; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

CmoCh13G000620 (gene) of Cucurbita moschata (Rifu) v1 genome

Gene IDCmoCh13G000620
OrganismCucurbita moschata Rifu (Cucurbita moschata (Rifu) v1)
Description60S acidic ribosomal protein P0
Genome locationCmo_Chr13:382820..383400
RNA-Seq ExpressionCmoCh13G000620
SyntenyCmoCh13G000620
Gene Ontology termsGO:0000027 - ribosomal large subunit assembly (biological process)
GO:0002181 - cytoplasmic translation (biological process)
GO:0022625 - cytosolic large ribosomal subunit (cellular component)
GO:0003735 - structural constituent of ribosome (molecular function)
GO:0016829 - lyase activity (molecular function)
GO:0070180 - large ribosomal subunit rRNA binding (molecular function)
InterPro domainsIPR001790 - Ribosomal protein L10P
IPR043141 - Ribosomal protein L10-like domain superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0031813.1 60S acidic ribosomal protein P0-like [Cucumis melo var. makuwa]4.5e-4891.89Show/hide
Query:  MVVKPTRAQKKTQYDKKLCRLLEEYSHVLIVGADNVGSNQLQSIRKGLRGDSIILMGKNTMMKRSIRIHSEKTGNSAVMNLLPQLVGNVGLIFTKGDLKE
        MV+KPTRAQKKT YD+KLCRLL+EYS VLIVGADNVGSNQLQSIRKGLRGDSIILMGKNTMMKRSIRIHSEKTGN+AV NLLP LVGNVGLIFTKGDLKE
Subjt:  MVVKPTRAQKKTQYDKKLCRLLEEYSHVLIVGADNVGSNQLQSIRKGLRGDSIILMGKNTMMKRSIRIHSEKTGNSAVMNLLPQLVGNVGLIFTKGDLKE

Query:  VKEEVAKYKVL
        VKEEVAKYKV+
Subjt:  VKEEVAKYKVL

XP_008457380.1 PREDICTED: 60S acidic ribosomal protein P0-like [Cucumis melo]5.8e-4892.73Show/hide
Query:  MVVKPTRAQKKTQYDKKLCRLLEEYSHVLIVGADNVGSNQLQSIRKGLRGDSIILMGKNTMMKRSIRIHSEKTGNSAVMNLLPQLVGNVGLIFTKGDLKE
        MV+KPTRAQKKT YD+KLCRLL+EYS VLIVGADNVGSNQLQSIRKGLRGDSIILMGKNTMMKRSIRIHSEKTGN+AV NLLP LVGNVGLIFTKGDLKE
Subjt:  MVVKPTRAQKKTQYDKKLCRLLEEYSHVLIVGADNVGSNQLQSIRKGLRGDSIILMGKNTMMKRSIRIHSEKTGNSAVMNLLPQLVGNVGLIFTKGDLKE

Query:  VKEEVAKYKV
        VKEEVAKYKV
Subjt:  VKEEVAKYKV

XP_022964942.1 60S acidic ribosomal protein P0-like [Cucurbita moschata]3.0e-52100Show/hide
Query:  MVVKPTRAQKKTQYDKKLCRLLEEYSHVLIVGADNVGSNQLQSIRKGLRGDSIILMGKNTMMKRSIRIHSEKTGNSAVMNLLPQLVGNVGLIFTKGDLKE
        MVVKPTRAQKKTQYDKKLCRLLEEYSHVLIVGADNVGSNQLQSIRKGLRGDSIILMGKNTMMKRSIRIHSEKTGNSAVMNLLPQLVGNVGLIFTKGDLKE
Subjt:  MVVKPTRAQKKTQYDKKLCRLLEEYSHVLIVGADNVGSNQLQSIRKGLRGDSIILMGKNTMMKRSIRIHSEKTGNSAVMNLLPQLVGNVGLIFTKGDLKE

Query:  VKEEVAKYKV
        VKEEVAKYKV
Subjt:  VKEEVAKYKV

XP_022970458.1 60S acidic ribosomal protein P0-like [Cucurbita maxima]2.5e-5198.18Show/hide
Query:  MVVKPTRAQKKTQYDKKLCRLLEEYSHVLIVGADNVGSNQLQSIRKGLRGDSIILMGKNTMMKRSIRIHSEKTGNSAVMNLLPQLVGNVGLIFTKGDLKE
        MV+KPTRAQKKTQYD KLCRLLEEYSHVLIVGADNVGSNQLQSIRKGLRGDSIILMGKNTMMKRSIRIHSEKTGNSAVMNLLPQLVGNVGLIFTKGDLKE
Subjt:  MVVKPTRAQKKTQYDKKLCRLLEEYSHVLIVGADNVGSNQLQSIRKGLRGDSIILMGKNTMMKRSIRIHSEKTGNSAVMNLLPQLVGNVGLIFTKGDLKE

