CuGenDBv2

Gene ID	CmoCh13G001970
Organism	Cucurbita moschata Rifu (Cucurbita moschata (Rifu) v1)
Description	DNA-directed RNA polymerase subunit
Genome location	Cmo_Chr13:1452798..1457910
RNA-Seq Expression	CmoCh13G001970
Synteny	CmoCh13G001970
Gene Ontology terms	GO:0006351 - transcription, DNA-templated (biological process) GO:0005666 - RNA polymerase III complex (cellular component) GO:0003677 - DNA binding (molecular function) GO:0003899 - DNA-directed 5'-3' RNA polymerase activity (molecular function) GO:0046872 - metal ion binding (molecular function)
InterPro domains	IPR044893 - RNA polymerase Rpb1, clamp domain superfamily

Homology

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GenBank top hits

e value

%identity

Alignment

KAG6583479.1 DNA-directed RNA polymerase III subunit 1, partial [Cucurbita argyrosperma subsp. sororia]

2.1e-12

83.33

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Query:  KSMQFSTFSRYEISKMAEVRVYKGLYYDTTRKPIDSGLLDPRMIPMDR
        KSMQFSTFS  EISKMAEV+VYKGLYYDTTRKPID GLLDPRM P ++
Subjt:  KSMQFSTFSRYEISKMAEVRVYKGLYYDTTRKPIDSGLLDPRMIPMDR

XP_022964790.1 DNA-directed RNA polymerase III subunit 1 [Cucurbita moschata]

2.1e-12

83.33

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Query:  KSMQFSTFSRYEISKMAEVRVYKGLYYDTTRKPIDSGLLDPRMIPMDR
        KSMQFSTFS  EISKMAEV+VYKGLYYDTTRKPID GLLDPRM P ++
Subjt:  KSMQFSTFSRYEISKMAEVRVYKGLYYDTTRKPIDSGLLDPRMIPMDR

XP_022970436.1 DNA-directed RNA polymerase III subunit 1 [Cucurbita maxima]

2.1e-12

83.33

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Query:  KSMQFSTFSRYEISKMAEVRVYKGLYYDTTRKPIDSGLLDPRMIPMDR
        KSMQFSTFS  EISKMAEV+VYKGLYYDTTRKPID GLLDPRM P ++
Subjt:  KSMQFSTFSRYEISKMAEVRVYKGLYYDTTRKPIDSGLLDPRMIPMDR

XP_023519826.1 DNA-directed RNA polymerase III subunit 1 [Cucurbita pepo subsp. pepo]

2.1e-12

83.33

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Query:  KSMQFSTFSRYEISKMAEVRVYKGLYYDTTRKPIDSGLLDPRMIPMDR
        KSMQFSTFS  EISKMAEV+VYKGLYYDTTRKPID GLLDPRM P ++
Subjt:  KSMQFSTFSRYEISKMAEVRVYKGLYYDTTRKPIDSGLLDPRMIPMDR

XP_038894318.1 DNA-directed RNA polymerase III subunit 1 isoform X1 [Benincasa hispida]

4.6e-12

81.25

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Query:  KSMQFSTFSRYEISKMAEVRVYKGLYYDTTRKPIDSGLLDPRMIPMDR
        KSMQF+TFS  EISKMAEV+VYKGLYYDTTRKPID GLLDPRM P ++
Subjt:  KSMQFSTFSRYEISKMAEVRVYKGLYYDTTRKPIDSGLLDPRMIPMDR

TrEMBL top hits

e value

%identity

Alignment

A0A0A0LSG9 DNA-directed RNA polymerase

5.0e-12

79.17

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Query:  KSMQFSTFSRYEISKMAEVRVYKGLYYDTTRKPIDSGLLDPRMIPMDR
        KSMQF+TFS  EISK+AEV+VYKGLYYDTTRKPID GLLDPRM P ++
Subjt:  KSMQFSTFSRYEISKMAEVRVYKGLYYDTTRKPIDSGLLDPRMIPMDR

