CuGenDBv2

Gene ID	CmoCh13G002010
Organism	Cucurbita moschata Rifu (Cucurbita moschata (Rifu) v1)
Description	psbP domain-containing protein 6, chloroplastic
Genome location	Cmo_Chr13:1560121..1562081
RNA-Seq Expression	CmoCh13G002010
Synteny	CmoCh13G002010
Gene Ontology terms	GO:0009523 - photosystem II (cellular component)
InterPro domains	IPR016123 - Mog1/PsbP, alpha/beta/alpha sandwich

Homology

Show/hide homology

GenBank top hits

e value

%identity

Alignment

XP_022948517.1 psbP domain-containing protein 6, chloroplastic [Cucurbita moschata]

5.0e-56

71.18

Show/hide

Query:  QNTDHLAYGNVQPYQFLLPPTWKQVRVANILSGNYCQPKCAEPWVE------------VVASPLVRLTNKPNATIEDIGSPDKVI--LGPFVTGNTFDPE
        ++T  L  GNVQPYQF+LPPTWKQ RVANILSGNYCQPKCAEPWVE            VVASPL+RLTNKPNATIEDIGSP+KVI  LGPFVTGNT+DPE
Subjt:  QNTDHLAYGNVQPYQFLLPPTWKQVRVANILSGNYCQPKCAEPWVE------------VVASPLVRLTNKPNATIEDIGSPDKVI--LGPFVTGNTFDPE

Query:  ELVESSVEKLGDHT--------------------ATAKGSTVVLFVASANDKQWQTSQKVLRTMLDSFQL
        EL+ESSVEKLGD T                    ATAKGSTVVLFVASANDKQWQ S+KVLRTMLDSFQL
Subjt:  ELVESSVEKLGDHT--------------------ATAKGSTVVLFVASANDKQWQTSQKVLRTMLDSFQL

XP_022998891.1 psbP domain-containing protein 6, chloroplastic [Cucurbita maxima]

5.0e-56

71.18

Show/hide

Query:  QNTDHLAYGNVQPYQFLLPPTWKQVRVANILSGNYCQPKCAEPWVE------------VVASPLVRLTNKPNATIEDIGSPDKVI--LGPFVTGNTFDPE
        ++T  L  GNVQPYQF+LPPTWKQ RVANILSGNYCQPKCAEPWVE            VVASPL+RLTNKPNATIEDIGSP+KVI  LGPFVTGNT+DPE
Subjt:  QNTDHLAYGNVQPYQFLLPPTWKQVRVANILSGNYCQPKCAEPWVE------------VVASPLVRLTNKPNATIEDIGSPDKVI--LGPFVTGNTFDPE

Query:  ELVESSVEKLGDHT--------------------ATAKGSTVVLFVASANDKQWQTSQKVLRTMLDSFQL
        EL+ESSVEKLGD T                    ATAKGSTVVLFVASANDKQWQ S+KVLRTMLDSFQL
Subjt:  ELVESSVEKLGDHT--------------------ATAKGSTVVLFVASANDKQWQTSQKVLRTMLDSFQL

XP_023521520.1 psbP domain-containing protein 6, chloroplastic-like [Cucurbita pepo subsp. pepo]

5.0e-56

71.18

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Query:  QNTDHLAYGNVQPYQFLLPPTWKQVRVANILSGNYCQPKCAEPWVE------------VVASPLVRLTNKPNATIEDIGSPDKVI--LGPFVTGNTFDPE
        ++T  L  GNVQPYQF+LPPTWKQ RVANILSGNYCQPKCAEPWVE            VVASPL+RLTNKPNATIEDIGSP+KVI  LGPFVTGNT+DPE
Subjt:  QNTDHLAYGNVQPYQFLLPPTWKQVRVANILSGNYCQPKCAEPWVE------------VVASPLVRLTNKPNATIEDIGSPDKVI--LGPFVTGNTFDPE

Query:  ELVESSVEKLGDHT--------------------ATAKGSTVVLFVASANDKQWQTSQKVLRTMLDSFQL
        EL+ESSVEKLGD T                    ATAKGSTVVLFVASANDKQWQ S+KVLRTMLDSFQL
Subjt:  ELVESSVEKLGDHT--------------------ATAKGSTVVLFVASANDKQWQTSQKVLRTMLDSFQL

