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CmoCh12G013510 (gene) of Cucurbita moschata (Rifu) v1 genome

Gene IDCmoCh12G013510
OrganismCucurbita moschata Rifu (Cucurbita moschata (Rifu) v1)
DescriptionRibosomal protein
Genome locationCmo_Chr12:11662288..11664877
RNA-Seq ExpressionCmoCh12G013510
SyntenyCmoCh12G013510
Gene Ontology termsGO:0016021 - integral component of membrane (cellular component)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG6586492.1 hypothetical protein SDJN03_19225, partial [Cucurbita argyrosperma subsp. sororia]3.2e-5894.07Show/hide
Query:  DEEVEQTVQLVESVSDKHPDLLRPSARICSIFKGQEKDVSDHTKNKYTLLKDVEDLQIGLYDKPLPCFGCGVGWFSFLLGFLFPIMWYYATILYFWNVRR
        D +VEQTVQLVESVSDKHPDLLRPSAR+CSIFKGQEKDVSDHTKNKYTLLKDVEDLQIGLYDKPLPCFGCG+GWFSFLLGFLFPIMWYYATILYFWNVRR
Subjt:  DEEVEQTVQLVESVSDKHPDLLRPSARICSIFKGQEKDVSDHTKNKYTLLKDVEDLQIGLYDKPLPCFGCGVGWFSFLLGFLFPIMWYYATILYFWNVRR

Query:  DPRERAGLAASAIAVSIC
        DPRERAGLAASAIA   C
Subjt:  DPRERAGLAASAIAVSIC

KAG7021350.1 hypothetical protein SDJN02_18039 [Cucurbita argyrosperma subsp. argyrosperma]1.9e-5894.92Show/hide
Query:  DEEVEQTVQLVESVSDKHPDLLRPSARICSIFKGQEKDVSDHTKNKYTLLKDVEDLQIGLYDKPLPCFGCGVGWFSFLLGFLFPIMWYYATILYFWNVRR
        D +VEQTVQLVESVSDKHPDLLRPSARICSIFKGQEKDVSDHTKNKYTLLKDVEDLQIGLYDKPLPCFGCG+GWFSFLLGFLFPIMWYYATILYFWNVRR
Subjt:  DEEVEQTVQLVESVSDKHPDLLRPSARICSIFKGQEKDVSDHTKNKYTLLKDVEDLQIGLYDKPLPCFGCGVGWFSFLLGFLFPIMWYYATILYFWNVRR

Query:  DPRERAGLAASAIAVSIC
        DPRERAGLAASAIA   C
Subjt:  DPRERAGLAASAIAVSIC

XP_022937742.1 uncharacterized protein LOC111444050 [Cucurbita moschata]1.4e-5895.76Show/hide
Query:  DEEVEQTVQLVESVSDKHPDLLRPSARICSIFKGQEKDVSDHTKNKYTLLKDVEDLQIGLYDKPLPCFGCGVGWFSFLLGFLFPIMWYYATILYFWNVRR
        D +VEQTVQLVESVSDKHPDLLRPSARICSIFKGQEKDVSDHTKNKYTLLKDVEDLQIGLYDKPLPCFGCGVGWFSFLLGFLFPIMWYYATILYFWNVRR
Subjt:  DEEVEQTVQLVESVSDKHPDLLRPSARICSIFKGQEKDVSDHTKNKYTLLKDVEDLQIGLYDKPLPCFGCGVGWFSFLLGFLFPIMWYYATILYFWNVRR

Query:  DPRERAGLAASAIAVSIC
        DPRERAGLAASAIA   C
Subjt:  DPRERAGLAASAIAVSIC

XP_022965444.1 uncharacterized protein LOC111465349 [Cucurbita maxima]6.0e-5792.37Show/hide
Query:  DEEVEQTVQLVESVSDKHPDLLRPSARICSIFKGQEKDVSDHTKNKYTLLKDVEDLQIGLYDKPLPCFGCGVGWFSFLLGFLFPIMWYYATILYFWNVRR
        D +VEQTVQLVESV DKHPDLLRPSARICSIF+GQEKDVSDHTKNKYTLLKDVEDLQIGLYDKPLPCFGCG+GWFSFLLGFLFPIMWYYATILYFWN RR
Subjt:  DEEVEQTVQLVESVSDKHPDLLRPSARICSIFKGQEKDVSDHTKNKYTLLKDVEDLQIGLYDKPLPCFGCGVGWFSFLLGFLFPIMWYYATILYFWNVRR

