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CmoCh12G012990 (gene) of Cucurbita moschata (Rifu) v1 genome

Gene IDCmoCh12G012990
OrganismCucurbita moschata Rifu (Cucurbita moschata (Rifu) v1)
DescriptionSNW/SKI-interacting protein-like
Genome locationCmo_Chr12:11430503..11432975
RNA-Seq ExpressionCmoCh12G012990
SyntenyCmoCh12G012990
Gene Ontology termsGO:0000398 - mRNA splicing, via spliceosome (biological process)
GO:0005681 - spliceosomal complex (cellular component)
InterPro domainsIPR017862 - SKI-interacting protein, SKIP


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0061535.1 SNW/SKI-interacting protein-like [Cucumis melo var. makuwa]2.5e-3976.52Show/hide
Query:  VAPLKD-LPSVKSTTVTHYDHTNDPCFKQRFSKSEEEQTSVVKTNLVPPYLKRSGFIPRKVEDFGN-GAFLEIHVAPYPLDMVETNHQKPGSKILPVTVD
        +A LKD LP+VKS TVTHYDH+NDP FKQRFS SE EQTSVVK N VPPYLKRSGF+PR+VEDFG+ GAF EIH+A YPLDM      KPGSKILPVTVD
Subjt:  VAPLKD-LPSVKSTTVTHYDHTNDPCFKQRFSKSEEEQTSVVKTNLVPPYLKRSGFIPRKVEDFGN-GAFLEIHVAPYPLDMVETNHQKPGSKILPVTVD

Query:  DHGNVADDAIVKLNE
         HGNVA DAIVK NE
Subjt:  DHGNVADDAIVKLNE

KAG6599470.1 SNW/SKI-interacting protein, partial [Cucurbita argyrosperma subsp. sororia]1.9e-3978.26Show/hide
Query:  VAPLKD-LPSVKSTTVTHYDHTNDPCFKQRFSKSEEEQTSVVKTNLVPPYLKRSGFIPRKVEDFGN-GAFLEIHVAPYPLDMVETNHQKPGSKILPVTVD
        +A LKD LP+VKST VT YDH+NDP FKQRFS SE EQTSVVK N VPPYLKRSGFIPRKVEDFGN GAF EIH+A YPLDM      KPGSKILPVTVD
Subjt:  VAPLKD-LPSVKSTTVTHYDHTNDPCFKQRFSKSEEEQTSVVKTNLVPPYLKRSGFIPRKVEDFGN-GAFLEIHVAPYPLDMVETNHQKPGSKILPVTVD

Query:  DHGNVADDAIVKLNE
         HGNVA DAIVK NE
Subjt:  DHGNVADDAIVKLNE

XP_008451180.1 PREDICTED: SNW/SKI-interacting protein-like [Cucumis melo]1.4e-3975.65Show/hide
Query:  VAPLKD-LPSVKSTTVTHYDHTNDPCFKQRFSKSEEEQTSVVKTNLVPPYLKRSGFIPRKVEDFGN-GAFLEIHVAPYPLDMVETNHQKPGSKILPVTVD
        +A LKD LP+VKSTTVTHYDH+NDP FKQRFS SE EQTSV+K N VPPYLKR GF+PRKVEDFG+ GAF EIH+A YPLDM      KPGSKILP+TVD
Subjt:  VAPLKD-LPSVKSTTVTHYDHTNDPCFKQRFSKSEEEQTSVVKTNLVPPYLKRSGFIPRKVEDFGN-GAFLEIHVAPYPLDMVETNHQKPGSKILPVTVD

Query:  DHGNVADDAIVKLNE
         HGNVA DAIVK NE
Subjt:  DHGNVADDAIVKLNE

XP_008458692.1 PREDICTED: SNW/SKI-interacting protein-like [Cucumis melo]2.5e-3976.52Show/hide
Query:  VAPLKD-LPSVKSTTVTHYDHTNDPCFKQRFSKSEEEQTSVVKTNLVPPYLKRSGFIPRKVEDFGN-GAFLEIHVAPYPLDMVETNHQKPGSKILPVTVD
        +A LKD LP+VKS TVTHYDH+NDP FKQRFS SE EQTSVVK N VPPYLKRSGF+PR+VEDFG+ GAF EIH+A YPLDM      KPGSKILPVTVD
Subjt:  VAPLKD-LPSVKSTTVTHYDHTNDPCFKQRFSKSEEEQTSVVKTNLVPPYLKRSGFIPRKVEDFGN-GAFLEIHVAPYPLDMVETNHQKPGSKILPVTVD

