CuGenDBv2

Gene ID	CmoCh13G001990
Organism	Cucurbita moschata Rifu (Cucurbita moschata (Rifu) v1)
Description	psbP domain-containing protein 6, chloroplastic
Genome location	Cmo_Chr13:1534891..1535717
RNA-Seq Expression	CmoCh13G001990
Synteny	CmoCh13G001990
Gene Ontology terms	GO:0015979 - photosynthesis (biological process) GO:0009535 - chloroplast thylakoid membrane (cellular component) GO:0009654 - photosystem II oxygen evolving complex (cellular component) GO:0019898 - extrinsic component of membrane (cellular component) GO:0005509 - calcium ion binding (molecular function)
InterPro domains	IPR016123 - Mog1/PsbP, alpha/beta/alpha sandwich

Homology

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GenBank top hits

e value

%identity

Alignment

KAG6583508.1 PsbP domain-containing protein 6, chloroplastic, partial [Cucurbita argyrosperma subsp. sororia]

6.9e-53

95.37

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Query:  IYHSGNVQPYQFLLPPTWKQVRVANILSGNYCQPKCAEPWVEVKFEDDKQGKIQVVASPLVRLTNKPNATIEDIGSPDRVIASLGPFVTRNTFDPEELVE
        I   GNVQPYQFLLPPTWKQVRVANILSGNYCQPKCAEPWVEVKFEDDKQGKIQVVASPLVRLTNKPNATIEDIGSPD+VIASLGPFVTRNTFDPEELVE
Subjt:  IYHSGNVQPYQFLLPPTWKQVRVANILSGNYCQPKCAEPWVEVKFEDDKQGKIQVVASPLVRLTNKPNATIEDIGSPDRVIASLGPFVTRNTFDPEELVE

Query:  SSVEKFGD
        SSVEK GD
Subjt:  SSVEKFGD

XP_022948517.1 psbP domain-containing protein 6, chloroplastic [Cucurbita moschata]

4.2e-50

90.48

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Query:  SGNVQPYQFLLPPTWKQVRVANILSGNYCQPKCAEPWVEVKFEDDKQGKIQVVASPLVRLTNKPNATIEDIGSPDRVIASLGPFVTRNTFDPEELVESSV
        +GNVQPYQF+LPPTWKQ RVANILSGNYCQPKCAEPWVEVKFEDDKQGKIQVVASPL+RLTNKPNATIEDIGSP++VIASLGPFVT NT+DPEEL+ESSV
Subjt:  SGNVQPYQFLLPPTWKQVRVANILSGNYCQPKCAEPWVEVKFEDDKQGKIQVVASPLVRLTNKPNATIEDIGSPDRVIASLGPFVTRNTFDPEELVESSV

Query:  EKFGD
        EK GD
Subjt:  EKFGD

XP_022998891.1 psbP domain-containing protein 6, chloroplastic [Cucurbita maxima]

4.2e-50

90.48

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Query:  SGNVQPYQFLLPPTWKQVRVANILSGNYCQPKCAEPWVEVKFEDDKQGKIQVVASPLVRLTNKPNATIEDIGSPDRVIASLGPFVTRNTFDPEELVESSV
        +GNVQPYQF+LPPTWKQ RVANILSGNYCQPKCAEPWVEVKFEDDKQGKIQVVASPL+RLTNKPNATIEDIGSP++VIASLGPFVT NT+DPEEL+ESSV
Subjt:  SGNVQPYQFLLPPTWKQVRVANILSGNYCQPKCAEPWVEVKFEDDKQGKIQVVASPLVRLTNKPNATIEDIGSPDRVIASLGPFVTRNTFDPEELVESSV

Query:  EKFGD
        EK GD
Subjt:  EKFGD

XP_023521520.1 psbP domain-containing protein 6, chloroplastic-like [Cucurbita pepo subsp. pepo]

4.2e-50

90.48

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Query:  SGNVQPYQFLLPPTWKQVRVANILSGNYCQPKCAEPWVEVKFEDDKQGKIQVVASPLVRLTNKPNATIEDIGSPDRVIASLGPFVTRNTFDPEELVESSV
        +GNVQPYQF+LPPTWKQ RVANILSGNYCQPKCAEPWVEVKFEDDKQGKIQVVASPL+RLTNKPNATIEDIGSP++VIASLGPFVT NT+DPEEL+ESSV
Subjt:  SGNVQPYQFLLPPTWKQVRVANILSGNYCQPKCAEPWVEVKFEDDKQGKIQVVASPLVRLTNKPNATIEDIGSPDRVIASLGPFVTRNTFDPEELVESSV