Query:  DPRERAGLAASAIAVSIC
        DPRERAGLAASAIA   C
Subjt:  DPRERAGLAASAIAVSIC

XP_023538492.1 uncharacterized protein LOC111799252 [Cucurbita pepo subsp. pepo]2.1e-5793.22Show/hide
Query:  DEEVEQTVQLVESVSDKHPDLLRPSARICSIFKGQEKDVSDHTKNKYTLLKDVEDLQIGLYDKPLPCFGCGVGWFSFLLGFLFPIMWYYATILYFWNVRR
        D +VEQTVQLVESVSDKHPDLLRPSARICSIFKGQEKD  DHTKNKYTLLKDVEDLQIGLYDKPLPCFGCG+GWFSFLLGFLFPIMWYYATILYFWNVRR
Subjt:  DEEVEQTVQLVESVSDKHPDLLRPSARICSIFKGQEKDVSDHTKNKYTLLKDVEDLQIGLYDKPLPCFGCGVGWFSFLLGFLFPIMWYYATILYFWNVRR

Query:  DPRERAGLAASAIAVSIC
        DPRERAGLAASAIA   C
Subjt:  DPRERAGLAASAIAVSIC

TrEMBL top hitse value%identityAlignment
A0A1S3CAZ9 uncharacterized protein LOC1034986583.5e-5081.9Show/hide
Query:  EVEQTVQLVESVSDKHPDLLRPSARICSIFKGQEKDVSDHTKNKYTLLKDVEDLQIGLYDKPLPCFGCGVGWFSFLLGFLFPIMWYYATILYFWNVRRDP
        +++QTVQLV+SVSDKH DLLRPSARICSIFKGQ KD  DH ++KYTLL+DVED Q+GLYDKPLPCFGCG+GWFSFLLGF FP+MWYYATILYFWN RRDP
Subjt:  EVEQTVQLVESVSDKHPDLLRPSARICSIFKGQEKDVSDHTKNKYTLLKDVEDLQIGLYDKPLPCFGCGVGWFSFLLGFLFPIMWYYATILYFWNVRRDP

Query:  RERAGLAASAIAVSIC
        RERAGLAASAIA   C
Subjt:  RERAGLAASAIAVSIC

A0A6J1DKD4 uncharacterized protein LOC111021894 isoform X26.1e-5568.75Show/hide
Query:  QTVQLVESVSDKHPDLLRPSARICSIFKGQEKDVSDHTKNKYTLLKDVEDLQIGLYDKPLPCFGCGVGWFSFLLGFLFPIMWYYATILYFWNVRRDPRER
        +T QLV+SVSDKH DLLRPSAR CSIF+GQ KD SDH ++KYTLL+DVED Q+GLYDKPLPCFGCG+GWFSFLLGF FP++WYYAT+LYFWNVRRDPRER
Subjt:  QTVQLVESVSDKHPDLLRPSARICSIFKGQEKDVSDHTKNKYTLLKDVEDLQIGLYDKPLPCFGCGVGWFSFLLGFLFPIMWYYATILYFWNVRRDPRER

Query:  AGLAASAIAVSI------CMFGHLVSHRSCSPIIALPCLSTRTAFSLPLQPWQYSPKQNS
        AGLAASAIA  I      CMFGHLVS  SCS +IA P         L L  W    +Q+S
Subjt:  AGLAASAIAVSI------CMFGHLVSHRSCSPIIALPCLSTRTAFSLPLQPWQYSPKQNS

A0A6J1DMX6 uncharacterized protein LOC111021894 isoform X13.6e-5566.87Show/hide
Query:  RDEEVEQTVQLVESVSDKHPDLLRPSARICSIFKGQEKDVSDHTKNKYTLLKDVEDLQIGLYDKPLPCFGCGVGWFSFLLGFLFPIMWYYATILYFWNVR
        +D    +T QLV+SVSDKH DLLRPSAR CSIF+GQ KD SDH ++KYTLL+DVED Q+GLYDKPLPCFGCG+GWFSFLLGF FP++WYYAT+LYFWNVR
Subjt:  RDEEVEQTVQLVESVSDKHPDLLRPSARICSIFKGQEKDVSDHTKNKYTLLKDVEDLQIGLYDKPLPCFGCGVGWFSFLLGFLFPIMWYYATILYFWNVR

Query:  RDPRERAGLAASAIAVSI------CMFGHLVSHRSCSPIIALPCLSTRTAFSLPLQPWQYSPKQNS
        RDPRERAGLAASAIA  I      CMFGHLVS  SCS +IA P         L L  W    +Q+S
Subjt:  RDPRERAGLAASAIAVSI------CMFGHLVSHRSCSPIIALPCLSTRTAFSLPLQPWQYSPKQNS

