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CmoCh12G012870 (gene) of Cucurbita moschata (Rifu) v1 genome

Gene IDCmoCh12G012870
OrganismCucurbita moschata Rifu (Cucurbita moschata (Rifu) v1)
DescriptionProtein NUCLEAR FUSION DEFECTIVE 6
Genome locationCmo_Chr12:11360629..11363049
RNA-Seq ExpressionCmoCh12G012870
SyntenyCmoCh12G012870
Gene Ontology termsNA
InterPro domainsIPR043459 - NFD6/NOXY2-like


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG6586435.1 hypothetical protein SDJN03_19168, partial [Cucurbita argyrosperma subsp. sororia]1.5e-3897.98Show/hide
Query:  MASLKAVSRLSSRLHSLASKLNKRSSSSDQSPFKSTRQSRLSAPSTSRLSCTSRLPLELSSQGSLMPLHSAIAAARLISSLAIESRGWGLVPQGISMPL
        MASLKAVSRLSSRLHSLASKLNKRSSSSDQSPFKST QSRLSAPSTSRLSCTSRLPLELSSQGSLMPLHSAI+AARLISSLAIESRGWGLVPQGISMPL
Subjt:  MASLKAVSRLSSRLHSLASKLNKRSSSSDQSPFKSTRQSRLSAPSTSRLSCTSRLPLELSSQGSLMPLHSAIAAARLISSLAIESRGWGLVPQGISMPL

KAG7021289.1 hypothetical protein SDJN02_17977 [Cucurbita argyrosperma subsp. argyrosperma]6.6e-3998.99Show/hide
Query:  MASLKAVSRLSSRLHSLASKLNKRSSSSDQSPFKSTRQSRLSAPSTSRLSCTSRLPLELSSQGSLMPLHSAIAAARLISSLAIESRGWGLVPQGISMPL
        MASLKAVSRLSSRLHSLASKLNKRSSSSDQSPFKST QSRLSAPSTSRLSCTSRLPLELSSQGSLMPLHSAIAAARLISSLAIESRGWGLVPQGISMPL
Subjt:  MASLKAVSRLSSRLHSLASKLNKRSSSSDQSPFKSTRQSRLSAPSTSRLSCTSRLPLELSSQGSLMPLHSAIAAARLISSLAIESRGWGLVPQGISMPL

XP_022938270.1 uncharacterized protein LOC111444407 [Cucurbita moschata]7.9e-40100Show/hide
Query:  MASLKAVSRLSSRLHSLASKLNKRSSSSDQSPFKSTRQSRLSAPSTSRLSCTSRLPLELSSQGSLMPLHSAIAAARLISSLAIESRGWGLVPQGISMPL
        MASLKAVSRLSSRLHSLASKLNKRSSSSDQSPFKSTRQSRLSAPSTSRLSCTSRLPLELSSQGSLMPLHSAIAAARLISSLAIESRGWGLVPQGISMPL
Subjt:  MASLKAVSRLSSRLHSLASKLNKRSSSSDQSPFKSTRQSRLSAPSTSRLSCTSRLPLELSSQGSLMPLHSAIAAARLISSLAIESRGWGLVPQGISMPL

XP_022966032.1 uncharacterized protein LOC111465737 [Cucurbita maxima]8.1e-3793.94Show/hide
Query:  MASLKAVSRLSSRLHSLASKLNKRSSSSDQSPFKSTRQSRLSAPSTSRLSCTSRLPLELSSQGSLMPLHSAIAAARLISSLAIESRGWGLVPQGISMPL
        MASL+AVSR+SSRLHSLASKLNKRSSSSD SPFKST QSRLSAPSTSRLSCTSRLPLELSSQGSLMPLHSAIA+ARLISSL IESRGWGLVPQGISMPL
Subjt:  MASLKAVSRLSSRLHSLASKLNKRSSSSDQSPFKSTRQSRLSAPSTSRLSCTSRLPLELSSQGSLMPLHSAIAAARLISSLAIESRGWGLVPQGISMPL

XP_023538189.1 uncharacterized protein LOC111799036 [Cucurbita pepo subsp. pepo]7.4e-3896.97Show/hide
Query:  MASLKAVSRLSSRLHSLASKLNKRSSSSDQSPFKSTRQSRLSAPSTSRLSCTSRLPLELSSQGSLMPLHSAIAAARLISSLAIESRGWGLVPQGISMPL
        MASLKAVSRLSSRLHSLASKLNKRSSSSD SPFKST QSRLSAPSTSRLSCTSRLPLELSSQGSLMPLHSAIA+ARLISSLAIESRGWGLVPQGISMPL
Subjt:  MASLKAVSRLSSRLHSLASKLNKRSSSSDQSPFKSTRQSRLSAPSTSRLSCTSRLPLELSSQGSLMPLHSAIAAARLISSLAIESRGWGLVPQGISMPL

TrEMBL top hitse value%identityAlignment
A0A6J1DYI4 uncharacterized protein LOC1110242173.2e-3184.85Show/hide
Query:  MASLKAVSRLSSRLHSLASKLNKRSSSSDQSPFKSTRQSRLSAPSTSRLSCTSRLPLELSSQGSLMPLHSAIAAARLISSLAIESRGWGLVPQGISMPL
        MASLKAVSRLSSRLHSLA KL K+  SS+ SP KS+ QS+ SA STSR+SCTSRLPLELSSQGSLMPLHSAIAAARLISSL IESRGWGLVPQGISMPL
Subjt:  MASLKAVSRLSSRLHSLASKLNKRSSSSDQSPFKSTRQSRLSAPSTSRLSCTSRLPLELSSQGSLMPLHSAIAAARLISSLAIESRGWGLVPQGISMPL

A0A6J1FCN7 uncharacterized protein LOC1114444073.8e-40100Show/hide
Query:  MASLKAVSRLSSRLHSLASKLNKRSSSSDQSPFKSTRQSRLSAPSTSRLSCTSRLPLELSSQGSLMPLHSAIAAARLISSLAIESRGWGLVPQGISMPL
        MASLKAVSRLSSRLHSLASKLNKRSSSSDQSPFKSTRQSRLSAPSTSRLSCTSRLPLELSSQGSLMPLHSAIAAARLISSLAIESRGWGLVPQGISMPL
Subjt:  MASLKAVSRLSSRLHSLASKLNKRSSSSDQSPFKSTRQSRLSAPSTSRLSCTSRLPLELSSQGSLMPLHSAIAAARLISSLAIESRGWGLVPQGISMPL

A0A6J1G399 uncharacterized protein LOC1114503801.4e-3185.86Show/hide
Query:  MASLKAVSRLSSRLHSLASKLNKRSSSSDQSPFKSTRQSRLSAPSTSRLSCTSRLPLELSSQGSLMPLHSAIAAARLISSLAIESRGWGLVPQGISMPL
        MASL+AVSRLSSRL SLA KLNKRS SS+ SPFKS  QS+ SA STSR+SCTSRLPLELSSQGSLMPLHSAIAAARLISSL+IES+GWGLVPQGISMPL
Subjt:  MASLKAVSRLSSRLHSLASKLNKRSSSSDQSPFKSTRQSRLSAPSTSRLSCTSRLPLELSSQGSLMPLHSAIAAARLISSLAIESRGWGLVPQGISMPL

A0A6J1HLX3 uncharacterized protein LOC1114657373.9e-3793.94Show/hide
Query:  MASLKAVSRLSSRLHSLASKLNKRSSSSDQSPFKSTRQSRLSAPSTSRLSCTSRLPLELSSQGSLMPLHSAIAAARLISSLAIESRGWGLVPQGISMPL
        MASL+AVSR+SSRLHSLASKLNKRSSSSD SPFKST QSRLSAPSTSRLSCTSRLPLELSSQGSLMPLHSAIA+ARLISSL IESRGWGLVPQGISMPL
Subjt:  MASLKAVSRLSSRLHSLASKLNKRSSSSDQSPFKSTRQSRLSAPSTSRLSCTSRLPLELSSQGSLMPLHSAIAAARLISSLAIESRGWGLVPQGISMPL

A0A6J1KDE2 uncharacterized protein LOC1114938765.5e-3184.85Show/hide
Query:  MASLKAVSRLSSRLHSLASKLNKRSSSSDQSPFKSTRQSRLSAPSTSRLSCTSRLPLELSSQGSLMPLHSAIAAARLISSLAIESRGWGLVPQGISMPL
        MASL+AVSRLSSRL SLA KLNKRS SS+ SPFKS+ QS+ SA S SR+SCTSRLPLELSSQGSLMPLHSAIAAARLISSL+IES+GWGLVPQGISMPL
Subjt:  MASLKAVSRLSSRLHSLASKLNKRSSSSDQSPFKSTRQSRLSAPSTSRLSCTSRLPLELSSQGSLMPLHSAIAAARLISSLAIESRGWGLVPQGISMPL

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
AT1G55205.1 unknown protein3.1e-1857.43Show/hide
Query:  MASLKAVSRLSSRLHSLASKLNKRS--SSSDQSPFKSTRQSRLSAPSTSRLSCTSRLPLELSSQGSLMPLHSAIAAARLISSLAIESRGWGLVPQGISMP
        MAS   + RLSS++HSL  KL+K +   SS  SP KS+  S     +TSR++ + RLP+ELS   S++PLHSAIA+ARLISSL++ES+ WGLVPQGISMP
Subjt:  MASLKAVSRLSSRLHSLASKLNKRS--SSSDQSPFKSTRQSRLSAPSTSRLSCTSRLPLELSSQGSLMPLHSAIAAARLISSLAIESRGWGLVPQGISMP

Query:  L
        L
Subjt:  L

AT1G55205.2 unknown protein1.4e-1555.1Show/hide
Query:  MASLKAVSRLSSRLHSLASKLNKRS--SSSDQSPFKSTRQSRLSAPSTSRLSCTSRLPLELSSQGSLMPLHSAIAAARLISSLAIESRGWGLVPQGIS
        MAS   + RLSS++HSL  KL+K +   SS  SP KS+  S     +TSR++ + RLP+ELS   S++PLHSAIA+ARLISSL++ES+ WGLVPQG S
Subjt:  MASLKAVSRLSSRLHSLASKLNKRS--SSSDQSPFKSTRQSRLSAPSTSRLSCTSRLPLELSSQGSLMPLHSAIAAARLISSLAIESRGWGLVPQGIS

AT3G13674.1 unknown protein1.2e-1451.49Show/hide
Query:  MASLKAVSRLSSRLHSLASKLNKRSS--SSDQSPFKSTRQSRLSAPSTSRLSCTSRLPLELSSQGSLMPLHSAIAAARLISSLAIESRGWGLVPQGISMP
        MAS + + R SSRL SL   L+ +++  SS  SP KS      S+ ++ RL+ +SRLP+ELS   S++PLHSAIA++RL+SSL++ES+ WGLVPQG+S+P
Subjt:  MASLKAVSRLSSRLHSLASKLNKRSS--SSDQSPFKSTRQSRLSAPSTSRLSCTSRLPLELSSQGSLMPLHSAIAAARLISSLAIESRGWGLVPQGISMP

Query:  L
        L
Subjt:  L

AT4G39300.1 unknown protein1.9e-0437.37Show/hide
Query:  ASLKAVSR-LSSRLHSLASKLNKRSSSSDQSPFKSTRQSRLSAPSTSRLSCTSRLPLELSSQGSLMPLHSAIAAARLISSLAIESRGWGLVPQGISMPL
        ++L A SR L SR  ++  K      ++  SPF S  QS         +   SR+   L S  +++PLHSA+A+ARL SS+A +S  W L+ QG++ PL
Subjt:  ASLKAVSR-LSSRLHSLASKLNKRSSSSDQSPFKSTRQSRLSAPSTSRLSCTSRLPLELSSQGSLMPLHSAIAAARLISSLAIESRGWGLVPQGISMPL


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGCGTCCTTGAAGGCAGTCTCTCGGTTATCATCTCGCCTGCACTCTCTTGCTTCGAAGCTCAACAAAAGATCTTCATCTTCTGATCAATCTCCGTTTAAATCGACTCG
TCAATCTCGTCTCTCCGCACCTTCTACATCGCGTCTTTCTTGCACTTCGCGGTTACCATTGGAGTTGAGCAGCCAGGGGTCACTGATGCCACTGCACAGTGCCATAGCTG
CAGCAAGATTGATCTCGAGTCTGGCCATTGAATCTCGAGGATGGGGTTTAGTTCCTCAGGGTATTTCAATGCCTTTATGA
mRNA sequenceShow/hide mRNA sequence
AAATCCATTTCCATTACGGTTCAAGCTTAAGGAGGTCTTCAATGGCGTCCTTGAAGGCAGTCTCTCGGTTATCATCTCGCCTGCACTCTCTTGCTTCGAAGCTCAACAAA
AGATCTTCATCTTCTGATCAATCTCCGTTTAAATCGACTCGTCAATCTCGTCTCTCCGCACCTTCTACATCGCGTCTTTCTTGCACTTCGCGGTTACCATTGGAGTTGAG
CAGCCAGGGGTCACTGATGCCACTGCACAGTGCCATAGCTGCAGCAAGATTGATCTCGAGTCTGGCCATTGAATCTCGAGGATGGGGTTTAGTTCCTCAGGGTATTTCAA
TGCCTTTATGA
Protein sequenceShow/hide protein sequence
MASLKAVSRLSSRLHSLASKLNKRSSSSDQSPFKSTRQSRLSAPSTSRLSCTSRLPLELSSQGSLMPLHSAIAAARLISSLAIESRGWGLVPQGISMPL