Query:  EKFGD
        EK GD
Subjt:  EKFGD

XP_023524584.1 psbP domain-containing protein 6, chloroplastic-like [Cucurbita pepo subsp. pepo]

4.2e-50

90.48

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Query:  SGNVQPYQFLLPPTWKQVRVANILSGNYCQPKCAEPWVEVKFEDDKQGKIQVVASPLVRLTNKPNATIEDIGSPDRVIASLGPFVTRNTFDPEELVESSV
        +GNVQPYQF+LPPTWKQ RVANILSGNYCQPKCAEPWVEVKFEDDKQGKIQVVASPL+RLTNKPNATIEDIGSP++VIASLGPFVT NT+DPEEL+ESSV
Subjt:  SGNVQPYQFLLPPTWKQVRVANILSGNYCQPKCAEPWVEVKFEDDKQGKIQVVASPLVRLTNKPNATIEDIGSPDRVIASLGPFVTRNTFDPEELVESSV

Query:  EKFGD
        EK GD
Subjt:  EKFGD

TrEMBL top hits

e value

%identity

Alignment

A0A0A0LVB3 PsbP domain-containing protein

1.0e-49

88.57

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Query:  SGNVQPYQFLLPPTWKQVRVANILSGNYCQPKCAEPWVEVKFEDDKQGKIQVVASPLVRLTNKPNATIEDIGSPDRVIASLGPFVTRNTFDPEELVESSV
        +GNVQPYQF+LPPTWKQ RVANILSGNYCQPKCAEPWVEVKFEDDKQGKIQ+VASPL+RLTNKPNATIEDIGSP++VIASLGPFVT +T+DPEEL+ESSV
Subjt:  SGNVQPYQFLLPPTWKQVRVANILSGNYCQPKCAEPWVEVKFEDDKQGKIQVVASPLVRLTNKPNATIEDIGSPDRVIASLGPFVTRNTFDPEELVESSV

Query:  EKFGD
        EK GD
Subjt:  EKFGD

A0A1J7HRX1 PsbP domain-containing protein

1.0e-49

86.67

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Query:  SGNVQPYQFLLPPTWKQVRVANILSGNYCQPKCAEPWVEVKFEDDKQGKIQVVASPLVRLTNKPNATIEDIGSPDRVIASLGPFVTRNTFDPEELVESSV
        +GNVQPYQF+LPPTWKQ+R+ANILSGNYCQPKCAEPWVEVKFED+KQGK+Q+VASPL+RLTNKPNATIEDIGSP+RVIASLGPFVT NT+DPEEL+E+SV
Subjt:  SGNVQPYQFLLPPTWKQVRVANILSGNYCQPKCAEPWVEVKFEDDKQGKIQVVASPLVRLTNKPNATIEDIGSPDRVIASLGPFVTRNTFDPEELVESSV

Query:  EKFGD
        EK GD
Subjt:  EKFGD

A0A6J1DG13 psbP domain-containing protein 6, chloroplastic

1.3e-49

88.57

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Query:  SGNVQPYQFLLPPTWKQVRVANILSGNYCQPKCAEPWVEVKFEDDKQGKIQVVASPLVRLTNKPNATIEDIGSPDRVIASLGPFVTRNTFDPEELVESSV
        +GNVQPYQF+LPPTWKQ RVANILSGNYCQPKCAEPWVEVKFEDDKQGKIQVVASPL+RLTNKPNATIEDIGSP++VIASLGPFVT N++DPEEL+E+SV
Subjt:  SGNVQPYQFLLPPTWKQVRVANILSGNYCQPKCAEPWVEVKFEDDKQGKIQVVASPLVRLTNKPNATIEDIGSPDRVIASLGPFVTRNTFDPEELVESSV

Query:  EKFGD
        EK GD
Subjt:  EKFGD

A0A6J1G9G7 psbP domain-containing protein 6, chloroplastic

2.0e-50

90.48

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Query:  SGNVQPYQFLLPPTWKQVRVANILSGNYCQPKCAEPWVEVKFEDDKQGKIQVVASPLVRLTNKPNATIEDIGSPDRVIASLGPFVTRNTFDPEELVESSV
        +GNVQPYQF+LPPTWKQ RVANILSGNYCQPKCAEPWVEVKFEDDKQGKIQVVASPL+RLTNKPNATIEDIGSP++VIASLGPFVT NT+DPEEL+ESSV
Subjt:  SGNVQPYQFLLPPTWKQVRVANILSGNYCQPKCAEPWVEVKFEDDKQGKIQVVASPLVRLTNKPNATIEDIGSPDRVIASLGPFVTRNTFDPEELVESSV

