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CmoCh13G000960 (gene) of Cucurbita moschata (Rifu) v1 genome

Gene IDCmoCh13G000960
OrganismCucurbita moschata Rifu (Cucurbita moschata (Rifu) v1)
DescriptionMaternal effect embryo arrest 60
Genome locationCmo_Chr13:558904..559443
RNA-Seq ExpressionCmoCh13G000960
SyntenyCmoCh13G000960
Gene Ontology termsGO:0016021 - integral component of membrane (cellular component)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG7019165.1 hypothetical protein SDJN02_18123, partial [Cucurbita argyrosperma subsp. argyrosperma]5.1e-90100Show/hide
Query:  MSVVPRRRSSSTRIHVMALDGIVNVNSLFTFAVFLGITWYPTADPAVNLLPDGDDGPCAPAAAAAQSLIACHVYSFSCFLFSSLVASALKQAIRIIGRDD
        MSVVPRRRSSSTRIHVMALDGIVNVNSLFTFAVFLGITWYPTADPAVNLLPDGDDGPCAPAAAAAQSLIACHVYSFSCFLFSSLVASALKQAIRIIGRDD
Subjt:  MSVVPRRRSSSTRIHVMALDGIVNVNSLFTFAVFLGITWYPTADPAVNLLPDGDDGPCAPAAAAAQSLIACHVYSFSCFLFSSLVASALKQAIRIIGRDD

Query:  GEHGVAYAPALRMGMVASAVGSVLGCGFLVAALLNLVQIKLGTLSCRRWETVAAAVPLVSLVPMALFIYIVLVLHAFTR
        GEHGVAYAPALRMGMVASAVGSVLGCGFLVAALLNLVQIKLGTLSCRRWETVAAAVPLVSLVPMALFIYIVLVLHAFTR
Subjt:  GEHGVAYAPALRMGMVASAVGSVLGCGFLVAALLNLVQIKLGTLSCRRWETVAAAVPLVSLVPMALFIYIVLVLHAFTR

XP_011658339.1 uncharacterized protein LOC101206623 [Cucumis sativus]1.2e-7381.56Show/hide
Query:  MSVVPRRRSSSTRIHVMALDGIVNVNSLFTFAVFLGITWYPTADPAVNLLPDGDDGPCAPAAAAAQSLIACHVYSFSCFLFSSLVASALKQAIRIIGRDD
        MSVVPRRRS+STRIH++ALDGIVNVNSLFTFAVFLG+ WYPTA+PA NLLPD DDGPCA A + A++LIACHVYSFSCFLFSSL+ASALKQAIR+I   D
Subjt:  MSVVPRRRSSSTRIHVMALDGIVNVNSLFTFAVFLGITWYPTADPAVNLLPDGDDGPCAPAAAAAQSLIACHVYSFSCFLFSSLVASALKQAIRIIGRDD

Query:  GEHGVAYAPALRMGMVASAVGSVLGCGFLVAALLNLVQIKLGTLSCRRWETVAAAVPLVSLVPMALFIYIVLVLHAFTR
        G  G  +APALR+GM+ASAVGSVLGCGFLVAALLNL+QIKLG   CRRWETVAAAVPLVSLVP+ALFIYI LV+HAFTR
Subjt:  GEHGVAYAPALRMGMVASAVGSVLGCGFLVAALLNLVQIKLGTLSCRRWETVAAAVPLVSLVPMALFIYIVLVLHAFTR

XP_022964979.1 uncharacterized protein LOC111464928 [Cucurbita moschata]5.1e-90100Show/hide
Query:  MSVVPRRRSSSTRIHVMALDGIVNVNSLFTFAVFLGITWYPTADPAVNLLPDGDDGPCAPAAAAAQSLIACHVYSFSCFLFSSLVASALKQAIRIIGRDD
        MSVVPRRRSSSTRIHVMALDGIVNVNSLFTFAVFLGITWYPTADPAVNLLPDGDDGPCAPAAAAAQSLIACHVYSFSCFLFSSLVASALKQAIRIIGRDD
Subjt:  MSVVPRRRSSSTRIHVMALDGIVNVNSLFTFAVFLGITWYPTADPAVNLLPDGDDGPCAPAAAAAQSLIACHVYSFSCFLFSSLVASALKQAIRIIGRDD

Query:  GEHGVAYAPALRMGMVASAVGSVLGCGFLVAALLNLVQIKLGTLSCRRWETVAAAVPLVSLVPMALFIYIVLVLHAFTR
        GEHGVAYAPALRMGMVASAVGSVLGCGFLVAALLNLVQIKLGTLSCRRWETVAAAVPLVSLVPMALFIYIVLVLHAFTR
Subjt:  GEHGVAYAPALRMGMVASAVGSVLGCGFLVAALLNLVQIKLGTLSCRRWETVAAAVPLVSLVPMALFIYIVLVLHAFTR

XP_022970573.1 uncharacterized protein LOC111469508 [Cucurbita maxima]1.0e-8292.74Show/hide
Query:  MSVVPRRRSSSTRIHVMALDGIVNVNSLFTFAVFLGITWYPTADPAVNLLPDGDDGPCAPAAAAAQSLIACHVYSFSCFLFSSLVASALKQAIRIIGRDD
        MSVVPRRRSSSTRIHVMALDGIVNVNSLFTFAVFLGITWYPTADP VNLLPD DDGPCAPAAAAAQSLIACHVYSFSCFLFSSLVASALKQAIRIIG +D
Subjt:  MSVVPRRRSSSTRIHVMALDGIVNVNSLFTFAVFLGITWYPTADPAVNLLPDGDDGPCAPAAAAAQSLIACHVYSFSCFLFSSLVASALKQAIRIIGRDD

Query:  GEHGVAYAPALRMGMVASAVGSVLGCGFLVAALLNLVQIKLGTLSCRRWETVAAAVPLVSLVPMALFIYIVLVLHAFTR
        G HG  +APALR+GMVASAVGSVLGCGFLVAALLNLVQIKLG   CRRWETVAA VPLVSLVPMALFIYIVLVLHAFTR
Subjt:  GEHGVAYAPALRMGMVASAVGSVLGCGFLVAALLNLVQIKLGTLSCRRWETVAAAVPLVSLVPMALFIYIVLVLHAFTR

XP_023519302.1 uncharacterized protein LOC111782741 [Cucurbita pepo subsp. pepo]9.7e-8998.88Show/hide
Query:  MSVVPRRRSSSTRIHVMALDGIVNVNSLFTFAVFLGITWYPTADPAVNLLPDGDDGPCAPAAAAAQSLIACHVYSFSCFLFSSLVASALKQAIRIIGRDD
        MSVVPRRRSSSTRIHVMALDGIVNVNSLFTFAVFLGITWYPTADPAVNLLPD DDGPCAPAAAAAQSLIACHVYSFSCFLFSSLVASALKQAIRIIGRDD
Subjt:  MSVVPRRRSSSTRIHVMALDGIVNVNSLFTFAVFLGITWYPTADPAVNLLPDGDDGPCAPAAAAAQSLIACHVYSFSCFLFSSLVASALKQAIRIIGRDD

Query:  GEHGVAYAPALRMGMVASAVGSVLGCGFLVAALLNLVQIKLGTLSCRRWETVAAAVPLVSLVPMALFIYIVLVLHAFTR
        GEHGVAYAPALR+GMVASAVGSVLGCGFLVAALLNLVQIKLGTLSCRRWETVAAAVPLVSLVPMALFIYIVLVLHAFTR
Subjt:  GEHGVAYAPALRMGMVASAVGSVLGCGFLVAALLNLVQIKLGTLSCRRWETVAAAVPLVSLVPMALFIYIVLVLHAFTR