Query:  VKEEVAKYKV
        VKEEVAKYKV
Subjt:  VKEEVAKYKV

XP_038895318.1 60S acidic ribosomal protein P0-like [Benincasa hispida]1.5e-4893.64Show/hide
Query:  MVVKPTRAQKKTQYDKKLCRLLEEYSHVLIVGADNVGSNQLQSIRKGLRGDSIILMGKNTMMKRSIRIHSEKTGNSAVMNLLPQLVGNVGLIFTKGDLKE
        MV+KPTRAQKK QYD+KLCRLLEEYS VLIVGADNVGSNQLQSIRKGLRGDSI+LMGKNTMMKRSIRIHSEKTGNSAV NLLP LVGNVGLIFTKGDLKE
Subjt:  MVVKPTRAQKKTQYDKKLCRLLEEYSHVLIVGADNVGSNQLQSIRKGLRGDSIILMGKNTMMKRSIRIHSEKTGNSAVMNLLPQLVGNVGLIFTKGDLKE

Query:  VKEEVAKYKV
        VKEEVAKYKV
Subjt:  VKEEVAKYKV

TrEMBL top hitse value%identityAlignment
A0A1S3C6N6 60S acidic ribosomal protein P02.8e-4892.73Show/hide
Query:  MVVKPTRAQKKTQYDKKLCRLLEEYSHVLIVGADNVGSNQLQSIRKGLRGDSIILMGKNTMMKRSIRIHSEKTGNSAVMNLLPQLVGNVGLIFTKGDLKE
        MV+KPTRAQKKT YD+KLCRLL+EYS VLIVGADNVGSNQLQSIRKGLRGDSIILMGKNTMMKRSIRIHSEKTGN+AV NLLP LVGNVGLIFTKGDLKE
Subjt:  MVVKPTRAQKKTQYDKKLCRLLEEYSHVLIVGADNVGSNQLQSIRKGLRGDSIILMGKNTMMKRSIRIHSEKTGNSAVMNLLPQLVGNVGLIFTKGDLKE

Query:  VKEEVAKYKV
        VKEEVAKYKV
Subjt:  VKEEVAKYKV

A0A5A7SNJ3 60S acidic ribosomal protein P02.2e-4891.89Show/hide
Query:  MVVKPTRAQKKTQYDKKLCRLLEEYSHVLIVGADNVGSNQLQSIRKGLRGDSIILMGKNTMMKRSIRIHSEKTGNSAVMNLLPQLVGNVGLIFTKGDLKE
        MV+KPTRAQKKT YD+KLCRLL+EYS VLIVGADNVGSNQLQSIRKGLRGDSIILMGKNTMMKRSIRIHSEKTGN+AV NLLP LVGNVGLIFTKGDLKE
Subjt:  MVVKPTRAQKKTQYDKKLCRLLEEYSHVLIVGADNVGSNQLQSIRKGLRGDSIILMGKNTMMKRSIRIHSEKTGNSAVMNLLPQLVGNVGLIFTKGDLKE

Query:  VKEEVAKYKVL
        VKEEVAKYKV+
Subjt:  VKEEVAKYKVL

A0A5D3BFC6 60S acidic ribosomal protein P02.8e-4892.73Show/hide
Query:  MVVKPTRAQKKTQYDKKLCRLLEEYSHVLIVGADNVGSNQLQSIRKGLRGDSIILMGKNTMMKRSIRIHSEKTGNSAVMNLLPQLVGNVGLIFTKGDLKE
        MV+KPTRAQKKT YD+KLCRLL+EYS VLIVGADNVGSNQLQSIRKGLRGDSIILMGKNTMMKRSIRIHSEKTGN+AV NLLP LVGNVGLIFTKGDLKE
Subjt:  MVVKPTRAQKKTQYDKKLCRLLEEYSHVLIVGADNVGSNQLQSIRKGLRGDSIILMGKNTMMKRSIRIHSEKTGNSAVMNLLPQLVGNVGLIFTKGDLKE