XP_023524584.1 psbP domain-containing protein 6, chloroplastic-like [Cucurbita pepo subsp. pepo]

5.0e-56

71.18

Show/hide

Query:  QNTDHLAYGNVQPYQFLLPPTWKQVRVANILSGNYCQPKCAEPWVE------------VVASPLVRLTNKPNATIEDIGSPDKVI--LGPFVTGNTFDPE
        ++T  L  GNVQPYQF+LPPTWKQ RVANILSGNYCQPKCAEPWVE            VVASPL+RLTNKPNATIEDIGSP+KVI  LGPFVTGNT+DPE
Subjt:  QNTDHLAYGNVQPYQFLLPPTWKQVRVANILSGNYCQPKCAEPWVE------------VVASPLVRLTNKPNATIEDIGSPDKVI--LGPFVTGNTFDPE

Query:  ELVESSVEKLGDHT--------------------ATAKGSTVVLFVASANDKQWQTSQKVLRTMLDSFQL
        EL+ESSVEKLGD T                    ATAKGSTVVLFVASANDKQWQ S+KVLRTMLDSFQL
Subjt:  ELVESSVEKLGDHT--------------------ATAKGSTVVLFVASANDKQWQTSQKVLRTMLDSFQL

XP_038895408.1 psbP domain-containing protein 6, chloroplastic [Benincasa hispida]

1.9e-55

71.01

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Query:  NTDHLAYGNVQPYQFLLPPTWKQVRVANILSGNYCQPKCAEPWVE------------VVASPLVRLTNKPNATIEDIGSPDKVI--LGPFVTGNTFDPEE
        +T  L  GNVQPYQF+LPPTWKQ RVANILSGNYCQPKCAEPWVE            VVASPL+RLTNKPNATIEDIGSP+KVI  LGPFVTG+T+DPEE
Subjt:  NTDHLAYGNVQPYQFLLPPTWKQVRVANILSGNYCQPKCAEPWVE------------VVASPLVRLTNKPNATIEDIGSPDKVI--LGPFVTGNTFDPEE

Query:  LVESSVEKLGDHT--------------------ATAKGSTVVLFVASANDKQWQTSQKVLRTMLDSFQL
        L+ESSVEKLGD T                    ATAKGSTVVLFVASANDKQWQ+S+KVLRTMLDSFQL
Subjt:  LVESSVEKLGDHT--------------------ATAKGSTVVLFVASANDKQWQTSQKVLRTMLDSFQL

TrEMBL top hits

e value

%identity

Alignment

A0A0A0LVB3 PsbP domain-containing protein

3.5e-55

68.79

Show/hide

Query:  SKSQNTDHLAYGNVQPYQFLLPPTWKQVRVANILSGNYCQPKCAEPWVEV------------VASPLVRLTNKPNATIEDIGSPDKVI--LGPFVTGNTF
        +   +T  L  GNVQPYQF+LPPTWKQ RVANILSGNYCQPKCAEPWVEV            VASPL+RLTNKPNATIEDIGSP+KVI  LGPFVTG+T+
Subjt:  SKSQNTDHLAYGNVQPYQFLLPPTWKQVRVANILSGNYCQPKCAEPWVEV------------VASPLVRLTNKPNATIEDIGSPDKVI--LGPFVTGNTF

Query:  DPEELVESSVEKLGDHT--------------------ATAKGSTVVLFVASANDKQWQTSQKVLRTMLDSFQL
        DPEEL+ESSVEKLGD T                    ATAKGSTVVLFVASANDKQWQ S+KVLRTMLDSF L
Subjt:  DPEELVESSVEKLGDHT--------------------ATAKGSTVVLFVASANDKQWQTSQKVLRTMLDSFQL

A0A1S3CJG7 psbP domain-containing protein 6, chloroplastic

7.7e-55

69.82

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Query:  NTDHLAYGNVQPYQFLLPPTWKQVRVANILSGNYCQPKCAEPWVE------------VVASPLVRLTNKPNATIEDIGSPDKVI--LGPFVTGNTFDPEE
        +T  L  GNVQPYQF+LPPTWKQ RVANILSGNYCQPKCAEPWVE            VVASPL+RLTNKPNATIEDIGSP+KVI  LGPFVTG+T+DP+E
Subjt:  NTDHLAYGNVQPYQFLLPPTWKQVRVANILSGNYCQPKCAEPWVE------------VVASPLVRLTNKPNATIEDIGSPDKVI--LGPFVTGNTFDPEE

