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CmoCh12G012760 (gene) of Cucurbita moschata (Rifu) v1 genome

Gene IDCmoCh12G012760
OrganismCucurbita moschata Rifu (Cucurbita moschata (Rifu) v1)
DescriptionArabinogalactan protein 22, putative
Genome locationCmo_Chr12:11301616..11302708
RNA-Seq ExpressionCmoCh12G012760
SyntenyCmoCh12G012760
Gene Ontology termsGO:0016021 - integral component of membrane (cellular component)
InterPro domainsIPR009424 - Arabinogalactan protein 16/20/22/41


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0061559.1 putative Arabinogalactan protein 22 [Cucumis melo var. makuwa]2.2e-1980.95Show/hide
Query:  MSPMKLTAVPIVGFVFLILLQLAYGHSHDISPAAGPSSDGAAIDQGIAYVLLMVALAVTYIFH
        MS +KLTAVP VGF+FLI+LQLA+GHSHDISPA GPS+DGAAIDQGIAYVLL++ALA+TYI H
Subjt:  MSPMKLTAVPIVGFVFLILLQLAYGHSHDISPAAGPSSDGAAIDQGIAYVLLMVALAVTYIFH

KDP33656.1 hypothetical protein JCGZ_07227 [Jatropha curcas]3.1e-1370.31Show/hide
Query:  MSPMKLTAVPIVGFVFLILLQLAYGHSHDISPAA-GPSSDGAAIDQGIAYVLLMVALAVTYIFH
        MSPM L A+PI+GF+FL LLQL +G +   SPAA GPSSDG  IDQGIAYVL++VALAVTY+FH
Subjt:  MSPMKLTAVPIVGFVFLILLQLAYGHSHDISPAA-GPSSDGAAIDQGIAYVLLMVALAVTYIFH

KGN60622.1 hypothetical protein Csa_019490 [Cucumis sativus]2.6e-2085.71Show/hide
Query:  MSPMKLTAVPIVGFVFLILLQLAYGHSHDISPAAGPSSDGAAIDQGIAYVLLMVALAVTYIFH
        MS +KLTAVPIVGF+FLI+LQLA+GHSHDISPAAGPS+DGAAIDQGIAYVLL++ALAVTYI H
Subjt:  MSPMKLTAVPIVGFVFLILLQLAYGHSHDISPAAGPSSDGAAIDQGIAYVLLMVALAVTYIFH

OAY53733.1 hypothetical protein MANES_03G019400v8 [Manihot esculenta]5.8e-1265.62Show/hide
Query:  MSPMKLTAVPIVGFVFLILLQLAYGHSHDISPA-AGPSSDGAAIDQGIAYVLLMVALAVTYIFH
        MSPMKL  +PI+G VFL L+QL+YG     SPA  GPSSDG AIDQGIA++L++VALAVTY+ H
Subjt:  MSPMKLTAVPIVGFVFLILLQLAYGHSHDISPA-AGPSSDGAAIDQGIAYVLLMVALAVTYIFH

RQP02858.1 hypothetical protein POPTR_018G078801 [Populus trichocarpa]3.4e-1261.9Show/hide
Query:  MSPMKLTAVPIVGFVFLILLQLAYGHSHDISPAAGPSSDGAAIDQGIAYVLLMVALAVTYIFH
        MS M+L A+PI+GF+FL LL+  +G     SPA GP++DG  IDQGIAYVLLM+ALA+TY+FH
Subjt:  MSPMKLTAVPIVGFVFLILLQLAYGHSHDISPAAGPSSDGAAIDQGIAYVLLMVALAVTYIFH

TrEMBL top hitse value%identityAlignment
A0A067KBQ4 Uncharacterized protein1.5e-1370.31Show/hide
Query:  MSPMKLTAVPIVGFVFLILLQLAYGHSHDISPAA-GPSSDGAAIDQGIAYVLLMVALAVTYIFH
        MSPM L A+PI+GF+FL LLQL +G +   SPAA GPSSDG  IDQGIAYVL++VALAVTY+FH
Subjt:  MSPMKLTAVPIVGFVFLILLQLAYGHSHDISPAA-GPSSDGAAIDQGIAYVLLMVALAVTYIFH