Query:  VKEEVAKYKV
        VKEEVAKYKV
Subjt:  VKEEVAKYKV

A0A6J1HJ11 60S acidic ribosomal protein P01.4e-52100Show/hide
Query:  MVVKPTRAQKKTQYDKKLCRLLEEYSHVLIVGADNVGSNQLQSIRKGLRGDSIILMGKNTMMKRSIRIHSEKTGNSAVMNLLPQLVGNVGLIFTKGDLKE
        MVVKPTRAQKKTQYDKKLCRLLEEYSHVLIVGADNVGSNQLQSIRKGLRGDSIILMGKNTMMKRSIRIHSEKTGNSAVMNLLPQLVGNVGLIFTKGDLKE
Subjt:  MVVKPTRAQKKTQYDKKLCRLLEEYSHVLIVGADNVGSNQLQSIRKGLRGDSIILMGKNTMMKRSIRIHSEKTGNSAVMNLLPQLVGNVGLIFTKGDLKE

Query:  VKEEVAKYKV
        VKEEVAKYKV
Subjt:  VKEEVAKYKV

A0A6J1I3W8 60S acidic ribosomal protein P01.2e-5198.18Show/hide
Query:  MVVKPTRAQKKTQYDKKLCRLLEEYSHVLIVGADNVGSNQLQSIRKGLRGDSIILMGKNTMMKRSIRIHSEKTGNSAVMNLLPQLVGNVGLIFTKGDLKE
        MV+KPTRAQKKTQYD KLCRLLEEYSHVLIVGADNVGSNQLQSIRKGLRGDSIILMGKNTMMKRSIRIHSEKTGNSAVMNLLPQLVGNVGLIFTKGDLKE
Subjt:  MVVKPTRAQKKTQYDKKLCRLLEEYSHVLIVGADNVGSNQLQSIRKGLRGDSIILMGKNTMMKRSIRIHSEKTGNSAVMNLLPQLVGNVGLIFTKGDLKE

Query:  VKEEVAKYKV
        VKEEVAKYKV
Subjt:  VKEEVAKYKV

SwissProt top hitse value%identityAlignment
O04204 60S acidic ribosomal protein P0-16.5e-4275.45Show/hide
Query:  MVVKPTRAQKKTQYDKKLCRLLEEYSHVLIVGADNVGSNQLQSIRKGLRGDSIILMGKNTMMKRSIRIHSEKTGNSAVMNLLPQLVGNVGLIFTKGDLKE
        M VK T+A+KK  YD KLC+LL EYS +L+V ADNVGS QLQ+IRKGLRGDS++LMGKNTMMKRS+RIH++KTGN A ++LLP L GNVGLIFTKGDLKE
Subjt:  MVVKPTRAQKKTQYDKKLCRLLEEYSHVLIVGADNVGSNQLQSIRKGLRGDSIILMGKNTMMKRSIRIHSEKTGNSAVMNLLPQLVGNVGLIFTKGDLKE

Query:  VKEEVAKYKV
        V EEVAKYKV
Subjt:  VKEEVAKYKV

P50345 60S acidic ribosomal protein P01.2e-4072.73Show/hide
Query:  MVVKPTRAQKKTQYDKKLCRLLEEYSHVLIVGADNVGSNQLQSIRKGLRGDSIILMGKNTMMKRSIRIHSEKTGNSAVMNLLPQLVGNVGLIFTKGDLKE
        M  K T+A+KK  YD KLC+LL+EY+ +L+V ADNVGS QLQ+IR+GLRGDS++LMGKNTMMKRS+RIH+EKTGN A +NL+P L+GNVGLIFTKG LKE
Subjt:  MVVKPTRAQKKTQYDKKLCRLLEEYSHVLIVGADNVGSNQLQSIRKGLRGDSIILMGKNTMMKRSIRIHSEKTGNSAVMNLLPQLVGNVGLIFTKGDLKE

Query:  VKEEVAKYKV
        V EEVAKYKV
Subjt:  VKEEVAKYKV

P50346 60S acidic ribosomal protein P02.9e-4274.55Show/hide
Query:  MVVKPTRAQKKTQYDKKLCRLLEEYSHVLIVGADNVGSNQLQSIRKGLRGDSIILMGKNTMMKRSIRIHSEKTGNSAVMNLLPQLVGNVGLIFTKGDLKE
        M  K T+A+KK  YD KLC L+EEY  +L+V +DNVGSNQLQ+IRKGLRGDS++LMGKNTMMKRS+R+H+EKTGN+A +NL+P LVGNVGLIFTKGDLKE
Subjt:  MVVKPTRAQKKTQYDKKLCRLLEEYSHVLIVGADNVGSNQLQSIRKGLRGDSIILMGKNTMMKRSIRIHSEKTGNSAVMNLLPQLVGNVGLIFTKGDLKE