Query:  DHGNVADDAIVKLNE
         HGNVA DAIVK NE
Subjt:  DHGNVADDAIVKLNE

XP_031736674.1 SNW/SKI-interacting protein [Cucumis sativus]6.5e-4077.39Show/hide
Query:  VAPLKD-LPSVKSTTVTHYDHTNDPCFKQRFSKSEEEQTSVVKTNLVPPYLKRSGFIPRKVEDFGN-GAFLEIHVAPYPLDMVETNHQKPGSKILPVTVD
        +A LKD LP+VKSTTVTHYDH+NDP FKQRFS SE EQTSVVK N VPPYLKRSGF+PR+VEDFG+ GAF EIH+A YPLDM      KPGSKILPVTVD
Subjt:  VAPLKD-LPSVKSTTVTHYDHTNDPCFKQRFSKSEEEQTSVVKTNLVPPYLKRSGFIPRKVEDFGN-GAFLEIHVAPYPLDMVETNHQKPGSKILPVTVD

Query:  DHGNVADDAIVKLNE
         HGNVA DAIVK NE
Subjt:  DHGNVADDAIVKLNE

TrEMBL top hitse value%identityAlignment
A0A0A0LIR8 SKIP_SNW domain-containing protein3.1e-4077.39Show/hide
Query:  VAPLKD-LPSVKSTTVTHYDHTNDPCFKQRFSKSEEEQTSVVKTNLVPPYLKRSGFIPRKVEDFGN-GAFLEIHVAPYPLDMVETNHQKPGSKILPVTVD
        +A LKD LP+VKSTTVTHYDH+NDP FKQRFS SE EQTSVVK N VPPYLKRSGF+PR+VEDFG+ GAF EIH+A YPLDM      KPGSKILPVTVD
Subjt:  VAPLKD-LPSVKSTTVTHYDHTNDPCFKQRFSKSEEEQTSVVKTNLVPPYLKRSGFIPRKVEDFGN-GAFLEIHVAPYPLDMVETNHQKPGSKILPVTVD

Query:  DHGNVADDAIVKLNE
         HGNVA DAIVK NE
Subjt:  DHGNVADDAIVKLNE

A0A1S3BRY8 SNW/SKI-interacting protein-like7.0e-4075.65Show/hide
Query:  VAPLKD-LPSVKSTTVTHYDHTNDPCFKQRFSKSEEEQTSVVKTNLVPPYLKRSGFIPRKVEDFGN-GAFLEIHVAPYPLDMVETNHQKPGSKILPVTVD
        +A LKD LP+VKSTTVTHYDH+NDP FKQRFS SE EQTSV+K N VPPYLKR GF+PRKVEDFG+ GAF EIH+A YPLDM      KPGSKILP+TVD
Subjt:  VAPLKD-LPSVKSTTVTHYDHTNDPCFKQRFSKSEEEQTSVVKTNLVPPYLKRSGFIPRKVEDFGN-GAFLEIHVAPYPLDMVETNHQKPGSKILPVTVD

Query:  DHGNVADDAIVKLNE
         HGNVA DAIVK NE
Subjt:  DHGNVADDAIVKLNE

A0A1S4E1T1 SNW/SKI-interacting protein-like1.2e-3976.52Show/hide
Query:  VAPLKD-LPSVKSTTVTHYDHTNDPCFKQRFSKSEEEQTSVVKTNLVPPYLKRSGFIPRKVEDFGN-GAFLEIHVAPYPLDMVETNHQKPGSKILPVTVD
        +A LKD LP+VKS TVTHYDH+NDP FKQRFS SE EQTSVVK N VPPYLKRSGF+PR+VEDFG+ GAF EIH+A YPLDM      KPGSKILPVTVD
Subjt:  VAPLKD-LPSVKSTTVTHYDHTNDPCFKQRFSKSEEEQTSVVKTNLVPPYLKRSGFIPRKVEDFGN-GAFLEIHVAPYPLDMVETNHQKPGSKILPVTVD

Query:  DHGNVADDAIVKLNE
         HGNVA DAIVK NE
Subjt:  DHGNVADDAIVKLNE

A0A5D3BV89 SNW/SKI-interacting protein-like7.0e-4075.65Show/hide
Query:  VAPLKD-LPSVKSTTVTHYDHTNDPCFKQRFSKSEEEQTSVVKTNLVPPYLKRSGFIPRKVEDFGN-GAFLEIHVAPYPLDMVETNHQKPGSKILPVTVD
        +A LKD LP+VKSTTVTHYDH+NDP FKQRFS SE EQTSV+K N VPPYLKR GF+PRKVEDFG+ GAF EIH+A YPLDM      KPGSKILP+TVD
Subjt:  VAPLKD-LPSVKSTTVTHYDHTNDPCFKQRFSKSEEEQTSVVKTNLVPPYLKRSGFIPRKVEDFGN-GAFLEIHVAPYPLDMVETNHQKPGSKILPVTVD

Query:  DHGNVADDAIVKLNE
         HGNVA DAIVK NE
Subjt:  DHGNVADDAIVKLNE

A0A5D3CHM8 SNW/SKI-interacting protein-like1.2e-3976.52Show/hide
Query:  VAPLKD-LPSVKSTTVTHYDHTNDPCFKQRFSKSEEEQTSVVKTNLVPPYLKRSGFIPRKVEDFGN-GAFLEIHVAPYPLDMVETNHQKPGSKILPVTVD
        +A LKD LP+VKS TVTHYDH+NDP FKQRFS SE EQTSVVK N VPPYLKRSGF+PR+VEDFG+ GAF EIH+A YPLDM      KPGSKILPVTVD
Subjt:  VAPLKD-LPSVKSTTVTHYDHTNDPCFKQRFSKSEEEQTSVVKTNLVPPYLKRSGFIPRKVEDFGN-GAFLEIHVAPYPLDMVETNHQKPGSKILPVTVD

Query:  DHGNVADDAIVKLNE
         HGNVA DAIVK NE
Subjt:  DHGNVADDAIVKLNE

SwissProt top hitse value%identityAlignment
O80653 SNW/SKI-interacting protein1.1e-2654.95Show/hide
Query:  LKDLPSVKSTTVTHYDHTNDPCFKQRFSKSEEEQTSVVKTNLVPPYLKRSGFIPRKVEDFGN-GAFLEIHVAPYPLDMVETNHQKPGSKILPVTVDDHGN
        L DLP+ KSTT T+YDH+ND  FK R ++SE  ++S +K  +VP YL R G  P+  EDFG+ GAF EIH+  YPL M +    KPG+K LPVTVD  GN
Subjt:  LKDLPSVKSTTVTHYDHTNDPCFKQRFSKSEEEQTSVVKTNLVPPYLKRSGFIPRKVEDFGN-GAFLEIHVAPYPLDMVETNHQKPGSKILPVTVDDHGN

Query:  VADDAIVKLNE
        V  DAIV+ NE
Subjt:  VADDAIVKLNE

Q13573 SNW domain-containing protein 15.5e-1042.22Show/hide
Query:  KQRFSKSEEEQTSVVKTNL-VPPYLKRSGFIPRKVEDFGN-GAFLEIHVAPYPLDMVETNHQKPGSKILPVTVDDHGNVADDAIVKLNET
        +++       QTS+V +    PPY  R G+IPR +EDFG+ GAF EIHVA YPLDM     +K  S  L + VD  G +  DAI +  ++
Subjt:  KQRFSKSEEEQTSVVKTNL-VPPYLKRSGFIPRKVEDFGN-GAFLEIHVAPYPLDMVETNHQKPGSKILPVTVDDHGNVADDAIVKLNET