TrEMBL top hitse value%identityAlignment
A0A0A0LV03 Uncharacterized protein5.6e-7481.56Show/hide
Query:  MSVVPRRRSSSTRIHVMALDGIVNVNSLFTFAVFLGITWYPTADPAVNLLPDGDDGPCAPAAAAAQSLIACHVYSFSCFLFSSLVASALKQAIRIIGRDD
        MSVVPRRRS+STRIH++ALDGIVNVNSLFTFAVFLG+ WYPTA+PA NLLPD DDGPCA A + A++LIACHVYSFSCFLFSSL+ASALKQAIR+I   D
Subjt:  MSVVPRRRSSSTRIHVMALDGIVNVNSLFTFAVFLGITWYPTADPAVNLLPDGDDGPCAPAAAAAQSLIACHVYSFSCFLFSSLVASALKQAIRIIGRDD

Query:  GEHGVAYAPALRMGMVASAVGSVLGCGFLVAALLNLVQIKLGTLSCRRWETVAAAVPLVSLVPMALFIYIVLVLHAFTR
        G  G  +APALR+GM+ASAVGSVLGCGFLVAALLNL+QIKLG   CRRWETVAAAVPLVSLVP+ALFIYI LV+HAFTR
Subjt:  GEHGVAYAPALRMGMVASAVGSVLGCGFLVAALLNLVQIKLGTLSCRRWETVAAAVPLVSLVPMALFIYIVLVLHAFTR

A0A1S3C532 uncharacterized protein LOC1034971227.3e-7483.24Show/hide
Query:  MSVVPRRRSSSTRIHVMALDGIVNVNSLFTFAVFLGITWYPTADPAVNLLPDGDDGPCAPAAAAAQSLIACHVYSFSCFLFSSLVASALKQAIRIIGRDD
        MSVVPRRRS+STRIH++ALDGIVNVNSLFTFAVFLG+ WYPTA+PA NLLPD DDGPCA A + AQ+LIACHVYSFSCFLFSSL+ASALKQAIRII   D
Subjt:  MSVVPRRRSSSTRIHVMALDGIVNVNSLFTFAVFLGITWYPTADPAVNLLPDGDDGPCAPAAAAAQSLIACHVYSFSCFLFSSLVASALKQAIRIIGRDD

Query:  GEHGVAYAPALRMGMVASAVGSVLGCGFLVAALLNLVQIKLGTLSCRRWETVAAAVPLVSLVPMALFIYIVLVLHAFTR
        G  G  +A ALR+GMVASAVGSVLGCGFLVAALLNLVQIKLG   CRRWETVAAAVPLVSLVP+ALFIYI LV+HAFTR
Subjt:  GEHGVAYAPALRMGMVASAVGSVLGCGFLVAALLNLVQIKLGTLSCRRWETVAAAVPLVSLVPMALFIYIVLVLHAFTR

A0A5D3BFZ3 Uncharacterized protein7.3e-7483.24Show/hide
Query:  MSVVPRRRSSSTRIHVMALDGIVNVNSLFTFAVFLGITWYPTADPAVNLLPDGDDGPCAPAAAAAQSLIACHVYSFSCFLFSSLVASALKQAIRIIGRDD
        MSVVPRRRS+STRIH++ALDGIVNVNSLFTFAVFLG+ WYPTA+PA NLLPD DDGPCA A + AQ+LIACHVYSFSCFLFSSL+ASALKQAIRII   D
Subjt:  MSVVPRRRSSSTRIHVMALDGIVNVNSLFTFAVFLGITWYPTADPAVNLLPDGDDGPCAPAAAAAQSLIACHVYSFSCFLFSSLVASALKQAIRIIGRDD

Query:  GEHGVAYAPALRMGMVASAVGSVLGCGFLVAALLNLVQIKLGTLSCRRWETVAAAVPLVSLVPMALFIYIVLVLHAFTR
        G  G  +A ALR+GMVASAVGSVLGCGFLVAALLNLVQIKLG   CRRWETVAAAVPLVSLVP+ALFIYI LV+HAFTR
Subjt:  GEHGVAYAPALRMGMVASAVGSVLGCGFLVAALLNLVQIKLGTLSCRRWETVAAAVPLVSLVPMALFIYIVLVLHAFTR