A0A1S3CNX9 DNA-directed RNA polymerase subunit

5.0e-12

79.17

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Query:  KSMQFSTFSRYEISKMAEVRVYKGLYYDTTRKPIDSGLLDPRMIPMDR
        KSMQF+TFS  EISK+AEV+VYKGLYYDTTRKPID GLLDPRM P ++
Subjt:  KSMQFSTFSRYEISKMAEVRVYKGLYYDTTRKPIDSGLLDPRMIPMDR

A0A5A7T5U3 DNA-directed RNA polymerase III subunit 1

1.9e-11

86.05

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Query:  KSMQFSTFSRYEISKMAEVRVYKGLYYDTTRKPIDSGLLDPRM
        KSMQF+TFS  EISK+AEV+VYKGLYYDTTRKPID GLLDPRM
Subjt:  KSMQFSTFSRYEISKMAEVRVYKGLYYDTTRKPIDSGLLDPRM

A0A6J1HLT9 DNA-directed RNA polymerase subunit

1.0e-12

83.33

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Query:  KSMQFSTFSRYEISKMAEVRVYKGLYYDTTRKPIDSGLLDPRMIPMDR
        KSMQFSTFS  EISKMAEV+VYKGLYYDTTRKPID GLLDPRM P ++
Subjt:  KSMQFSTFSRYEISKMAEVRVYKGLYYDTTRKPIDSGLLDPRMIPMDR

A0A6J1I0L0 DNA-directed RNA polymerase subunit

1.0e-12

83.33

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Query:  KSMQFSTFSRYEISKMAEVRVYKGLYYDTTRKPIDSGLLDPRMIPMDR
        KSMQFSTFS  EISKMAEV+VYKGLYYDTTRKPID GLLDPRM P ++
Subjt:  KSMQFSTFSRYEISKMAEVRVYKGLYYDTTRKPIDSGLLDPRMIPMDR

SwissProt top hits

e value

%identity

Alignment

F4JXF9 DNA-directed RNA polymerase III subunit 1

2.8e-04

47.92

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Query:  KSMQFSTFSRYEISKMAEVRVYKGLYYDTTRKPIDSGLLDPRMIPMDR
        KS+ FS  S  E+ K AEV+V+    YD + KP ++GLLDPRM P ++
Subjt:  KSMQFSTFSRYEISKMAEVRVYKGLYYDTTRKPIDSGLLDPRMIPMDR

Arabidopsis top hits

e value

%identity

Alignment

AT5G60040.1 nuclear RNA polymerase C1

2.0e-05

47.92

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Query:  KSMQFSTFSRYEISKMAEVRVYKGLYYDTTRKPIDSGLLDPRMIPMDR
        KS+ FS  S  E+ K AEV+V+    YD + KP ++GLLDPRM P ++
Subjt:  KSMQFSTFSRYEISKMAEVRVYKGLYYDTTRKPIDSGLLDPRMIPMDR

AT5G60040.2 nuclear RNA polymerase C1

2.0e-05

47.92

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Query:  KSMQFSTFSRYEISKMAEVRVYKGLYYDTTRKPIDSGLLDPRMIPMDR
        KS+ FS  S  E+ K AEV+V+    YD + KP ++GLLDPRM P ++
Subjt:  KSMQFSTFSRYEISKMAEVRVYKGLYYDTTRKPIDSGLLDPRMIPMDR

Sequences

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CDS sequence

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ATGGAGAAATTTGAAAATCCAATTAACCATAGTAACACGGTTAAAATTCTTGTACACAAGAGCATGCAGTTCAGTACATTCTCTAGATATGAAATTAGCAAAATG
GCTGAAGTTCGGGTGTATAAGGGCTTGTATTATGATACCACTAGAAAACCGATCGACAGCGGCTTACTGGATCCTCGAATGATACCAATGGACAGATTAGTTGAG
GAGCCTAAGATAAGTTATATAACTATACTCTCAGAATCCAAGGTAGGATGA

mRNA sequence

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Protein sequence

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MEKFENPINHSNTVKILVHKSMQFSTFSRYEISKMAEVRVYKGLYYDTTRKPIDSGLLDPRMIPMDRLVEEPKISYITILSESKVG

CmoCh13G001970 (gene) of Cucurbita moschata (Rifu) v1 genome