A0A6J1FC32 uncharacterized protein LOC1114440506.9e-5995.76Show/hide
Query:  DEEVEQTVQLVESVSDKHPDLLRPSARICSIFKGQEKDVSDHTKNKYTLLKDVEDLQIGLYDKPLPCFGCGVGWFSFLLGFLFPIMWYYATILYFWNVRR
        D +VEQTVQLVESVSDKHPDLLRPSARICSIFKGQEKDVSDHTKNKYTLLKDVEDLQIGLYDKPLPCFGCGVGWFSFLLGFLFPIMWYYATILYFWNVRR
Subjt:  DEEVEQTVQLVESVSDKHPDLLRPSARICSIFKGQEKDVSDHTKNKYTLLKDVEDLQIGLYDKPLPCFGCGVGWFSFLLGFLFPIMWYYATILYFWNVRR

Query:  DPRERAGLAASAIAVSIC
        DPRERAGLAASAIA   C
Subjt:  DPRERAGLAASAIAVSIC

A0A6J1HNQ0 uncharacterized protein LOC1114653492.9e-5792.37Show/hide
Query:  DEEVEQTVQLVESVSDKHPDLLRPSARICSIFKGQEKDVSDHTKNKYTLLKDVEDLQIGLYDKPLPCFGCGVGWFSFLLGFLFPIMWYYATILYFWNVRR
        D +VEQTVQLVESV DKHPDLLRPSARICSIF+GQEKDVSDHTKNKYTLLKDVEDLQIGLYDKPLPCFGCG+GWFSFLLGFLFPIMWYYATILYFWN RR
Subjt:  DEEVEQTVQLVESVSDKHPDLLRPSARICSIFKGQEKDVSDHTKNKYTLLKDVEDLQIGLYDKPLPCFGCGVGWFSFLLGFLFPIMWYYATILYFWNVRR

Query:  DPRERAGLAASAIAVSIC
        DPRERAGLAASAIA   C
Subjt:  DPRERAGLAASAIAVSIC

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
AT1G54217.1 Ribosomal protein L18ae family2.5e-2158.54Show/hide
Query:  DVSDHTKNKYTLLK-DVEDLQIGLYDKPLPCFGCGVGWFSFLLGFLFPIMWYYATILYFWN-VRRDPRERAGLAASAIAVSI
        ++ +  K KY L++ D ED ++G + KPLPCFG G+GWFSFLLGF+FP  WY AT LY  +   RDPRER+GLAASAIA  I
Subjt:  DVSDHTKNKYTLLK-DVEDLQIGLYDKPLPCFGCGVGWFSFLLGFLFPIMWYYATILYFWN-VRRDPRERAGLAASAIAVSI

AT1G54217.2 Ribosomal protein L18ae family6.7e-2259.76Show/hide
Query:  DVSDHTKNKYTLLK-DVEDLQIGLYDKPLPCFGCGVGWFSFLLGFLFPIMWYYATILYFWN-VRRDPRERAGLAASAIAVSI
        D+ +  K KY L++ D ED ++G + KPLPCFG G+GWFSFLLGF+FP  WY AT LY  +   RDPRER+GLAASAIA  I
Subjt:  DVSDHTKNKYTLLK-DVEDLQIGLYDKPLPCFGCGVGWFSFLLGFLFPIMWYYATILYFWN-VRRDPRERAGLAASAIAVSI

AT4G26060.1 Ribosomal protein L18ae family2.2e-3360.18Show/hide
Query:  EEVEQTVQLVESVSDKHPDLLRPSARICSIFKGQEKDVSDHTKNKYTLLKDVEDLQIGLYDKPLPCFGCGVGWFSFLLGFLFPIMWYYATILYFWN-VRR
        E  + + +LV+SV+DKH  L+RP A+  S      KD     K +YTL+KDV++++ G+YDKPLPCFGCG+GWFSFLLGF+FP +WYYAT+LYF N  R+
Subjt:  EEVEQTVQLVESVSDKHPDLLRPSARICSIFKGQEKDVSDHTKNKYTLLKDVEDLQIGLYDKPLPCFGCGVGWFSFLLGFLFPIMWYYATILYFWN-VRR

Query:  DPRERAGLAASAI
        DPRERAGLAASAI
Subjt:  DPRERAGLAASAI

AT5G57060.1 FUNCTIONS IN: molecular_function unknown1.2e-3158.49Show/hide
Query:  QLVESVSDKHPDLLRPSARICSIFKGQEKDVSDHTKNKYTLLKDVEDLQIGLYDKPLPCFGCGVGWFSFLLGFLFPIMWYYATILYFWN-VRRDPRERAG
        +LV+ ++D+H  L++ ++R  S      KD     K +YTL+KDV+D++ G YDKPLPCFGCG+GWFSFLLGF+FP +WYYA  LYF N  R+DPRERAG
Subjt:  QLVESVSDKHPDLLRPSARICSIFKGQEKDVSDHTKNKYTLLKDVEDLQIGLYDKPLPCFGCGVGWFSFLLGFLFPIMWYYATILYFWN-VRRDPRERAG

