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CmoCh13G000890 (gene) of Cucurbita moschata (Rifu) v1 genome

Gene IDCmoCh13G000890
OrganismCucurbita moschata Rifu (Cucurbita moschata (Rifu) v1)
DescriptionDNA-directed RNA polymerases I and III subunit RPAC2-like
Genome locationCmo_Chr13:534477..536000
RNA-Seq ExpressionCmoCh13G000890
SyntenyCmoCh13G000890
Gene Ontology termsGO:0006351 - transcription, DNA-templated (biological process)
GO:0005666 - RNA polymerase III complex (cellular component)
GO:0005736 - RNA polymerase I complex (cellular component)
GO:0003677 - DNA binding (molecular function)
GO:0003899 - DNA-directed 5'-3' RNA polymerase activity (molecular function)
GO:0046983 - protein dimerization activity (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAE8652742.1 hypothetical protein Csa_014245 [Cucumis sativus]5.1e-1277.08Show/hide
Query:  LKNTSDPAREVLKDACQNFMVVCHHVRNTFDKVVLDFKPTNPVGNINI
        ++ T DPAREVLKDACQN MVVC HVRNTFDK VLD K TNPV +INI
Subjt:  LKNTSDPAREVLKDACQNFMVVCHHVRNTFDKVVLDFKPTNPVGNINI
XP_004147276.2 DNA-directed RNA polymerases I and III subunit RPAC2 [Cucumis sativus]5.1e-1277.08Show/hide
Query:  LKNTSDPAREVLKDACQNFMVVCHHVRNTFDKVVLDFKPTNPVGNINI
        ++ T DPAREVLKDACQN MVVC HVRNTFDK VLD K TNPV +INI
Subjt:  LKNTSDPAREVLKDACQNFMVVCHHVRNTFDKVVLDFKPTNPVGNINI
XP_022150895.1 DNA-directed RNA polymerases I and III subunit RPAC2 [Momordica charantia]1.5e-1175Show/hide
Query:  LKNTSDPAREVLKDACQNFMVVCHHVRNTFDKVVLDFKPTNPVGNINI
        ++ T D AREVLKD+CQN MVVC HVRNTFDK VLDFK T PVG+INI
Subjt:  LKNTSDPAREVLKDACQNFMVVCHHVRNTFDKVVLDFKPTNPVGNINI
XP_022970382.1 DNA-directed RNA polymerases I and III subunit RPAC2-like [Cucurbita maxima]8.1e-1862.82Show/hide
Query:  CIHEKYSLWLYAKC------------DPFLKNTSDPAREVLKDACQNFMVVCHHVRNTFDKVVLDFKPTNPVGNININ
        C H +Y+L+    C            +  ++ T DPAREVLKDACQNFMVVCHHVRNTFDK VLDFKPTNPVGNININ
Subjt:  CIHEKYSLWLYAKC------------DPFLKNTSDPAREVLKDACQNFMVVCHHVRNTFDKVVLDFKPTNPVGNININ
XP_038893936.1 DNA-directed RNA polymerases I and III subunit RPAC2 [Benincasa hispida]2.3e-1277.08Show/hide
Query:  LKNTSDPAREVLKDACQNFMVVCHHVRNTFDKVVLDFKPTNPVGNINI
        ++ T DPAREVLKDACQN MVVC HVRNTFDK VLD K T PVG+INI
Subjt:  LKNTSDPAREVLKDACQNFMVVCHHVRNTFDKVVLDFKPTNPVGNINI
TrEMBL top hitse value%identityAlignment
A0A0A0LUT5 RNA_pol_L_2 domain-containing protein2.5e-1277.08Show/hide
Query:  LKNTSDPAREVLKDACQNFMVVCHHVRNTFDKVVLDFKPTNPVGNINI
        ++ T DPAREVLKDACQN MVVC HVRNTFDK VLD K TNPV +INI
Subjt:  LKNTSDPAREVLKDACQNFMVVCHHVRNTFDKVVLDFKPTNPVGNINI
A0A6J1D9Q8 DNA-directed RNA polymerases I and III subunit RPAC27.2e-1275Show/hide
Query:  LKNTSDPAREVLKDACQNFMVVCHHVRNTFDKVVLDFKPTNPVGNINI
        ++ T D AREVLKD+CQN MVVC HVRNTFDK VLDFK T PVG+INI
Subjt:  LKNTSDPAREVLKDACQNFMVVCHHVRNTFDKVVLDFKPTNPVGNINI
A0A6J1G901 DNA-directed RNA polymerases I and III subunit RPAC22.1e-1172.92Show/hide
