; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

CmoCh13G001800 (gene) of Cucurbita moschata (Rifu) v1 genome

Gene IDCmoCh13G001800
OrganismCucurbita moschata Rifu (Cucurbita moschata (Rifu) v1)
Descriptionhistone H4
Genome locationCmo_Chr13:1215541..1217521
RNA-Seq ExpressionCmoCh13G001800
SyntenyCmoCh13G001800
Gene Ontology termsGO:0006352 - DNA-templated transcription, initiation (biological process)
GO:0000786 - nucleosome (cellular component)
GO:0005654 - nucleoplasm (cellular component)
GO:0003677 - DNA binding (molecular function)
GO:0046982 - protein heterodimerization activity (molecular function)
InterPro domainsIPR001951 - Histone H4
IPR009072 - Histone-fold
IPR019809 - Histone H4, conserved site
IPR035425 - CENP-T/Histone H4, histone fold


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAF5778016.1 putative histone H4, histone-fold, CENP-T/Histone H4, histone [Helianthus annuus]4.4e-5080.56Show/hide
Query:  FPFKFYNACPLLKLSLLSLPMDLSFFSVDLNPHLPILSTATMSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVL
        FP K  N    L+  L   P  L  F   +N       TATMSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVL
Subjt:  FPFKFYNACPLLKLSLLSLPMDLSFFSVDLNPHLPILSTATMSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVL

Query:  KIFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLYGFGG
        KIFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLYGFGG
Subjt:  KIFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLYGFGG

KAG0536402.1 hypothetical protein BDA96_03G060600 [Sorghum bicolor]3.4e-5096.36Show/hide
Query:  PILSTATMSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKIFLENVIRDAVTYTEHARRKTVTAMDVVYALKR
        P++S A MSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKIFLENVIRDAVTYTEHARRKTVTAMDVVYALKR
Subjt:  PILSTATMSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKIFLENVIRDAVTYTEHARRKTVTAMDVVYALKR

Query:  QGRTLYGFGG
        QGRTLYGFGG
Subjt:  QGRTLYGFGG

KFO33707.1 Histone H4 [Fukomys damarensis]5.8e-5092.24Show/hide
Query:  DLNPHLPILSTATMSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKIFLENVIRDAVTYTEHARRKTVTAMDV
        +L PH  I+S A MSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLK+FLENVIRDAVTYTEHA+RKTVTAMDV
Subjt:  DLNPHLPILSTATMSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKIFLENVIRDAVTYTEHARRKTVTAMDV

Query:  VYALKRQGRTLYGFGG
        VYALKRQGRTLYGFGG
Subjt:  VYALKRQGRTLYGFGG

XP_010829397.1 PREDICTED: histone H4-like [Bison bison bison]5.8e-5095.41Show/hide
Query:  ILSTATMSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKIFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQ
        +++TATMSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLK+FLENVIRDAVTYTEHA+RKTVTAMDVVYALKRQ
Subjt:  ILSTATMSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKIFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQ

Query:  GRTLYGFGG
        GRTLYGFGG
Subjt:  GRTLYGFGG

XP_033617846.1 histone H4-like [Fukomys damarensis]5.8e-5092.24Show/hide
Query:  DLNPHLPILSTATMSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKIFLENVIRDAVTYTEHARRKTVTAMDV
        +L PH  I+S A MSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLK+FLENVIRDAVTYTEHA+RKTVTAMDV
Subjt:  DLNPHLPILSTATMSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKIFLENVIRDAVTYTEHARRKTVTAMDV

Query:  VYALKRQGRTLYGFGG
        VYALKRQGRTLYGFGG
Subjt:  VYALKRQGRTLYGFGG

TrEMBL top hitse value%identityAlignment
A0A091DRM4 Histone H42.8e-5092.24Show/hide
Query:  DLNPHLPILSTATMSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKIFLENVIRDAVTYTEHARRKTVTAMDV
        +L PH  I+S A MSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLK+FLENVIRDAVTYTEHA+RKTVTAMDV
Subjt:  DLNPHLPILSTATMSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKIFLENVIRDAVTYTEHARRKTVTAMDV

Query:  VYALKRQGRTLYGFGG
        VYALKRQGRTLYGFGG
Subjt:  VYALKRQGRTLYGFGG

A0A251T2S4 Histone H42.1e-5080.56Show/hide
Query:  FPFKFYNACPLLKLSLLSLPMDLSFFSVDLNPHLPILSTATMSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVL
        FP K  N    L+  L   P  L  F   +N       TATMSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVL
Subjt:  FPFKFYNACPLLKLSLLSLPMDLSFFSVDLNPHLPILSTATMSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVL

Query:  KIFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLYGFGG
        KIFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLYGFGG
Subjt:  KIFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLYGFGG

A0A287M501 Histone H42.1e-5092.24Show/hide
Query:  NPHL--PILSTATMSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKIFLENVIRDAVTYTEHARRKTVTAMDV
        NP +  P+   A MSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKIFLENVIRDAVTYTEHARRKTVTAMDV
Subjt:  NPHL--PILSTATMSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKIFLENVIRDAVTYTEHARRKTVTAMDV

Query:  VYALKRQGRTLYGFGG
        VYALKRQGRTLYGFGG
Subjt:  VYALKRQGRTLYGFGG

A0A453CQ06 Histone H42.8e-5093.1Show/hide
Query:  NPHLPIL--STATMSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKIFLENVIRDAVTYTEHARRKTVTAMDV
        +PH  +L  + ATMSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKIFLENVIRDAVTYTEHARRKTVTAMDV
Subjt:  NPHLPIL--STATMSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKIFLENVIRDAVTYTEHARRKTVTAMDV

