CuGenDBv2

Gene ID	CmoCh13G002000
Organism	Cucurbita moschata Rifu (Cucurbita moschata (Rifu) v1)
Description	psbP domain-containing protein 6, chloroplastic
Genome location	Cmo_Chr13:1548780..1550780
RNA-Seq Expression	CmoCh13G002000
Synteny	CmoCh13G002000
Gene Ontology terms	GO:0015979 - photosynthesis (biological process) GO:0009507 - chloroplast (cellular component) GO:0009654 - photosystem II oxygen evolving complex (cellular component) GO:0019898 - extrinsic component of membrane (cellular component) GO:0005509 - calcium ion binding (molecular function)
InterPro domains	IPR002683 - PsbP, C-terminal IPR016123 - Mog1/PsbP, alpha/beta/alpha sandwich

Homology

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GenBank top hits

e value

%identity

Alignment

KAG6583508.1 PsbP domain-containing protein 6, chloroplastic, partial [Cucurbita argyrosperma subsp. sororia]

1.4e-36

100

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Query:  GNVQPYQFLLPPTWKQVRVANILSGNYCQPKCAEPWVEVKFEDDKQGKIQVVASPLVRLTNKPNATIEDIGSPDK
        GNVQPYQFLLPPTWKQVRVANILSGNYCQPKCAEPWVEVKFEDDKQGKIQVVASPLVRLTNKPNATIEDIGSPDK
Subjt:  GNVQPYQFLLPPTWKQVRVANILSGNYCQPKCAEPWVEVKFEDDKQGKIQVVASPLVRLTNKPNATIEDIGSPDK

XP_004493332.1 psbP domain-containing protein 6, chloroplastic [Cicer arietinum]

2.4e-36

86.05

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Query:  SKSQNTDHLAYGNVQPYQFLLPPTWKQVRVANILSGNYCQPKCAEPWVEVKFEDDKQGKIQVVASPLVRLTNKPNATIEDIGSPDK
        + S++T  L  GNVQPYQFLLPPTWKQ RVANILSGNYCQPKCAEPWVEVKFED+KQGKIQVVASPL+RLTNKPNATIEDIGSP+K
Subjt:  SKSQNTDHLAYGNVQPYQFLLPPTWKQVRVANILSGNYCQPKCAEPWVEVKFEDDKQGKIQVVASPLVRLTNKPNATIEDIGSPDK

XP_022948517.1 psbP domain-containing protein 6, chloroplastic [Cucurbita moschata]

5.4e-36

87.95

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Query:  QNTDHLAYGNVQPYQFLLPPTWKQVRVANILSGNYCQPKCAEPWVEVKFEDDKQGKIQVVASPLVRLTNKPNATIEDIGSPDK
        ++T  L  GNVQPYQF+LPPTWKQ RVANILSGNYCQPKCAEPWVEVKFEDDKQGKIQVVASPL+RLTNKPNATIEDIGSP+K
Subjt:  QNTDHLAYGNVQPYQFLLPPTWKQVRVANILSGNYCQPKCAEPWVEVKFEDDKQGKIQVVASPLVRLTNKPNATIEDIGSPDK

XP_022998891.1 psbP domain-containing protein 6, chloroplastic [Cucurbita maxima]

5.4e-36

87.95

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Query:  QNTDHLAYGNVQPYQFLLPPTWKQVRVANILSGNYCQPKCAEPWVEVKFEDDKQGKIQVVASPLVRLTNKPNATIEDIGSPDK
        ++T  L  GNVQPYQF+LPPTWKQ RVANILSGNYCQPKCAEPWVEVKFEDDKQGKIQVVASPL+RLTNKPNATIEDIGSP+K
Subjt:  QNTDHLAYGNVQPYQFLLPPTWKQVRVANILSGNYCQPKCAEPWVEVKFEDDKQGKIQVVASPLVRLTNKPNATIEDIGSPDK

XP_023524584.1 psbP domain-containing protein 6, chloroplastic-like [Cucurbita pepo subsp. pepo]

5.4e-36

87.95

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Query:  QNTDHLAYGNVQPYQFLLPPTWKQVRVANILSGNYCQPKCAEPWVEVKFEDDKQGKIQVVASPLVRLTNKPNATIEDIGSPDK
        ++T  L  GNVQPYQF+LPPTWKQ RVANILSGNYCQPKCAEPWVEVKFEDDKQGKIQVVASPL+RLTNKPNATIEDIGSP+K
Subjt:  QNTDHLAYGNVQPYQFLLPPTWKQVRVANILSGNYCQPKCAEPWVEVKFEDDKQGKIQVVASPLVRLTNKPNATIEDIGSPDK

TrEMBL top hits

e value

%identity

Alignment

A0A0A0LVB3 PsbP domain-containing protein

3.4e-36

83.72

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Query:  SKSQNTDHLAYGNVQPYQFLLPPTWKQVRVANILSGNYCQPKCAEPWVEVKFEDDKQGKIQVVASPLVRLTNKPNATIEDIGSPDK
        +   +T  L  GNVQPYQF+LPPTWKQ RVANILSGNYCQPKCAEPWVEVKFEDDKQGKIQ+VASPL+RLTNKPNATIEDIGSP+K
Subjt:  SKSQNTDHLAYGNVQPYQFLLPPTWKQVRVANILSGNYCQPKCAEPWVEVKFEDDKQGKIQVVASPLVRLTNKPNATIEDIGSPDK