Query:  LAASAI
        LAASAI
Subjt:  LAASAI

AT5G57060.2 BEST Arabidopsis thaliana protein match is: Ribosomal protein L18ae family (TAIR:AT4G26060.1)9.7e-2970.51Show/hide
Query:  KDVSDHTKNKYTLLKDVEDLQIGLYDKPLPCFGCGVGWFSFLLGFLFPIMWYYATILYFWN-VRRDPRERAGLAASAI
        KD     K +YTL+KDV+D++ G YDKPLPCFGCG+GWFSFLLGF+FP +WYYA  LYF N  R+DPRERAGLAASAI
Subjt:  KDVSDHTKNKYTLLKDVEDLQIGLYDKPLPCFGCGVGWFSFLLGFLFPIMWYYATILYFWN-VRRDPRERAGLAASAI


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGAGGGATGAAGAAGTTGAGCAGACAGTGCAACTGGTGGAATCGGTCTCTGATAAGCATCCTGATCTTTTGAGGCCATCTGCCCGGATTTGTTCCATATTCAAAGGCCA
AGAAAAAGATGTGTCTGACCATACAAAGAACAAGTATACTCTTCTCAAAGATGTCGAGGATTTGCAAATAGGTCTATATGACAAGCCTCTTCCGTGTTTTGGCTGTGGTG
TTGGATGGTTCTCTTTCCTTCTCGGGTTTTTGTTCCCAATAATGTGGTACTATGCCACAATTCTCTACTTCTGGAACGTCCGCAGAGATCCCAGGGAACGAGCTGGTTTA
GCTGCGTCTGCCATTGCTGTAAGCATTTGCATGTTCGGTCATCTTGTTAGTCATCGTAGCTGTTCTCCTATTATAGCCCTCCCCTGTCTCTCGACTCGCACTGCATTCTC
TTTGCCCCTTCAACCTTGGCAATACAGTCCCAAACAGAACAGCTTCCGTGGCTATGAAGATAAAGATCAAGGGGCTCTGTTGCGGGACAATGGTGATTTCTTTTACTTTT
CTTTACATCAAATGTAA
mRNA sequenceShow/hide mRNA sequence
ATGAGGGATGAAGAAGTTGAGCAGACAGTGCAACTGGTGGAATCGGTCTCTGATAAGCATCCTGATCTTTTGAGGCCATCTGCCCGGATTTGTTCCATATTCAAAGGCCA
AGAAAAAGATGTGTCTGACCATACAAAGAACAAGTATACTCTTCTCAAAGATGTCGAGGATTTGCAAATAGGTCTATATGACAAGCCTCTTCCGTGTTTTGGCTGTGGTG
TTGGATGGTTCTCTTTCCTTCTCGGGTTTTTGTTCCCAATAATGTGGTACTATGCCACAATTCTCTACTTCTGGAACGTCCGCAGAGATCCCAGGGAACGAGCTGGTTTA
GCTGCGTCTGCCATTGCTGTAAGCATTTGCATGTTCGGTCATCTTGTTAGTCATCGTAGCTGTTCTCCTATTATAGCCCTCCCCTGTCTCTCGACTCGCACTGCATTCTC
TTTGCCCCTTCAACCTTGGCAATACAGTCCCAAACAGAACAGCTTCCGTGGCTATGAAGATAAAGATCAAGGGGCTCTGTTGCGGGACAATGGTGATTTCTTTTACTTTT
CTTTACATCAAATGTAAATGTTTATAAATCATATTTACATATATTTGCCACCTCTTTCAAGAGAGAGTTGTCACATTTGTATCACACAAAGAACATATAATACATGGATC
TTATTTTATCCCAAGTTTACTACGTAATCTAATAAACAAAAC
Protein sequenceShow/hide protein sequence
MRDEEVEQTVQLVESVSDKHPDLLRPSARICSIFKGQEKDVSDHTKNKYTLLKDVEDLQIGLYDKPLPCFGCGVGWFSFLLGFLFPIMWYYATILYFWNVRRDPRERAGL
AASAIAVSICMFGHLVSHRSCSPIIALPCLSTRTAFSLPLQPWQYSPKQNSFRGYEDKDQGALLRDNGDFFYFSLHQM