A0A6J1HPR3 uncharacterized protein LOC1114649282.5e-90100Show/hide
Query:  MSVVPRRRSSSTRIHVMALDGIVNVNSLFTFAVFLGITWYPTADPAVNLLPDGDDGPCAPAAAAAQSLIACHVYSFSCFLFSSLVASALKQAIRIIGRDD
        MSVVPRRRSSSTRIHVMALDGIVNVNSLFTFAVFLGITWYPTADPAVNLLPDGDDGPCAPAAAAAQSLIACHVYSFSCFLFSSLVASALKQAIRIIGRDD
Subjt:  MSVVPRRRSSSTRIHVMALDGIVNVNSLFTFAVFLGITWYPTADPAVNLLPDGDDGPCAPAAAAAQSLIACHVYSFSCFLFSSLVASALKQAIRIIGRDD

Query:  GEHGVAYAPALRMGMVASAVGSVLGCGFLVAALLNLVQIKLGTLSCRRWETVAAAVPLVSLVPMALFIYIVLVLHAFTR
        GEHGVAYAPALRMGMVASAVGSVLGCGFLVAALLNLVQIKLGTLSCRRWETVAAAVPLVSLVPMALFIYIVLVLHAFTR
Subjt:  GEHGVAYAPALRMGMVASAVGSVLGCGFLVAALLNLVQIKLGTLSCRRWETVAAAVPLVSLVPMALFIYIVLVLHAFTR

A0A6J1I4A7 uncharacterized protein LOC1114695085.0e-8392.74Show/hide
Query:  MSVVPRRRSSSTRIHVMALDGIVNVNSLFTFAVFLGITWYPTADPAVNLLPDGDDGPCAPAAAAAQSLIACHVYSFSCFLFSSLVASALKQAIRIIGRDD
        MSVVPRRRSSSTRIHVMALDGIVNVNSLFTFAVFLGITWYPTADP VNLLPD DDGPCAPAAAAAQSLIACHVYSFSCFLFSSLVASALKQAIRIIG +D
Subjt:  MSVVPRRRSSSTRIHVMALDGIVNVNSLFTFAVFLGITWYPTADPAVNLLPDGDDGPCAPAAAAAQSLIACHVYSFSCFLFSSLVASALKQAIRIIGRDD

Query:  GEHGVAYAPALRMGMVASAVGSVLGCGFLVAALLNLVQIKLGTLSCRRWETVAAAVPLVSLVPMALFIYIVLVLHAFTR
        G HG  +APALR+GMVASAVGSVLGCGFLVAALLNLVQIKLG   CRRWETVAA VPLVSLVPMALFIYIVLVLHAFTR
Subjt:  GEHGVAYAPALRMGMVASAVGSVLGCGFLVAALLNLVQIKLGTLSCRRWETVAAAVPLVSLVPMALFIYIVLVLHAFTR

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
AT2G01580.1 unknown protein2.9e-2238.51Show/hide
Query:  SSSTRIHVMALDGIVNVNSLFTFAVFLGITWYPTADPAVNLLPDGDDGPCAPAAAAAQSLIACHVYSFSCFLFSSLVASALKQAIRIIG---RDDGEHGV
        +S+T +HV ALDGIV+ NSLFT AVF+GI++   +D  +      D   C+      + L+   V SF+ FLFSSLVA  +K AI ++     D+     
Subjt:  SSSTRIHVMALDGIVNVNSLFTFAVFLGITWYPTADPAVNLLPDGDDGPCAPAAAAAQSLIACHVYSFSCFLFSSLVASALKQAIRIIG---RDDGEHGV

Query:  AYAPALRMGMVASAVGSVLGCGFLVAALLNLVQIKLGTLSCRRWETVAAAVPLVSLVPMALFIYIVLVLHAFTR
             LR G+V +A GS+LGC FL+ ++++++Q++LG LSC     +   + LV LV  AL +YI  V ++F +
Subjt:  AYAPALRMGMVASAVGSVLGCGFLVAALLNLVQIKLGTLSCRRWETVAAAVPLVSLVPMALFIYIVLVLHAFTR