Query:  LVESSVEKLGDHT--------------------ATAKGSTVVLFVASANDKQWQTSQKVLRTMLDSFQL
        L+ESSVEKLGD T                    ATAKGSTVVLFVASANDKQWQ S+KVLRTMLDSF+L
Subjt:  LVESSVEKLGDHT--------------------ATAKGSTVVLFVASANDKQWQTSQKVLRTMLDSFQL

A0A5A7U7M4 PsbP domain-containing protein 6

7.7e-55

69.82

Show/hide

Query:  NTDHLAYGNVQPYQFLLPPTWKQVRVANILSGNYCQPKCAEPWVE------------VVASPLVRLTNKPNATIEDIGSPDKVI--LGPFVTGNTFDPEE
        +T  L  GNVQPYQF+LPPTWKQ RVANILSGNYCQPKCAEPWVE            VVASPL+RLTNKPNATIEDIGSP+KVI  LGPFVTG+T+DP+E
Subjt:  NTDHLAYGNVQPYQFLLPPTWKQVRVANILSGNYCQPKCAEPWVE------------VVASPLVRLTNKPNATIEDIGSPDKVI--LGPFVTGNTFDPEE

Query:  LVESSVEKLGDHT--------------------ATAKGSTVVLFVASANDKQWQTSQKVLRTMLDSFQL
        L+ESSVEKLGD T                    ATAKGSTVVLFVASANDKQWQ S+KVLRTMLDSF+L
Subjt:  LVESSVEKLGDHT--------------------ATAKGSTVVLFVASANDKQWQTSQKVLRTMLDSFQL

A0A6J1G9G7 psbP domain-containing protein 6, chloroplastic

2.4e-56

71.18

Show/hide

Query:  QNTDHLAYGNVQPYQFLLPPTWKQVRVANILSGNYCQPKCAEPWVE------------VVASPLVRLTNKPNATIEDIGSPDKVI--LGPFVTGNTFDPE
        ++T  L  GNVQPYQF+LPPTWKQ RVANILSGNYCQPKCAEPWVE            VVASPL+RLTNKPNATIEDIGSP+KVI  LGPFVTGNT+DPE
Subjt:  QNTDHLAYGNVQPYQFLLPPTWKQVRVANILSGNYCQPKCAEPWVE------------VVASPLVRLTNKPNATIEDIGSPDKVI--LGPFVTGNTFDPE

Query:  ELVESSVEKLGDHT--------------------ATAKGSTVVLFVASANDKQWQTSQKVLRTMLDSFQL
        EL+ESSVEKLGD T                    ATAKGSTVVLFVASANDKQWQ S+KVLRTMLDSFQL
Subjt:  ELVESSVEKLGDHT--------------------ATAKGSTVVLFVASANDKQWQTSQKVLRTMLDSFQL

A0A6J1KBG9 psbP domain-containing protein 6, chloroplastic

2.4e-56

71.18

Show/hide

Query:  QNTDHLAYGNVQPYQFLLPPTWKQVRVANILSGNYCQPKCAEPWVE------------VVASPLVRLTNKPNATIEDIGSPDKVI--LGPFVTGNTFDPE
        ++T  L  GNVQPYQF+LPPTWKQ RVANILSGNYCQPKCAEPWVE            VVASPL+RLTNKPNATIEDIGSP+KVI  LGPFVTGNT+DPE
Subjt:  QNTDHLAYGNVQPYQFLLPPTWKQVRVANILSGNYCQPKCAEPWVE------------VVASPLVRLTNKPNATIEDIGSPDKVI--LGPFVTGNTFDPE

Query:  ELVESSVEKLGDHT--------------------ATAKGSTVVLFVASANDKQWQTSQKVLRTMLDSFQL
        EL+ESSVEKLGD T                    ATAKGSTVVLFVASANDKQWQ S+KVLRTMLDSFQL
Subjt:  ELVESSVEKLGDHT--------------------ATAKGSTVVLFVASANDKQWQTSQKVLRTMLDSFQL