A0A1S2XTE7 psbP domain-containing protein 6, chloroplastic

1.2e-36

86.05

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Query:  SKSQNTDHLAYGNVQPYQFLLPPTWKQVRVANILSGNYCQPKCAEPWVEVKFEDDKQGKIQVVASPLVRLTNKPNATIEDIGSPDK
        + S++T  L  GNVQPYQFLLPPTWKQ RVANILSGNYCQPKCAEPWVEVKFED+KQGKIQVVASPL+RLTNKPNATIEDIGSP+K
Subjt:  SKSQNTDHLAYGNVQPYQFLLPPTWKQVRVANILSGNYCQPKCAEPWVEVKFEDDKQGKIQVVASPLVRLTNKPNATIEDIGSPDK

A0A5A7U7M4 PsbP domain-containing protein 6

3.4e-36

89.02

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Query:  NTDHLAYGNVQPYQFLLPPTWKQVRVANILSGNYCQPKCAEPWVEVKFEDDKQGKIQVVASPLVRLTNKPNATIEDIGSPDK
        +T  L  GNVQPYQF+LPPTWKQ RVANILSGNYCQPKCAEPWVEVKFEDDKQGKIQVVASPL+RLTNKPNATIEDIGSP+K
Subjt:  NTDHLAYGNVQPYQFLLPPTWKQVRVANILSGNYCQPKCAEPWVEVKFEDDKQGKIQVVASPLVRLTNKPNATIEDIGSPDK

A0A6J1G9G7 psbP domain-containing protein 6, chloroplastic

2.6e-36

87.95

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Query:  QNTDHLAYGNVQPYQFLLPPTWKQVRVANILSGNYCQPKCAEPWVEVKFEDDKQGKIQVVASPLVRLTNKPNATIEDIGSPDK
        ++T  L  GNVQPYQF+LPPTWKQ RVANILSGNYCQPKCAEPWVEVKFEDDKQGKIQVVASPL+RLTNKPNATIEDIGSP+K
Subjt:  QNTDHLAYGNVQPYQFLLPPTWKQVRVANILSGNYCQPKCAEPWVEVKFEDDKQGKIQVVASPLVRLTNKPNATIEDIGSPDK

A0A6J1KBG9 psbP domain-containing protein 6, chloroplastic

2.6e-36

87.95

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Query:  QNTDHLAYGNVQPYQFLLPPTWKQVRVANILSGNYCQPKCAEPWVEVKFEDDKQGKIQVVASPLVRLTNKPNATIEDIGSPDK
        ++T  L  GNVQPYQF+LPPTWKQ RVANILSGNYCQPKCAEPWVEVKFEDDKQGKIQVVASPL+RLTNKPNATIEDIGSP+K
Subjt:  QNTDHLAYGNVQPYQFLLPPTWKQVRVANILSGNYCQPKCAEPWVEVKFEDDKQGKIQVVASPLVRLTNKPNATIEDIGSPDK

SwissProt top hits

e value

%identity

Alignment

Q9LXX5 PsbP domain-containing protein 6, chloroplastic

1.1e-36

76.74

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Query:  SKSQNTDHLAYGNVQPYQFLLPPTWKQVRVANILSGNYCQPKCAEPWVEVKFEDDKQGKIQVVASPLVRLTNKPNATIEDIGSPDK
        +K  +T  L  GNVQPYQF+LPP WKQ+R+ANILSGNYCQPKCAEPW+EVKFE++KQGK+QVVASPL+RLTNKPNATIED+G P+K
Subjt:  SKSQNTDHLAYGNVQPYQFLLPPTWKQVRVANILSGNYCQPKCAEPWVEVKFEDDKQGKIQVVASPLVRLTNKPNATIEDIGSPDK

Arabidopsis top hits

e value

%identity

Alignment

AT3G56650.1 Mog1/PsbP/DUF1795-like photosystem II reaction center PsbP family protein

8.1e-38

76.74

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Query:  SKSQNTDHLAYGNVQPYQFLLPPTWKQVRVANILSGNYCQPKCAEPWVEVKFEDDKQGKIQVVASPLVRLTNKPNATIEDIGSPDK
        +K  +T  L  GNVQPYQF+LPP WKQ+R+ANILSGNYCQPKCAEPW+EVKFE++KQGK+QVVASPL+RLTNKPNATIED+G P+K
Subjt:  SKSQNTDHLAYGNVQPYQFLLPPTWKQVRVANILSGNYCQPKCAEPWVEVKFEDDKQGKIQVVASPLVRLTNKPNATIEDIGSPDK

Sequences

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CDS sequence

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ATGAGCAAATCTCAAAACACAGACCATCTAGCATACGGAAATGTGCAACCATACCAGTTCCTTCTGCCTCCAACTTGGAAACAAGTGCGTGTAGCTAACATTTTATCTGG
TAATTACTGTCAACCCAAGTGTGCAGAGCCTTGGGTGGAGGTGAAATTTGAAGATGACAAGCAAGGCAAAATCCAGGTAGTGGCTTCCCCTTTGGTACGTCTCACTAATA
AACCCAATGCCACGATTGAAGACATAGGTAGCCCTGACAAGACATCTGAGAAAGTTTTGAGAACCATGCTTGATTCTCTTCAGCTCTAG

mRNA sequence

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Protein sequence

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MSKSQNTDHLAYGNVQPYQFLLPPTWKQVRVANILSGNYCQPKCAEPWVEVKFEDDKQGKIQVVASPLVRLTNKPNATIEDIGSPDKTSEKVLRTMLDSLQL

CmoCh13G002000 (gene) of Cucurbita moschata (Rifu) v1 genome