Query:  VKEEVAKYKV
        V EEVAKYKV
Subjt:  VKEEVAKYKV

P57691 60S acidic ribosomal protein P0-36.5e-4274.31Show/hide
Query:  VVKPTRAQKKTQYDKKLCRLLEEYSHVLIVGADNVGSNQLQSIRKGLRGDSIILMGKNTMMKRSIRIHSEKTGNSAVMNLLPQLVGNVGLIFTKGDLKEV
        +VK T+A+KK  YD KLC+L++EY+ +L+V ADNVGS QLQ+IRKGLRGDS++LMGKNTMMKRS+RIHSE +GN+A++NLLP L GNVGLIFTKGDLKEV
Subjt:  VVKPTRAQKKTQYDKKLCRLLEEYSHVLIVGADNVGSNQLQSIRKGLRGDSIILMGKNTMMKRSIRIHSEKTGNSAVMNLLPQLVGNVGLIFTKGDLKEV

Query:  KEEVAKYKV
         EEVAKYKV
Subjt:  KEEVAKYKV

Q42112 60S acidic ribosomal protein P0-22.2e-4275.23Show/hide
Query:  VVKPTRAQKKTQYDKKLCRLLEEYSHVLIVGADNVGSNQLQSIRKGLRGDSIILMGKNTMMKRSIRIHSEKTGNSAVMNLLPQLVGNVGLIFTKGDLKEV
        +VK T+A+KK  YD KLC+L++EY+ +L+V ADNVGS QLQ+IRKGLRGDS++LMGKNTMMKRS+RIHSE TGN+A++NLLP L GNVGLIFTKGDLKEV
Subjt:  VVKPTRAQKKTQYDKKLCRLLEEYSHVLIVGADNVGSNQLQSIRKGLRGDSIILMGKNTMMKRSIRIHSEKTGNSAVMNLLPQLVGNVGLIFTKGDLKEV

Query:  KEEVAKYKV
         EEVAKYKV
Subjt:  KEEVAKYKV

Arabidopsis top hitse value%identityAlignment
AT2G40010.1 Ribosomal protein L10 family protein4.6e-4375.45Show/hide
Query:  MVVKPTRAQKKTQYDKKLCRLLEEYSHVLIVGADNVGSNQLQSIRKGLRGDSIILMGKNTMMKRSIRIHSEKTGNSAVMNLLPQLVGNVGLIFTKGDLKE
        M VK T+A+KK  YD KLC+LL EYS +L+V ADNVGS QLQ+IRKGLRGDS++LMGKNTMMKRS+RIH++KTGN A ++LLP L GNVGLIFTKGDLKE
Subjt:  MVVKPTRAQKKTQYDKKLCRLLEEYSHVLIVGADNVGSNQLQSIRKGLRGDSIILMGKNTMMKRSIRIHSEKTGNSAVMNLLPQLVGNVGLIFTKGDLKE

Query:  VKEEVAKYKV
        V EEVAKYKV
Subjt:  VKEEVAKYKV

AT3G09200.1 Ribosomal protein L10 family protein1.6e-4375.23Show/hide
Query:  VVKPTRAQKKTQYDKKLCRLLEEYSHVLIVGADNVGSNQLQSIRKGLRGDSIILMGKNTMMKRSIRIHSEKTGNSAVMNLLPQLVGNVGLIFTKGDLKEV
        +VK T+A+KK  YD KLC+L++EY+ +L+V ADNVGS QLQ+IRKGLRGDS++LMGKNTMMKRS+RIHSE TGN+A++NLLP L GNVGLIFTKGDLKEV
Subjt:  VVKPTRAQKKTQYDKKLCRLLEEYSHVLIVGADNVGSNQLQSIRKGLRGDSIILMGKNTMMKRSIRIHSEKTGNSAVMNLLPQLVGNVGLIFTKGDLKEV