SwissProt top hits

e value

%identity

Alignment

Q9LXX5 PsbP domain-containing protein 6, chloroplastic

1.0e-51

60.12

Show/hide

Query:  SKSQNTDHLAYGNVQPYQFLLPPTWKQVRVANILSGNYCQPKCAEPWVE------------VVASPLVRLTNKPNATIEDIGSPDKVI--LGPFVTGNTF
        +K  +T  L  GNVQPYQF+LPP WKQ+R+ANILSGNYCQPKCAEPW+E            VVASPL+RLTNKPNATIED+G P+KVI  LGPFVTGN++
Subjt:  SKSQNTDHLAYGNVQPYQFLLPPTWKQVRVANILSGNYCQPKCAEPWVE------------VVASPLVRLTNKPNATIEDIGSPDKVI--LGPFVTGNTF

Query:  DPEELVESSVEKLGDHT--------------------ATAKGSTVVLFVASANDKQWQTSQKVLRTMLDSFQL
        D +EL+++S+EK+GD T                    ATAKGSTVVLFV SA +KQWQ+SQK L  +LDSFQL
Subjt:  DPEELVESSVEKLGDHT--------------------ATAKGSTVVLFVASANDKQWQTSQKVLRTMLDSFQL

Arabidopsis top hits

e value

%identity

Alignment

AT3G56650.1 Mog1/PsbP/DUF1795-like photosystem II reaction center PsbP family protein

7.1e-53

60.12

Show/hide

Query:  SKSQNTDHLAYGNVQPYQFLLPPTWKQVRVANILSGNYCQPKCAEPWVE------------VVASPLVRLTNKPNATIEDIGSPDKVI--LGPFVTGNTF
        +K  +T  L  GNVQPYQF+LPP WKQ+R+ANILSGNYCQPKCAEPW+E            VVASPL+RLTNKPNATIED+G P+KVI  LGPFVTGN++
Subjt:  SKSQNTDHLAYGNVQPYQFLLPPTWKQVRVANILSGNYCQPKCAEPWVE------------VVASPLVRLTNKPNATIEDIGSPDKVI--LGPFVTGNTF

Query:  DPEELVESSVEKLGDHT--------------------ATAKGSTVVLFVASANDKQWQTSQKVLRTMLDSFQL
        D +EL+++S+EK+GD T                    ATAKGSTVVLFV SA +KQWQ+SQK L  +LDSFQL
Subjt:  DPEELVESSVEKLGDHT--------------------ATAKGSTVVLFVASANDKQWQTSQKVLRTMLDSFQL

Sequences

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CDS sequence

Show/hide CDS sequence

ATGAGCAAATCTCAAAACACAGACCATCTAGCATATGGAAATGTGCAACCATACCAGTTCCTTCTGCCTCCAACTTGGAAACAAGTGCGTGTAGCTAACATTTTATCTGG
TAATTACTGTCAACCCAAGTGTGCAGAGCCTTGGGTGGAGGTAGTGGCTTCCCCTTTGGTACGTCTCACTAATAAACCCAATGCCACGATTGAAGACATAGGTAGCCCTG
ACAAGGTTATTCTTGGCCCTTTTGTTACTGGGAATACATTCGATCCCGAAGAACTCGTTGAATCATCAGTTGAGAAACTCGGTGATCATACGGCAACGGCTAAAGGAAGC
ACGGTTGTGTTATTTGTGGCTAGTGCCAATGATAAACAATGGCAGACATCTCAGAAAGTTTTGAGAACCATGCTTGATTCTTTTCAGCTCTAG

mRNA sequence

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Protein sequence

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MSKSQNTDHLAYGNVQPYQFLLPPTWKQVRVANILSGNYCQPKCAEPWVEVVASPLVRLTNKPNATIEDIGSPDKVILGPFVTGNTFDPEELVESSVEKLGDHTATAKGS
TVVLFVASANDKQWQTSQKVLRTMLDSFQL

CmoCh13G002010 (gene) of Cucurbita moschata (Rifu) v1 genome