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CmoCh12G013000 (gene) of Cucurbita moschata (Rifu) v1 genome

Gene IDCmoCh12G013000
OrganismCucurbita moschata Rifu (Cucurbita moschata (Rifu) v1)
DescriptionSNW/SKI-interacting protein-like
Genome locationCmo_Chr12:11433499..11434813
RNA-Seq ExpressionCmoCh12G013000
SyntenyCmoCh12G013000
Gene Ontology termsGO:0000398 - mRNA splicing, via spliceosome (biological process)
GO:0005681 - spliceosomal complex (cellular component)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG6586446.1 hypothetical protein SDJN03_19179, partial [Cucurbita argyrosperma subsp. sororia]1.9e-2070.83Show/hide
Query:  MFMKQKEKESELRALAQKARSESTGAAPASAAPYPSERKRERVVAHRHVMATMVAPVELLLDSKEGSRGTMQGGKVGILIGRTLLGENEPNFPHIP
        MFMKQ     ELRALAQKARSE TGAAPASAAPYPSERKR                 EL LDSKEGSR    GGKVGILIGRTLLGENEPNFPHIP
Subjt:  MFMKQKEKESELRALAQKARSESTGAAPASAAPYPSERKRERVVAHRHVMATMVAPVELLLDSKEGSRGTMQGGKVGILIGRTLLGENEPNFPHIP
KAG6599470.1 SNW/SKI-interacting protein, partial [Cucurbita argyrosperma subsp. sororia]6.0e-0682.98Show/hide
Query:  MRSKVQKEMFMKQKE-KESELRALAQKARSESTGAAPASAAPYPSER
        MRSKVQKEM MKQKE KE ELRALAQKARSE TGAAP  A  YPSER
Subjt:  MRSKVQKEMFMKQKE-KESELRALAQKARSESTGAAPASAAPYPSER
PNS93405.1 hypothetical protein POPTR_018G086100 [Populus trichocarpa]6.0e-0680.85Show/hide
Query:  MRSKVQKEMFMKQKE-KESELRALAQKARSESTGAAPASAAPYPSER
        MRSKVQKEM MK+KE KE ELRALAQKARSE TGAAP  +AP PSER
Subjt:  MRSKVQKEMFMKQKE-KESELRALAQKARSESTGAAPASAAPYPSER
XP_022149899.1 SNW/SKI-interacting protein-like [Momordica charantia]4.6e-0682.98Show/hide
Query:  MRSKVQKEMFMKQKE-KESELRALAQKARSESTGAAPASAAPYPSER
        MRSKVQKEM MKQKE KE ELRALAQKARSE TGAAP S   YPSER
Subjt:  MRSKVQKEMFMKQKE-KESELRALAQKARSESTGAAPASAAPYPSER
XP_022154720.1 SNW/SKI-interacting protein-like [Momordica charantia]1.1e-0784Show/hide
Query:  MRSKVQKEMFMKQKE-KESELRALAQKARSESTGAAPASAAPYPSERKRE
        MRSKVQKEM MKQKE KE ELRALAQKARSE TGAAP SA PYPSER  E
Subjt:  MRSKVQKEMFMKQKE-KESELRALAQKARSESTGAAPASAAPYPSERKRE
TrEMBL top hitse value%identityAlignment
A0A2K1WY04 SKIP_SNW domain-containing protein2.9e-0680.85Show/hide
Query:  MRSKVQKEMFMKQKE-KESELRALAQKARSESTGAAPASAAPYPSER
        MRSKVQKEM MK+KE KE ELRALAQKARSE TGAAP  +AP PSER
Subjt:  MRSKVQKEMFMKQKE-KESELRALAQKARSESTGAAPASAAPYPSER
A0A6J1D8D9 SNW/SKI-interacting protein-like2.2e-0682.98Show/hide
Query:  MRSKVQKEMFMKQKE-KESELRALAQKARSESTGAAPASAAPYPSER
        MRSKVQKEM MKQKE KE ELRALAQKARSE TGAAP S   YPSER
Subjt:  MRSKVQKEMFMKQKE-KESELRALAQKARSESTGAAPASAAPYPSER
A0A6J1DKF4 SNW/SKI-interacting protein-like5.3e-0884Show/hide
Query:  MRSKVQKEMFMKQKE-KESELRALAQKARSESTGAAPASAAPYPSERKRE
        MRSKVQKEM MKQKE KE ELRALAQKARSE TGAAP SA PYPSER  E
Subjt:  MRSKVQKEMFMKQKE-KESELRALAQKARSESTGAAPASAAPYPSERKRE