A0A0A0LIU0 Uncharacterized protein1.3e-2085.71Show/hide
Query:  MSPMKLTAVPIVGFVFLILLQLAYGHSHDISPAAGPSSDGAAIDQGIAYVLLMVALAVTYIFH
        MS +KLTAVPIVGF+FLI+LQLA+GHSHDISPAAGPS+DGAAIDQGIAYVLL++ALAVTYI H
Subjt:  MSPMKLTAVPIVGFVFLILLQLAYGHSHDISPAAGPSSDGAAIDQGIAYVLLMVALAVTYIFH

A0A2C9W3S5 Uncharacterized protein2.8e-1265.62Show/hide
Query:  MSPMKLTAVPIVGFVFLILLQLAYGHSHDISPA-AGPSSDGAAIDQGIAYVLLMVALAVTYIFH
        MSPMKL  +PI+G VFL L+QL+YG     SPA  GPSSDG AIDQGIA++L++VALAVTY+ H
Subjt:  MSPMKLTAVPIVGFVFLILLQLAYGHSHDISPA-AGPSSDGAAIDQGIAYVLLMVALAVTYIFH

A0A3N7G6R6 Uncharacterized protein1.7e-1261.9Show/hide
Query:  MSPMKLTAVPIVGFVFLILLQLAYGHSHDISPAAGPSSDGAAIDQGIAYVLLMVALAVTYIFH
        MS M+L A+PI+GF+FL LL+  +G     SPA GP++DG  IDQGIAYVLLM+ALA+TY+FH
Subjt:  MSPMKLTAVPIVGFVFLILLQLAYGHSHDISPAAGPSSDGAAIDQGIAYVLLMVALAVTYIFH

A0A5A7V7C0 Putative Arabinogalactan protein 221.1e-1980.95Show/hide
Query:  MSPMKLTAVPIVGFVFLILLQLAYGHSHDISPAAGPSSDGAAIDQGIAYVLLMVALAVTYIFH
        MS +KLTAVP VGF+FLI+LQLA+GHSHDISPA GPS+DGAAIDQGIAYVLL++ALA+TYI H
Subjt:  MSPMKLTAVPIVGFVFLILLQLAYGHSHDISPAAGPSSDGAAIDQGIAYVLLMVALAVTYIFH

SwissProt top hitse value%identityAlignment
O82337 Arabinogalactan protein 169.1e-0846.88Show/hide
Query:  MMSPMKLTAVPIVGFVFLILLQLAYGHSHDISPAAGPSSDGAAIDQGIAYVLLMVALAVTYIFH
        M S   +T   +  FVF ++L LA   S  ++PA  P+SDG +IDQGIAY+L++VAL +TY+ H
Subjt:  MMSPMKLTAVPIVGFVFLILLQLAYGHSHDISPAAGPSSDGAAIDQGIAYVLLMVALAVTYIFH

Q8L9T8 Arabinogalactan protein 414.1e-0854.72Show/hide
Query:  IVGFVFLILLQLAYGHSHDISPAAGPSSDGAAIDQGIAYVLLMVALAVTYIFH
        IV  +F ILL +A  H+   +PA  P+SDG  IDQGIAYVL++VAL +TY+ H
Subjt:  IVGFVFLILLQLAYGHSHDISPAAGPSSDGAAIDQGIAYVLLMVALAVTYIFH

Q9FK16 Arabinogalactan protein 226.3e-0949.21Show/hide
Query:  MSPMKLTAVPIVGFVFLILLQLAYGHSHDISPAAGPSSDGAAIDQGIAYVLLMVALAVTYIFH
        M+ +K     +  FV + ++ L    SH  SPA  P+SDG +IDQGIAYVL+MVALA+TY  H
Subjt:  MSPMKLTAVPIVGFVFLILLQLAYGHSHDISPAAGPSSDGAAIDQGIAYVLLMVALAVTYIFH

Q9M373 Arabinogalactan protein 202.2e-0642.19Show/hide
Query:  MMSPMKLTAVPIVGFVFLILLQLAYGHSHDISPAAGPSSDGAAIDQGIAYVLLMVALAVTYIFH
        M S   +  + +  FVF ++   A   S  ++PA  P+SDG +IDQGIAY+L++VAL +TY+ H
Subjt:  MMSPMKLTAVPIVGFVFLILLQLAYGHSHDISPAAGPSSDGAAIDQGIAYVLLMVALAVTYIFH