Q5R7R9 SNW domain-containing protein 15.5e-1042.22Show/hide
Query:  KQRFSKSEEEQTSVVKTNL-VPPYLKRSGFIPRKVEDFGN-GAFLEIHVAPYPLDMVETNHQKPGSKILPVTVDDHGNVADDAIVKLNET
        +++       QTS+V +    PPY  R G+IPR +EDFG+ GAF EIHVA YPLDM     +K  S  L + VD  G +  DAI +  ++
Subjt:  KQRFSKSEEEQTSVVKTNL-VPPYLKRSGFIPRKVEDFGN-GAFLEIHVAPYPLDMVETNHQKPGSKILPVTVDDHGNVADDAIVKLNET

Q69QB5 SNW/SKI-interacting protein B3.8e-1141.12Show/hide
Query:  YDHTNDPCFKQRF---SKSEEEQTSVVKTNLVPPYLKRSGFIPRKVEDFGN-GAFLEIHVAPYPLDMVETNHQKPGSK------ILPVTVD-DHGNVADD
        +DHT D  FK+R+       +   S    N VPPY +RS   PR+ EDFG+ GAF E+HVA YPLDM        G +      +L +TVD   G V  D
Subjt:  YDHTNDPCFKQRF---SKSEEEQTSVVKTNLVPPYLKRSGFIPRKVEDFGN-GAFLEIHVAPYPLDMVETNHQKPGSK------ILPVTVD-DHGNVADD

Query:  AIVKLNE
        A+V+  E
Subjt:  AIVKLNE

Q6K8D9 SNW/SKI-interacting protein A1.6e-2047.54Show/hide
Query:  VAPLKD-LPSVKSTTVTHYDHTNDPCFKQRFSKSEEEQTSVV-------KTNLVPPYLKRSGFIPRKVEDFGN-GAFLEIHVAPYPLDMVETNHQKPGSK
        +A LK+ LP+ K+   T YDH++DP FK+R+     +  +             VPPY KR GF+PR+ EDFG+ GAF EIHVA YPL M   + +K GSK
Subjt:  VAPLKD-LPSVKSTTVTHYDHTNDPCFKQRFSKSEEEQTSVV-------KTNLVPPYLKRSGFIPRKVEDFGN-GAFLEIHVAPYPLDMVETNHQKPGSK

Query:  ILPVTVDDHGNVADDAIVKLNE
        IL +TVD  G+VA DA+VK  E
Subjt:  ILPVTVDDHGNVADDAIVKLNE

Arabidopsis top hitse value%identityAlignment
AT1G77180.1 chromatin protein family7.9e-2854.95Show/hide
Query:  LKDLPSVKSTTVTHYDHTNDPCFKQRFSKSEEEQTSVVKTNLVPPYLKRSGFIPRKVEDFGN-GAFLEIHVAPYPLDMVETNHQKPGSKILPVTVDDHGN
        L DLP+ KSTT T+YDH+ND  FK R ++SE  ++S +K  +VP YL R G  P+  EDFG+ GAF EIH+  YPL M +    KPG+K LPVTVD  GN
Subjt:  LKDLPSVKSTTVTHYDHTNDPCFKQRFSKSEEEQTSVVKTNLVPPYLKRSGFIPRKVEDFGN-GAFLEIHVAPYPLDMVETNHQKPGSKILPVTVDDHGN

Query:  VADDAIVKLNE
        V  DAIV+ NE
Subjt:  VADDAIVKLNE

AT1G77180.2 chromatin protein family7.9e-2854.95Show/hide
Query:  LKDLPSVKSTTVTHYDHTNDPCFKQRFSKSEEEQTSVVKTNLVPPYLKRSGFIPRKVEDFGN-GAFLEIHVAPYPLDMVETNHQKPGSKILPVTVDDHGN
        L DLP+ KSTT T+YDH+ND  FK R ++SE  ++S +K  +VP YL R G  P+  EDFG+ GAF EIH+  YPL M +    KPG+K LPVTVD  GN
Subjt:  LKDLPSVKSTTVTHYDHTNDPCFKQRFSKSEEEQTSVVKTNLVPPYLKRSGFIPRKVEDFGN-GAFLEIHVAPYPLDMVETNHQKPGSKILPVTVDDHGN

