPWMARYIYALMFLIANLLAWAVRDYGRGALTEMERLKGCHGARDCLGAEGVLRVSLGCFV

AT4G13345.1 Serinc-domain containing serine and sphingolipid biosynthesis protein3.1e-2668.92Show/hide
Query:  KADTWCSQFRNWSNPWMARYIYALMFLIANLLAWAVRDYGRGALTEMERLKGCHGARDCLGAEGVLRVSLGCFV
        K  +W  QFRN  NPWMARY+Y L+FL+ANLLAWA+RDYGRGALTEM + K C    DCLG EGVLRVS GCF+
Subjt:  KADTWCSQFRNWSNPWMARYIYALMFLIANLLAWAVRDYGRGALTEMERLKGCHGARDCLGAEGVLRVSLGCFV

AT4G13345.2 Serinc-domain containing serine and sphingolipid biosynthesis protein3.1e-2668.92Show/hide
Query:  KADTWCSQFRNWSNPWMARYIYALMFLIANLLAWAVRDYGRGALTEMERLKGCHGARDCLGAEGVLRVSLGCFV
        K  +W  QFRN  NPWMARY+Y L+FL+ANLLAWA+RDYGRGALTEM + K C    DCLG EGVLRVS GCF+
Subjt:  KADTWCSQFRNWSNPWMARYIYALMFLIANLLAWAVRDYGRGALTEMERLKGCHGARDCLGAEGVLRVSLGCFV


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGAGACAAGCGGCGGAGGAAGCTCCGTTCAGGGGAGCTGCATATTTAAGGCTGATACATGGTGTAGCCAATTTCGTAATTGGTCCAATCCTTGGATGGCAAGATACAT
TTACGCTTTGATGTTTCTAATTGCTAATTTGTTGGCATGGGCTGTCCGGGATTATGGCCGTGGCGCCTTGACAGAGATGGAAAGATTAAAAGGATGTCACGGAGCGCGTG
ATTGTCTAGGTGCTGAAGGAGTTCTTCGTGTGAGCTTGGGTTGCTTTGTATCCTTGACTGAATCAGCTGTGTTTTGA
mRNA sequenceShow/hide mRNA sequence
AAGAAACAGAGCACACAACGCAAAGCAAGCCTTCGTAAAAGCAATCTCTCTTTCTCTCTTCCATTCTGTATAAATTCAACTCCCAAACACCTTAAGCGAATTCCAGATTC
TCTCTCTCTCTGCTTCCAATCTTCGTTCTGGAAGGATTTTGATGCACAACTTTACAGGAGGAAGGAGGCGGAAGTTCAACCTTCTGCACTAACGTTTCCAATCACTCCAA
TCTTCTTATCTCGAGTTCGGTAACTGGATCCGTAGCAGGGAAGTGAAGCAAGCAGGACAGAAAATCCAGTTTGATTATACTATGCAACCAGAAATGGACGAAATGTAGTC
TGGCTTTAGTAGACATGGAGACAAGCGGCGGAGGAAGCTCCGTTCAGGGGAGCTGCATATTTAAGGCTGATACATGGTGTAGCCAATTTCGTAATTGGTCCAATCCTTGG
ATGGCAAGATACATTTACGCTTTGATGTTTCTAATTGCTAATTTGTTGGCATGGGCTGTCCGGGATTATGGCCGTGGCGCCTTGACAGAGATGGAAAGATTAAAAGGATG
TCACGGAGCGCGTGATTGTCTAGGTGCTGAAGGAGTTCTTCGTGTGAGCTTGGGTTGCTTTGTATCCTTGACTGAATCAGCTGTGTTTTGA
Protein sequenceShow/hide protein sequence
METSGGGSSVQGSCIFKADTWCSQFRNWSNPWMARYIYALMFLIANLLAWAVRDYGRGALTEMERLKGCHGARDCLGAEGVLRVSLGCFVSLTESAVF