AT3G07510.1 unknown protein2.5e-2646.2Show/hide
Query:  SSTRIHVMALDGIVNVNSLFTFAVFLGITWYPTADPAVNLLPDGDDGPCAPAAAAAQSLIACHVYSFSCFLFSSLVASALKQAIRII-GRDDGEHGVAY-
        ++T +HV ALDG+VNVNSLFT AVF+G++    A P  + L       C  +A  A+ L+   V SFS FLFSSLVA  LK A+ ++  +D  E   A+ 
Subjt:  SSTRIHVMALDGIVNVNSLFTFAVFLGITWYPTADPAVNLLPDGDDGPCAPAAAAAQSLIACHVYSFSCFLFSSLVASALKQAIRII-GRDDGEHGVAY-

Query:  -APALRMGMVASAVGSVLGCGFLVAALLNLVQIKLGTLSCRRWETVAAAVPLVSLVPMALFIYIVLVLHAF
            LR GM+ASAVGSV+GC FL+ +++N++QI+LG LSC       A   LV+LV  AL IYI   ++AF
Subjt:  -APALRMGMVASAVGSVLGCGFLVAALLNLVQIKLGTLSCRRWETVAAAVPLVSLVPMALFIYIVLVLHAF

AT3G07510.2 unknown protein2.5e-2646.2Show/hide
Query:  SSTRIHVMALDGIVNVNSLFTFAVFLGITWYPTADPAVNLLPDGDDGPCAPAAAAAQSLIACHVYSFSCFLFSSLVASALKQAIRII-GRDDGEHGVAY-
        ++T +HV ALDG+VNVNSLFT AVF+G++    A P  + L       C  +A  A+ L+   V SFS FLFSSLVA  LK A+ ++  +D  E   A+ 
Subjt:  SSTRIHVMALDGIVNVNSLFTFAVFLGITWYPTADPAVNLLPDGDDGPCAPAAAAAQSLIACHVYSFSCFLFSSLVASALKQAIRII-GRDDGEHGVAY-

Query:  -APALRMGMVASAVGSVLGCGFLVAALLNLVQIKLGTLSCRRWETVAAAVPLVSLVPMALFIYIVLVLHAF
            LR GM+ASAVGSV+GC FL+ +++N++QI+LG LSC       A   LV+LV  AL IYI   ++AF
Subjt:  -APALRMGMVASAVGSVLGCGFLVAALLNLVQIKLGTLSCRRWETVAAAVPLVSLVPMALFIYIVLVLHAF

AT3G46890.1 BEST Arabidopsis thaliana protein match is: maternal effect embryo arrest 60 (TAIR:AT5G05950.1)4.0e-3248.98Show/hide
Query:  RRRSSSTRIHVMALDGIVNVNSLFTFAVFLGIT-----WYPTADPAVNLLPDGDDGPC--APAAAAAQSLIACHVYSFSCFLFSSLVASALKQAI-----
        RR   +T IHV A+DGIVNVNSLF+ A+FLG+T      +P +  A     +     C  A   A A+ L++ HVYSFS FLFSSL+A +LKQAI     
Subjt:  RRRSSSTRIHVMALDGIVNVNSLFTFAVFLGIT-----WYPTADPAVNLLPDGDDGPC--APAAAAAQSLIACHVYSFSCFLFSSLVASALKQAI-----

Query:  -----------RIIGRDDGEHGVAYAPALRMGMVASAVGSVLGCGFLVAALLNLVQIKLGTLSCRR-WETVAAAVPLVSLVPMALFIYIVLVLHAF
                   R++   +G   +A   ALR+G+VAS V SVLGCGFL  AL++LVQIKLG L C+R +  +AA VPLV LVP AL IY+ LVL+AF
Subjt:  -----------RIIGRDDGEHGVAYAPALRMGMVASAVGSVLGCGFLVAALLNLVQIKLGTLSCRR-WETVAAAVPLVSLVPMALFIYIVLVLHAF