Arabidopsis top hitse value%identityAlignment
AT2G46330.1 arabinogalactan protein 166.5e-0946.88Show/hide
Query:  MMSPMKLTAVPIVGFVFLILLQLAYGHSHDISPAAGPSSDGAAIDQGIAYVLLMVALAVTYIFH
        M S   +T   +  FVF ++L LA   S  ++PA  P+SDG +IDQGIAY+L++VAL +TY+ H
Subjt:  MMSPMKLTAVPIVGFVFLILLQLAYGHSHDISPAAGPSSDGAAIDQGIAYVLLMVALAVTYIFH

AT3G61640.1 arabinogalactan protein 201.6e-0742.19Show/hide
Query:  MMSPMKLTAVPIVGFVFLILLQLAYGHSHDISPAAGPSSDGAAIDQGIAYVLLMVALAVTYIFH
        M S   +  + +  FVF ++   A   S  ++PA  P+SDG +IDQGIAY+L++VAL +TY+ H
Subjt:  MMSPMKLTAVPIVGFVFLILLQLAYGHSHDISPAAGPSSDGAAIDQGIAYVLLMVALAVTYIFH

AT5G24105.1 arabinogalactan protein 412.9e-0954.72Show/hide
Query:  IVGFVFLILLQLAYGHSHDISPAAGPSSDGAAIDQGIAYVLLMVALAVTYIFH
        IV  +F ILL +A  H+   +PA  P+SDG  IDQGIAYVL++VAL +TY+ H
Subjt:  IVGFVFLILLQLAYGHSHDISPAAGPSSDGAAIDQGIAYVLLMVALAVTYIFH

AT5G53250.1 arabinogalactan protein 224.5e-1049.21Show/hide
Query:  MSPMKLTAVPIVGFVFLILLQLAYGHSHDISPAAGPSSDGAAIDQGIAYVLLMVALAVTYIFH
        M+ +K     +  FV + ++ L    SH  SPA  P+SDG +IDQGIAYVL+MVALA+TY  H
Subjt:  MSPMKLTAVPIVGFVFLILLQLAYGHSHDISPAAGPSSDGAAIDQGIAYVLLMVALAVTYIFH


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGATGAGTCCGATGAAGCTAACAGCCGTTCCGATCGTCGGCTTCGTGTTCTTGATTCTTCTGCAATTGGCTTACGGTCACTCCCACGATATTTCCCCGGCGGCGGGTCC
TTCGAGCGACGGCGCTGCAATTGACCAAGGAATTGCTTACGTTCTTCTTATGGTTGCTCTCGCGGTTACCTACATTTTCCATTGA
mRNA sequenceShow/hide mRNA sequence
ATGATGAGTCCGATGAAGCTAACAGCCGTTCCGATCGTCGGCTTCGTGTTCTTGATTCTTCTGCAATTGGCTTACGGTCACTCCCACGATATTTCCCCGGCGGCGGGTCC
TTCGAGCGACGGCGCTGCAATTGACCAAGGAATTGCTTACGTTCTTCTTATGGTTGCTCTCGCGGTTACCTACATTTTCCATTGATAATTCTTACGGCGTTTGGATATGT
AATTTTTATTTTATTTTGTAGTTTTTTCTCCGTTTATTGGTGAAGAAATTGCTATTATAATACTTGAAATTCATTATTCTTTATTTACTTATAAATATAATTTGCTTTGT
TAATTAGGGGATAATATAGCTTTTGCCACGTGTTACAATCTAATTAAATCTAATTAAATCAAATTAATTGTAATTTTAAAAATTGAGCTGATAATATTACTCTTCACTAC
TACATTTTATTATTTTGAAAAATTGAGAAAGTGAGATGGGAG
Protein sequenceShow/hide protein sequence
MMSPMKLTAVPIVGFVFLILLQLAYGHSHDISPAAGPSSDGAAIDQGIAYVLLMVALAVTYIFH