A0A6J1G3R1 SNW/SKI-interacting protein-like2.9e-0682.98Show/hide
Query:  MRSKVQKEMFMKQKE-KESELRALAQKARSESTGAAPASAAPYPSER
        MRSKVQKEM MKQKE KE ELRALAQKARSE TGAAP  A  YPSER
Subjt:  MRSKVQKEMFMKQKE-KESELRALAQKARSESTGAAPASAAPYPSER
A0A6J1KD39 SNW/SKI-interacting protein-like2.9e-0682.98Show/hide
Query:  MRSKVQKEMFMKQKE-KESELRALAQKARSESTGAAPASAAPYPSER
        MRSKVQKEM MKQKE KE ELRALAQKARSE TGAAP  A  YPSER
Subjt:  MRSKVQKEMFMKQKE-KESELRALAQKARSESTGAAPASAAPYPSER
SwissProt top hitse value%identityAlignment
O80653 SNW/SKI-interacting protein5.2e-0566.07Show/hide
Query:  MRSKVQKEMFMKQKE-KESELRALAQKARSESTGAAPASAAPYPSERKRERVVAHR
        MRSKVQKEM MK KE KE ELRALAQKARSE TGA  A + P  S+R R   V  R
Subjt:  MRSKVQKEMFMKQKE-KESELRALAQKARSESTGAAPASAAPYPSERKRERVVAHR
Arabidopsis top hitse value%identityAlignment
AT1G77180.1 chromatin protein family3.7e-0666.07Show/hide
Query:  MRSKVQKEMFMKQKE-KESELRALAQKARSESTGAAPASAAPYPSERKRERVVAHR
        MRSKVQKEM MK KE KE ELRALAQKARSE TGA  A + P  S+R R   V  R
Subjt:  MRSKVQKEMFMKQKE-KESELRALAQKARSESTGAAPASAAPYPSERKRERVVAHR
AT1G77180.2 chromatin protein family3.7e-0666.07Show/hide
Query:  MRSKVQKEMFMKQKE-KESELRALAQKARSESTGAAPASAAPYPSERKRERVVAHR
        MRSKVQKEM MK KE KE ELRALAQKARSE TGA  A + P  S+R R   V  R
Subjt:  MRSKVQKEMFMKQKE-KESELRALAQKARSESTGAAPASAAPYPSERKRERVVAHR
AT1G77180.3 chromatin protein family3.7e-0666.07Show/hide
Query:  MRSKVQKEMFMKQKE-KESELRALAQKARSESTGAAPASAAPYPSERKRERVVAHR
        MRSKVQKEM MK KE KE ELRALAQKARSE TGA  A + P  S+R R   V  R
Subjt:  MRSKVQKEMFMKQKE-KESELRALAQKARSESTGAAPASAAPYPSERKRERVVAHR

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGAGATCTAAGGTTCAGAAAGAAATGTTTATGAAGCAGAAGGAGAAGGAGTCAGAGCTTCGAGCGCTAGCTCAAAAGGCTCGGTCTGAGAGCACTGGAGCTGCCCCTGC
TTCTGCAGCTCCTTATCCATCAGAGAGAAAGAGAGAGCGAGTGGTGGCTCATCGACATGTGATGGCTACGATGGTGGCTCCGGTAGAACTCTTATTGGATTCGAAAGAAG
GCAGTAGAGGTACAATGCAAGGTGGAAAAGTTGGGATCCTGATCGGGAGGACACTTTTGGGCGAAAATGAGCCAAATTTTCCACATATACCTTAA
mRNA sequenceShow/hide mRNA sequence
ATGAGATCTAAGGTTCAGAAAGAAATGTTTATGAAGCAGAAGGAGAAGGAGTCAGAGCTTCGAGCGCTAGCTCAAAAGGCTCGGTCTGAGAGCACTGGAGCTGCCCCTGC
TTCTGCAGCTCCTTATCCATCAGAGAGAAAGAGAGAGCGAGTGGTGGCTCATCGACATGTGATGGCTACGATGGTGGCTCCGGTAGAACTCTTATTGGATTCGAAAGAAG
GCAGTAGAGGTACAATGCAAGGTGGAAAAGTTGGGATCCTGATCGGGAGGACACTTTTGGGCGAAAATGAGCCAAATTTTCCACATATACCTTAAGGAGTTTCGTATCTT
CCGGAATCATTGGCTTTTGAGGGCGAGGATGTCGGCAGGTATTCTCATTCACCCACTCCAATACAAATGTTAAACAAATTTACGTTTAACTACCGTCTTCCTTTTGGTGA
TCCACTCTAAAATTTGTGCTATAGTATGCATGTATGTATTAATTTTCCATTTACAACTTTTCTTTCCAATTTTTTTAACAGTTAATTTTATAAAAATACCCTTACATTTA
ACTTCAAACTTTGAAACTTGCAAAAGAATTTATAAATATCCAAAGTTTAAATTTTTATAATATTTTTAAAAA
Protein sequenceShow/hide protein sequence
MRSKVQKEMFMKQKEKESELRALAQKARSESTGAAPASAAPYPSERKRERVVAHRHVMATMVAPVELLLDSKEGSRGTMQGGKVGILIGRTLLGENEPNFPHIP