AT5G05950.1 maternal effect embryo arrest 604.0e-4056.74Show/hide
Query:  STRIHVMALDGIVNVNSLFTFAVFLGITWYPTADPAVNLLPDGDDGPCAPAAAAAQSLIACHVYSFSCFLFSSLVASALKQAIR--------IIGRDDGE
        +T IH+ ALDGIVNVNSLFT AVF+G+ W PT DP  +L+ D +   C P A  A++L+A HVYSF+ FLFSSL+A  LKQA+R        I  R D  
Subjt:  STRIHVMALDGIVNVNSLFTFAVFLGITWYPTADPAVNLLPDGDDGPCAPAAAAAQSLIACHVYSFSCFLFSSLVASALKQAIR--------IIGRDDGE

Query:  HGVAYAPALRMGMVASAVGSVLGCGFLVAALLNLVQIKLGTLSC-RRWETVAAAVPLVSLVPMALFIYIVLVLHAFTR
               ALR GMV S +GSV GCGFL+ AL+N+VQIKLGTL C     T AA VPLV LVP ALFIY+ L+L+AFTR
Subjt:  HGVAYAPALRMGMVASAVGSVLGCGFLVAALLNLVQIKLGTLSC-RRWETVAAAVPLVSLVPMALFIYIVLVLHAFTR


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGTCCGTCGTTCCACGGCGGCGATCCTCCTCGACCAGAATCCATGTCATGGCCCTCGACGGCATCGTCAACGTCAACTCCCTCTTCACCTTCGCCGTCTTCCTC
GGCATCACCTGGTACCCCACTGCTGACCCCGCCGTCAACCTACTTCCCGACGGTGACGACGGCCCCTGTGCCCCAGCCGCCGCTGCCGCTCAGAGCCTCATCGCC
TGCCATGTGTACTCCTTCAGCTGCTTCCTCTTCTCCAGCCTAGTCGCCTCGGCGCTAAAGCAGGCTATTAGAATCATCGGCCGCGACGATGGAGAGCATGGTGTA
GCCTACGCGCCGGCGTTACGCATGGGGATGGTGGCGTCGGCAGTCGGGTCGGTGCTCGGATGTGGGTTTTTGGTGGCGGCGCTGCTGAATTTGGTACAGATAAAG
TTAGGGACTTTAAGTTGCCGACGGTGGGAAACGGTGGCGGCCGCCGTGCCGTTGGTGAGTTTGGTTCCTATGGCGCTTTTCATTTACATCGTTCTTGTTCTTCAC
GCCTTCACGCGCTAG
mRNA sequenceShow/hide mRNA sequence
ATGTCCGTCGTTCCACGGCGGCGATCCTCCTCGACCAGAATCCATGTCATGGCCCTCGACGGCATCGTCAACGTCAACTCCCTCTTCACCTTCGCCGTCTTCCTC
GGCATCACCTGGTACCCCACTGCTGACCCCGCCGTCAACCTACTTCCCGACGGTGACGACGGCCCCTGTGCCCCAGCCGCCGCTGCCGCTCAGAGCCTCATCGCC
TGCCATGTGTACTCCTTCAGCTGCTTCCTCTTCTCCAGCCTAGTCGCCTCGGCGCTAAAGCAGGCTATTAGAATCATCGGCCGCGACGATGGAGAGCATGGTGTA
GCCTACGCGCCGGCGTTACGCATGGGGATGGTGGCGTCGGCAGTCGGGTCGGTGCTCGGATGTGGGTTTTTGGTGGCGGCGCTGCTGAATTTGGTACAGATAAAG
TTAGGGACTTTAAGTTGCCGACGGTGGGAAACGGTGGCGGCCGCCGTGCCGTTGGTGAGTTTGGTTCCTATGGCGCTTTTCATTTACATCGTTCTTGTTCTTCAC
GCCTTCACGCGCTAG
Protein sequenceShow/hide protein sequence
MSVVPRRRSSSTRIHVMALDGIVNVNSLFTFAVFLGITWYPTADPAVNLLPDGDDGPCAPAAAAAQSLIACHVYSFSCFLFSSLVASALKQAIRIIGRDDGEHGV
AYAPALRMGMVASAVGSVLGCGFLVAALLNLVQIKLGTLSCRRWETVAAAVPLVSLVPMALFIYIVLVLHAFTR