Query:  LKNTSDPAREVLKDACQNFMVVCHHVRNTFDKVVLDFKPTNPVGNINI
        ++ T DPAREVLKDACQN M VC HVRNT DK VLD K T PVG+INI
Subjt:  LKNTSDPAREVLKDACQNFMVVCHHVRNTFDKVVLDFKPTNPVGNINI
A0A6J1HYX9 DNA-directed RNA polymerases I and III subunit RPAC2-like3.9e-1862.82Show/hide
Query:  CIHEKYSLWLYAKC------------DPFLKNTSDPAREVLKDACQNFMVVCHHVRNTFDKVVLDFKPTNPVGNININ
        C H +Y+L+    C            +  ++ T DPAREVLKDACQNFMVVCHHVRNTFDK VLDFKPTNPVGNININ
Subjt:  CIHEKYSLWLYAKC------------DPFLKNTSDPAREVLKDACQNFMVVCHHVRNTFDKVVLDFKPTNPVGNININ
A0A6J1KDK3 DNA-directed RNA polymerases I and III subunit RPAC22.1e-1172.92Show/hide
Query:  LKNTSDPAREVLKDACQNFMVVCHHVRNTFDKVVLDFKPTNPVGNINI
        ++ T DPAREVLKDACQN M VC HVRNT DK VLD K T PVG+INI
Subjt:  LKNTSDPAREVLKDACQNFMVVCHHVRNTFDKVVLDFKPTNPVGNINI
SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
AT2G29540.1 RNApolymerase 14 kDa subunit5.3e-0755.26Show/hide
Query:  LKNTSDPAREVLKDACQNFMVVCHHVRNTFDKVVLDFK
        ++ T DPAREV KDACQ  M +  HVR+ FDK V ++K
Subjt:  LKNTSDPAREVLKDACQNFMVVCHHVRNTFDKVVLDFK
AT2G29540.2 RNApolymerase 14 kDa subunit5.3e-0755.26Show/hide
Query:  LKNTSDPAREVLKDACQNFMVVCHHVRNTFDKVVLDFK
        ++ T DPAREV KDACQ  M +  HVR+ FDK V ++K
Subjt:  LKNTSDPAREVLKDACQNFMVVCHHVRNTFDKVVLDFK
AT2G29540.3 RNApolymerase 14 kDa subunit5.3e-0755.26Show/hide
Query:  LKNTSDPAREVLKDACQNFMVVCHHVRNTFDKVVLDFK
        ++ T DPAREV KDACQ  M +  HVR+ FDK V ++K
Subjt:  LKNTSDPAREVLKDACQNFMVVCHHVRNTFDKVVLDFK

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGCCTCTTTTAGGAGTAACATCCGGACGGAGTCTAGACAACAAACTTGTTCTGGCCTGTTTTTCTTCTTTATACACATCCAATTTATGCATTCATGAGAAATAT
AGTCTATGGCTCTATGCGAAATGTGATCCTTTTCTAAAGAACACAAGTGATCCTGCAAGAGAGGTTCTGAAAGATGCGTGTCAGAACTTCATGGTGGTCTGCCAC
CATGTGAGGAACACATTCGACAAGGTTGTGCTTGATTTCAAACCCACCAATCCTGTGGGGAACATTAATATCAATTAG
mRNA sequenceShow/hide mRNA sequence
ATGCCTCTTTTAGGAGTAACATCCGGACGGAGTCTAGACAACAAACTTGTTCTGGCCTGTTTTTCTTCTTTATACACATCCAATTTATGCATTCATGAGAAATAT
AGTCTATGGCTCTATGCGAAATGTGATCCTTTTCTAAAGAACACAAGTGATCCTGCAAGAGAGGTTCTGAAAGATGCGTGTCAGAACTTCATGGTGGTCTGCCAC
CATGTGAGGAACACATTCGACAAGGTTGTGCTTGATTTCAAACCCACCAATCCTGTGGGGAACATTAATATCAATTAGAATGGGACCCTTTTTCTCTTTCAACTT
GTAACTTTCTTTCTTAGGCTCATCTATATTGCAGTTTACAGGTGATTGAGTTGGTTAGCTAATGGTGAGATTCCACATCGGTTGGAGAGGGAAACGAACCATTCC
TTATAAGAGTGTGAAAATTTCTTCCTAGTAAATACGTTTTAAAACCGTGAGGCTGAAGACGATACGTAATGGGCTAAAGCAGACAATATTTGTTAATGATGAGTT
TGGGCTGTTTCAAATGGGATTAGAGTTAGACGCTGGGCAATGTGCCAACGAGGACACTAGGCCCTCAAAGGGTAGATCGTGAGATCCCACATTGGTTGGAGAGAG
GAAGAAACATTCCTTGTAAAGATGTGGAAATCTCTCCTTAGTAGACGCGTTTTAAAACTGTGAGGTTGATGAGCTTGGACTGTTACAAATGGCTTCTAGAACAGA
TTCGTTTCGTTGAATTTTGCTTGCTTTTACTGTTGAGATGCCTATGCACAGGGATTTCACGTTAATTATTGTATATTGTAGATCCATGTGAAAAGTAAAAGAAAC
AGGTATGATCGAATTTGATTGGATGTTTATGTGAGAAATCTCCC
Protein sequenceShow/hide protein sequence
MPLLGVTSGRSLDNKLVLACFSSLYTSNLCIHEKYSLWLYAKCDPFLKNTSDPAREVLKDACQNFMVVCHHVRNTFDKVVLDFKPTNPVGNININ