Query:  EKFGD
        EK GD
Subjt:  EKFGD

A0A6J1KBG9 psbP domain-containing protein 6, chloroplastic

2.0e-50

90.48

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Query:  SGNVQPYQFLLPPTWKQVRVANILSGNYCQPKCAEPWVEVKFEDDKQGKIQVVASPLVRLTNKPNATIEDIGSPDRVIASLGPFVTRNTFDPEELVESSV
        +GNVQPYQF+LPPTWKQ RVANILSGNYCQPKCAEPWVEVKFEDDKQGKIQVVASPL+RLTNKPNATIEDIGSP++VIASLGPFVT NT+DPEEL+ESSV
Subjt:  SGNVQPYQFLLPPTWKQVRVANILSGNYCQPKCAEPWVEVKFEDDKQGKIQVVASPLVRLTNKPNATIEDIGSPDRVIASLGPFVTRNTFDPEELVESSV

Query:  EKFGD
        EK GD
Subjt:  EKFGD

SwissProt top hits

e value

%identity

Alignment

Q9LXX5 PsbP domain-containing protein 6, chloroplastic

1.2e-47

77.14

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Query:  SGNVQPYQFLLPPTWKQVRVANILSGNYCQPKCAEPWVEVKFEDDKQGKIQVVASPLVRLTNKPNATIEDIGSPDRVIASLGPFVTRNTFDPEELVESSV
        +GNVQPYQF+LPP WKQ+R+ANILSGNYCQPKCAEPW+EVKFE++KQGK+QVVASPL+RLTNKPNATIED+G P++VIASLGPFVT N++D +EL+++S+
Subjt:  SGNVQPYQFLLPPTWKQVRVANILSGNYCQPKCAEPWVEVKFEDDKQGKIQVVASPLVRLTNKPNATIEDIGSPDRVIASLGPFVTRNTFDPEELVESSV

Query:  EKFGD
        EK GD
Subjt:  EKFGD

Arabidopsis top hits

e value

%identity

Alignment

AT3G56650.1 Mog1/PsbP/DUF1795-like photosystem II reaction center PsbP family protein

8.5e-49

77.14

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Query:  SGNVQPYQFLLPPTWKQVRVANILSGNYCQPKCAEPWVEVKFEDDKQGKIQVVASPLVRLTNKPNATIEDIGSPDRVIASLGPFVTRNTFDPEELVESSV
        +GNVQPYQF+LPP WKQ+R+ANILSGNYCQPKCAEPW+EVKFE++KQGK+QVVASPL+RLTNKPNATIED+G P++VIASLGPFVT N++D +EL+++S+
Subjt:  SGNVQPYQFLLPPTWKQVRVANILSGNYCQPKCAEPWVEVKFEDDKQGKIQVVASPLVRLTNKPNATIEDIGSPDRVIASLGPFVTRNTFDPEELVESSV

Query:  EKFGD
        EK GD
Subjt:  EKFGD

Sequences

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CDS sequence

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ATGCAAGTCATCTACCATAGTGGAAATGTGCAACCATACCAGTTCCTTCTGCCTCCAACTTGGAAACAAGTGCGTGTAGCTAACATTTTATCTGGTAATTACTGTCAACC
CAAGTGTGCAGAGCCTTGGGTGGAGGTGAAATTTGAAGATGACAAGCAAGGCAAAATCCAGGTAGTGGCTTCCCCTTTGGTACGTCTCACTAATAAACCCAATGCCACGA
TTGAAGACATAGGTAGCCCTGACAGGGTTATTGCTTCTCTTGGCCCTTTTGTTACTAGAAATACGTTCGATCCTGAAGAACTCGTTGAATCATCAGTTGAGAAATTCGGT
GATTAA

mRNA sequence

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Protein sequence

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MQVIYHSGNVQPYQFLLPPTWKQVRVANILSGNYCQPKCAEPWVEVKFEDDKQGKIQVVASPLVRLTNKPNATIEDIGSPDRVIASLGPFVTRNTFDPEELVESSVEKFG
D

CmoCh13G001990 (gene) of Cucurbita moschata (Rifu) v1 genome