Query:  VADDAIVKLNE
        V  DAIV+ NE
Subjt:  VADDAIVKLNE

AT1G77180.3 chromatin protein family7.9e-2854.95Show/hide
Query:  LKDLPSVKSTTVTHYDHTNDPCFKQRFSKSEEEQTSVVKTNLVPPYLKRSGFIPRKVEDFGN-GAFLEIHVAPYPLDMVETNHQKPGSKILPVTVDDHGN
        L DLP+ KSTT T+YDH+ND  FK R ++SE  ++S +K  +VP YL R G  P+  EDFG+ GAF EIH+  YPL M +    KPG+K LPVTVD  GN
Subjt:  LKDLPSVKSTTVTHYDHTNDPCFKQRFSKSEEEQTSVVKTNLVPPYLKRSGFIPRKVEDFGN-GAFLEIHVAPYPLDMVETNHQKPGSKILPVTVDDHGN

Query:  VADDAIVKLNE
        V  DAIV+ NE
Subjt:  VADDAIVKLNE


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGTGTCATTCTTCTCTCCGATGGTGAAAATCGCTATTTCGAATGCTACAGGTCGTATTAGGTGGTCTAAGATTGTGGCACCTCTGAAAGACCTTCCTTCTGTAAAGTC
AACAACTGTAACACACTACGATCACACAAATGATCCATGTTTCAAGCAACGGTTTAGTAAATCAGAAGAAGAGCAAACTTCTGTGGTTAAGACAAATCTTGTGCCGCCTT
ACTTGAAGCGGAGTGGATTTATTCCCCGGAAAGTAGAGGATTTTGGAAATGGTGCATTCCTAGAGATTCACGTTGCTCCATACCCCCTTGACATGGTAGAGACAAATCAT
CAAAAGCCTGGATCAAAGATCCTTCCTGTTACTGTGGATGATCATGGAAATGTTGCAGATGATGCTATCGTCAAACTGAACGAAACATGA
mRNA sequenceShow/hide mRNA sequence
ATCCTCGTCGTCGTTTTCTCTGATTCTTAGCAACATCAATCGCTTTCTCTTCATTCTCATCTATCTCTCAATCTCCTCAGTCGGGCCGTAGCCACAACGCAGATCTTTCC
TTCTTTCTTCTCGGAGGCCGGCGCCGATCTACACGTTACCATATCTATTTCCTAGTTGCTGTAACGAAGTCGATTTCAGCGTCTGTCTCGTTTCGGAGAGTATTGATGGT
GTCATTCTTCTCTCCGATGGTGAAAATCGCTATTTCGAATGCTACAGGTCGTATTAGGTGGTCTAAGATTGTGGCACCTCTGAAAGACCTTCCTTCTGTAAAGTCAACAA
CTGTAACACACTACGATCACACAAATGATCCATGTTTCAAGCAACGGTTTAGTAAATCAGAAGAAGAGCAAACTTCTGTGGTTAAGACAAATCTTGTGCCGCCTTACTTG
AAGCGGAGTGGATTTATTCCCCGGAAAGTAGAGGATTTTGGAAATGGTGCATTCCTAGAGATTCACGTTGCTCCATACCCCCTTGACATGGTAGAGACAAATCATCAAAA
GCCTGGATCAAAGATCCTTCCTGTTACTGTGGATGATCATGGAAATGTTGCAGATGATGCTATCGTCAAACTGAACGAAACATGA
Protein sequenceShow/hide protein sequence
MVSFFSPMVKIAISNATGRIRWSKIVAPLKDLPSVKSTTVTHYDHTNDPCFKQRFSKSEEEQTSVVKTNLVPPYLKRSGFIPRKVEDFGNGAFLEIHVAPYPLDMVETNH
QKPGSKILPVTVDDHGNVADDAIVKLNET