Query:  KEEVAKYKV
         EEVAKYKV
Subjt:  KEEVAKYKV

AT3G09200.2 Ribosomal protein L10 family protein1.3e-2149.54Show/hide
Query:  VVKPTRAQKKTQYDKKLCRLLEEYSHVLIVGADNVGSNQLQSIRKGLRGDSIILMGKNTMMKRSIRIHSEKTGNSAVMNLLPQLVGNVGLIFTKGDLKEV
        +VK T+A+KK  YD KLC+L++EY+ +L+                                 RS+RIHSE TGN+A++NLLP L GNVGLIFTKGDLKEV
Subjt:  VVKPTRAQKKTQYDKKLCRLLEEYSHVLIVGADNVGSNQLQSIRKGLRGDSIILMGKNTMMKRSIRIHSEKTGNSAVMNLLPQLVGNVGLIFTKGDLKEV

Query:  KEEVAKYKV
         EEVAKYKV
Subjt:  KEEVAKYKV

AT3G11250.1 Ribosomal protein L10 family protein4.6e-4374.31Show/hide
Query:  VVKPTRAQKKTQYDKKLCRLLEEYSHVLIVGADNVGSNQLQSIRKGLRGDSIILMGKNTMMKRSIRIHSEKTGNSAVMNLLPQLVGNVGLIFTKGDLKEV
        +VK T+A+KK  YD KLC+L++EY+ +L+V ADNVGS QLQ+IRKGLRGDS++LMGKNTMMKRS+RIHSE +GN+A++NLLP L GNVGLIFTKGDLKEV
Subjt:  VVKPTRAQKKTQYDKKLCRLLEEYSHVLIVGADNVGSNQLQSIRKGLRGDSIILMGKNTMMKRSIRIHSEKTGNSAVMNLLPQLVGNVGLIFTKGDLKEV

Query:  KEEVAKYKV
         EEVAKYKV
Subjt:  KEEVAKYKV


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGTTGTCAAGCCCACCAGAGCTCAAAAGAAGACGCAGTACGACAAGAAACTCTGCCGCCTCCTGGAAGAGTACTCACATGTCCTCATCGTCGGCGCCGACAAT
GTTGGCTCCAATCAGCTTCAGAGTATTCGCAAGGGTCTTCGAGGCGATTCCATTATCCTCATGGGTAAGAACACTATGATGAAACGCTCCATAAGAATCCATTCT
GAAAAGACTGGTAATTCCGCCGTCATGAACCTCCTCCCCCAACTTGTGGGAAACGTGGGTTTGATCTTCACTAAAGGCGATTTGAAGGAAGTGAAGGAAGAGGTC
GCCAAGTACAAGGTATTGTGTTTGGATTTTATTTTATTTCATTTCCACTTTCTGCTCTGTGCTGTGATTTCCATGCCGGCTTTTACCCATACATTGCCTAATGCT
AGATTTGTAGTTTCCTTAAAAGTTATGTGCCCTATTCTGAGCTATTATTGTTCTCATAGAGAGTTATCGATATAA
mRNA sequenceShow/hide mRNA sequence
ATGGTTGTCAAGCCCACCAGAGCTCAAAAGAAGACGCAGTACGACAAGAAACTCTGCCGCCTCCTGGAAGAGTACTCACATGTCCTCATCGTCGGCGCCGACAAT
GTTGGCTCCAATCAGCTTCAGAGTATTCGCAAGGGTCTTCGAGGCGATTCCATTATCCTCATGGGTAAGAACACTATGATGAAACGCTCCATAAGAATCCATTCT
GAAAAGACTGGTAATTCCGCCGTCATGAACCTCCTCCCCCAACTTGTGGGAAACGTGGGTTTGATCTTCACTAAAGGCGATTTGAAGGAAGTGAAGGAAGAGGTC
GCCAAGTACAAGGTATTGTGTTTGGATTTTATTTTATTTCATTTCCACTTTCTGCTCTGTGCTGTGATTTCCATGCCGGCTTTTACCCATACATTGCCTAATGCT
AGATTTGTAGTTTCCTTAAAAGTTATGTGCCCTATTCTGAGCTATTATTGTTCTCATAGAGAGTTATCGATATAA
Protein sequenceShow/hide protein sequence
MVVKPTRAQKKTQYDKKLCRLLEEYSHVLIVGADNVGSNQLQSIRKGLRGDSIILMGKNTMMKRSIRIHSEKTGNSAVMNLLPQLVGNVGLIFTKGDLKEVKEEV
AKYKVLCLDFILFHFHFLLCAVISMPAFTHTLPNARFVVSLKVMCPILSYYCSHRELSI