Query:  VYALKRQGRTLYGFGG
        VYALKRQGRTLYGFGG
Subjt:  VYALKRQGRTLYGFGG

A0A6P3GRU7 Histone H42.8e-5095.41Show/hide
Query:  ILSTATMSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKIFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQ
        +++TATMSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLK+FLENVIRDAVTYTEHA+RKTVTAMDVVYALKRQ
Subjt:  ILSTATMSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKIFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQ

Query:  GRTLYGFGG
        GRTLYGFGG
Subjt:  GRTLYGFGG

SwissProt top hitse value%identityAlignment
P59259 Histone H45.4e-51100Show/hide
Query:  MSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKIFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLYG
        MSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKIFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLYG
Subjt:  MSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKIFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLYG

Query:  FGG
        FGG
Subjt:  FGG

P62785 Histone H4 variant TH0115.4e-51100Show/hide
Query:  MSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKIFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLYG
        MSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKIFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLYG
Subjt:  MSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKIFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLYG

Query:  FGG
        FGG
Subjt:  FGG

Q6LAF3 Histone H45.4e-51100Show/hide
Query:  MSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKIFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLYG
        MSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKIFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLYG
Subjt:  MSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKIFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLYG

Query:  FGG
        FGG
Subjt:  FGG

Q6PMI5 Histone H45.4e-51100Show/hide
Query:  MSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKIFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLYG
        MSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKIFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLYG
Subjt:  MSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKIFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLYG

Query:  FGG
        FGG
Subjt:  FGG

Q6WZ83 Histone H45.4e-51100Show/hide
Query:  MSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKIFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLYG
        MSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKIFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLYG
Subjt:  MSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKIFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLYG

Query:  FGG
        FGG
Subjt:  FGG

Arabidopsis top hitse value%identityAlignment
AT1G07660.1 Histone superfamily protein3.9e-52100Show/hide
Query:  MSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKIFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLYG
        MSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKIFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLYG
Subjt:  MSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKIFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLYG

Query:  FGG
        FGG
Subjt:  FGG

AT1G07820.1 Histone superfamily protein3.9e-52100Show/hide
Query:  MSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKIFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLYG
        MSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKIFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLYG
Subjt:  MSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKIFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLYG

Query:  FGG
        FGG
Subjt:  FGG

AT1G07820.2 Histone superfamily protein3.9e-52100Show/hide
Query:  MSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKIFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLYG
        MSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKIFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLYG
Subjt:  MSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKIFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLYG

Query:  FGG
        FGG
Subjt:  FGG

AT2G28740.1 histone H43.9e-52100Show/hide
Query:  MSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKIFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLYG
        MSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKIFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLYG
Subjt:  MSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKIFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLYG

Query:  FGG
        FGG
Subjt:  FGG

AT3G45930.1 Histone superfamily protein3.9e-52100Show/hide
Query:  MSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKIFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLYG
        MSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKIFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLYG
Subjt:  MSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKIFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLYG

Query:  FGG
        FGG
Subjt:  FGG


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGTCCAAGTATGGGGTTCATGGTTTTCCCTTTAAGTTCTACAATGCATGCCCGTTACTCAAACTATCCCTTCTTTCATTGCCGATGGACCTGAGTTTTTTCTCT
GTAGATTTGAATCCTCATCTCCCAATCTTAAGCACAGCGACAATGTCCGGCAGAGGCAAGGGAGGAAAGGGCCTTGGAAAAGGAGGAGCAAAGAGGCATCGGAAG
GTTTTGAGAGATAACATTCAAGGAATCACGAAGCCGGCAATTCGGCGTCTGGCCAGGCGAGGCGGCGTAAAGCGTATCAGCGGCCTGATCTACGAGGAGACTCGC
GGCGTTCTCAAGATCTTCCTCGAGAATGTCATTCGCGATGCTGTCACCTACACCGAGCACGCTCGCCGGAAGACCGTCACCGCCATGGATGTTGTGTATGCTCTC
AAGAGGCAAGGTCGCACTCTTTACGGCTTTGGAGGTTAG
mRNA sequenceShow/hide mRNA sequence
ATGTCCAAGTATGGGGTTCATGGTTTTCCCTTTAAGTTCTACAATGCATGCCCGTTACTCAAACTATCCCTTCTTTCATTGCCGATGGACCTGAGTTTTTTCTCT
GTAGATTTGAATCCTCATCTCCCAATCTTAAGCACAGCGACAATGTCCGGCAGAGGCAAGGGAGGAAAGGGCCTTGGAAAAGGAGGAGCAAAGAGGCATCGGAAG
GTTTTGAGAGATAACATTCAAGGAATCACGAAGCCGGCAATTCGGCGTCTGGCCAGGCGAGGCGGCGTAAAGCGTATCAGCGGCCTGATCTACGAGGAGACTCGC
GGCGTTCTCAAGATCTTCCTCGAGAATGTCATTCGCGATGCTGTCACCTACACCGAGCACGCTCGCCGGAAGACCGTCACCGCCATGGATGTTGTGTATGCTCTC
AAGAGGCAAGGTCGCACTCTTTACGGCTTTGGAGGTTAG
Protein sequenceShow/hide protein sequence
MSKYGVHGFPFKFYNACPLLKLSLLSLPMDLSFFSVDLNPHLPILSTATMSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETR
GVLKIFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLYGFGG