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CmoCh13G002020 (gene) of Cucurbita moschata (Rifu) v1 genome

Gene IDCmoCh13G002020
OrganismCucurbita moschata Rifu (Cucurbita moschata (Rifu) v1)
Descriptiontetraspanin-3-like
Genome locationCmo_Chr13:1562819..1563181
RNA-Seq ExpressionCmoCh13G002020
SyntenyCmoCh13G002020
Gene Ontology termsGO:0009734 - auxin-activated signaling pathway (biological process)
GO:0055085 - transmembrane transport (biological process)
GO:0009506 - plasmodesma (cellular component)
GO:0016021 - integral component of membrane (cellular component)
GO:0022857 - transmembrane transporter activity (molecular function)
InterPro domainsIPR044991 - Tetraspani, plant


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG6583509.1 Tetraspanin-3, partial [Cucurbita argyrosperma subsp. sororia]1.8e-6298.28Show/hide
Query:  LKSGCCKPPTVCGYVYVNETVWDVGGGLVGPEPDCARWSNDQHQLCYACDSCKAGVLASIKKSWRKVSVINIVVLIILVISYVVGYAAFRNNRRMDNDEP
        ++SGCCKPPTVCGYVYVNETVWDVGGGLVGPEPDCARWSNDQHQLCYACDSCKAGVLASIKKSWRKVSVINIVVLIILVISYVVGYAAFRNNRRMDNDEP
Subjt:  LKSGCCKPPTVCGYVYVNETVWDVGGGLVGPEPDCARWSNDQHQLCYACDSCKAGVLASIKKSWRKVSVINIVVLIILVISYVVGYAAFRNNRRMDNDEP

Query:  AGSARMTKYKPRWFNI
        AGSARMTKYKPRWFNI
Subjt:  AGSARMTKYKPRWFNI

KAG7019258.1 Tetraspanin-3, partial [Cucurbita argyrosperma subsp. argyrosperma]1.8e-6298.28Show/hide
Query:  LKSGCCKPPTVCGYVYVNETVWDVGGGLVGPEPDCARWSNDQHQLCYACDSCKAGVLASIKKSWRKVSVINIVVLIILVISYVVGYAAFRNNRRMDNDEP
        ++SGCCKPPTVCGYVYVNETVWDVGGGLVGPEPDCARWSNDQHQLCYACDSCKAGVLASIKKSWRKVSVINIVVLIILVISYVVGYAAFRNNRRMDNDEP
Subjt:  LKSGCCKPPTVCGYVYVNETVWDVGGGLVGPEPDCARWSNDQHQLCYACDSCKAGVLASIKKSWRKVSVINIVVLIILVISYVVGYAAFRNNRRMDNDEP

Query:  AGSARMTKYKPRWFNI
        AGSARMTKYKPRWFNI
Subjt:  AGSARMTKYKPRWFNI

XP_022964814.1 tetraspanin-3-like [Cucurbita moschata]1.8e-6298.28Show/hide
Query:  LKSGCCKPPTVCGYVYVNETVWDVGGGLVGPEPDCARWSNDQHQLCYACDSCKAGVLASIKKSWRKVSVINIVVLIILVISYVVGYAAFRNNRRMDNDEP
        ++SGCCKPPTVCGYVYVNETVWDVGGGLVGPEPDCARWSNDQHQLCYACDSCKAGVLASIKKSWRKVSVINIVVLIILVISYVVGYAAFRNNRRMDNDEP
Subjt:  LKSGCCKPPTVCGYVYVNETVWDVGGGLVGPEPDCARWSNDQHQLCYACDSCKAGVLASIKKSWRKVSVINIVVLIILVISYVVGYAAFRNNRRMDNDEP

Query:  AGSARMTKYKPRWFNI
        AGSARMTKYKPRWFNI
Subjt:  AGSARMTKYKPRWFNI

XP_022970425.1 tetraspanin-3-like [Cucurbita maxima]3.0e-6297.41Show/hide
Query:  LKSGCCKPPTVCGYVYVNETVWDVGGGLVGPEPDCARWSNDQHQLCYACDSCKAGVLASIKKSWRKVSVINIVVLIILVISYVVGYAAFRNNRRMDNDEP
        ++SGCCKPPTVCGYVYVNETVWDVGGGLVGPEPDCARWSNDQHQLCYACDSCKAGVLAS+KKSWRKVSVINIVVLIILVISYVVGYAAFRNNRRMDNDEP
Subjt:  LKSGCCKPPTVCGYVYVNETVWDVGGGLVGPEPDCARWSNDQHQLCYACDSCKAGVLASIKKSWRKVSVINIVVLIILVISYVVGYAAFRNNRRMDNDEP

Query:  AGSARMTKYKPRWFNI
        AGSARMTKYKPRWFNI
Subjt:  AGSARMTKYKPRWFNI

XP_023520967.1 tetraspanin-3-like [Cucurbita pepo subsp. pepo]8.8e-6297.41Show/hide
Query:  LKSGCCKPPTVCGYVYVNETVWDVGGGLVGPEPDCARWSNDQHQLCYACDSCKAGVLASIKKSWRKVSVINIVVLIILVISYVVGYAAFRNNRRMDNDEP
        ++SGCCKPPTVCGYVYVNETVWDVGGGLVGPEPDCARWSNDQHQLCYACDSCKAGVLASIKKSWRKV VINIVVLIILVISYVVGYAAFRNNRRMDNDEP
Subjt:  LKSGCCKPPTVCGYVYVNETVWDVGGGLVGPEPDCARWSNDQHQLCYACDSCKAGVLASIKKSWRKVSVINIVVLIILVISYVVGYAAFRNNRRMDNDEP

Query:  AGSARMTKYKPRWFNI
        AGSARMTKYKPRWFNI
Subjt:  AGSARMTKYKPRWFNI

TrEMBL top hitse value%identityAlignment
A0A0A0LS61 Uncharacterized protein1.5e-5485.34Show/hide
Query:  LKSGCCKPPTVCGYVYVNETVWDVGGGLVGPEPDCARWSNDQHQLCYACDSCKAGVLASIKKSWRKVSVINIVVLIILVISYVVGYAAFRNNRRMDNDEP
        ++SGCCKPPTVCGYVYVNET+WD GGGLVG EPDC RWSNDQ QLCYACDSCKA VLAS+KKSWRKVSVINI+ LIILVISYV+GYAAFRNNRR+DNDEP
Subjt:  LKSGCCKPPTVCGYVYVNETVWDVGGGLVGPEPDCARWSNDQHQLCYACDSCKAGVLASIKKSWRKVSVINIVVLIILVISYVVGYAAFRNNRRMDNDEP

Query:  AGSARMTKYKPRWFNI
        A +ARMTK KP WFNI
Subjt:  AGSARMTKYKPRWFNI

A0A1S3CJB4 tetraspanin-3-like1.0e-5587.07Show/hide
Query:  LKSGCCKPPTVCGYVYVNETVWDVGGGLVGPEPDCARWSNDQHQLCYACDSCKAGVLASIKKSWRKVSVINIVVLIILVISYVVGYAAFRNNRRMDNDEP
        ++SGCCKPPTVCGYVYVNET+WD GGGLVG EPDC RWSNDQ QLCYACDSCKAGVLAS+KKSWRKVSVINI+VLIILVISYV+GYAAFRNNRR+DNDEP
Subjt:  LKSGCCKPPTVCGYVYVNETVWDVGGGLVGPEPDCARWSNDQHQLCYACDSCKAGVLASIKKSWRKVSVINIVVLIILVISYVVGYAAFRNNRRMDNDEP

Query:  AGSARMTKYKPRWFNI
        A +ARMTK KP WFNI
Subjt:  AGSARMTKYKPRWFNI

A0A6J1HPA5 tetraspanin-3-like8.6e-6398.28Show/hide
Query:  LKSGCCKPPTVCGYVYVNETVWDVGGGLVGPEPDCARWSNDQHQLCYACDSCKAGVLASIKKSWRKVSVINIVVLIILVISYVVGYAAFRNNRRMDNDEP
        ++SGCCKPPTVCGYVYVNETVWDVGGGLVGPEPDCARWSNDQHQLCYACDSCKAGVLASIKKSWRKVSVINIVVLIILVISYVVGYAAFRNNRRMDNDEP
Subjt:  LKSGCCKPPTVCGYVYVNETVWDVGGGLVGPEPDCARWSNDQHQLCYACDSCKAGVLASIKKSWRKVSVINIVVLIILVISYVVGYAAFRNNRRMDNDEP

Query:  AGSARMTKYKPRWFNI
        AGSARMTKYKPRWFNI
Subjt:  AGSARMTKYKPRWFNI

A0A6J1I2T9 tetraspanin-3-like1.5e-6297.41Show/hide
Query:  LKSGCCKPPTVCGYVYVNETVWDVGGGLVGPEPDCARWSNDQHQLCYACDSCKAGVLASIKKSWRKVSVINIVVLIILVISYVVGYAAFRNNRRMDNDEP
        ++SGCCKPPTVCGYVYVNETVWDVGGGLVGPEPDCARWSNDQHQLCYACDSCKAGVLAS+KKSWRKVSVINIVVLIILVISYVVGYAAFRNNRRMDNDEP
Subjt:  LKSGCCKPPTVCGYVYVNETVWDVGGGLVGPEPDCARWSNDQHQLCYACDSCKAGVLASIKKSWRKVSVINIVVLIILVISYVVGYAAFRNNRRMDNDEP

Query:  AGSARMTKYKPRWFNI
        AGSARMTKYKPRWFNI
Subjt:  AGSARMTKYKPRWFNI

A0A6J1KDR8 tetraspanin-3-like8.7e-5582.76Show/hide
Query:  LKSGCCKPPTVCGYVYVNETVWDVGGGLVGPEPDCARWSNDQHQLCYACDSCKAGVLASIKKSWRKVSVINIVVLIILVISYVVGYAAFRNNRRMDNDEP
        ++SGCCKPPTVCGYVYVNET WDVGGG+VG EPDC RWSNDQ QLCYACDSCKAGVLA++KKSWRKVSV+NI+VLI+LV+SYV+GYAAFRNNRR+DNDEP
Subjt:  LKSGCCKPPTVCGYVYVNETVWDVGGGLVGPEPDCARWSNDQHQLCYACDSCKAGVLASIKKSWRKVSVINIVVLIILVISYVVGYAAFRNNRRMDNDEP

Query:  AGSARMTKYKPRWFNI
        A +ARMTK KP WFN+
Subjt:  AGSARMTKYKPRWFNI

SwissProt top hitse value%identityAlignment
Q8S8Q6 Tetraspanin-85.3e-2546.85Show/hide
Query:  LKSGCCKPPTVCGYVYVNETVWDVGGGLVGPEPDCARWSNDQHQLCYACDSCKAGVLASIKKSWRKVSVINIVVLIILVISYVVGYAAFRNNRRMDNDEP
        L+SGCCKP   CG+ YVN T W          PDC  W N + +LC+ C SCKAG+L ++K +W+KV+++NIV L+ L+I Y VG  AFRNN+R D+   
Subjt:  LKSGCCKPPTVCGYVYVNETVWDVGGGLVGPEPDCARWSNDQHQLCYACDSCKAGVLASIKKSWRKVSVINIVVLIILVISYVVGYAAFRNNRRMDNDEP

Query:  AGSARMTKYKP
           +R   YKP
Subjt:  AGSARMTKYKP

Q9C7C1 Tetraspanin-61.3e-2345.61Show/hide
Query:  LKSGCCKPPTVCGYVYVNETVWDVGGGLVGPEPDCARWSNDQHQLCYACDSCKAGVLASIKKSWRKVSVINIVVLIILVISYVVGYAAFRNNRRMDND-E
        ++SGCCKPPT C Y            G+V    DC RW+N    LCY CD+CKAGVL  I+  WRK+SV+NI+VL++L+  Y  G  AF N R   +   
Subjt:  LKSGCCKPPTVCGYVYVNETVWDVGGGLVGPEPDCARWSNDQHQLCYACDSCKAGVLASIKKSWRKVSVINIVVLIILVISYVVGYAAFRNNRRMDND-E

Query:  PAGSARMTKYKPRW
        P+   RMT+ +PRW
Subjt:  PAGSARMTKYKPRW

Q9LSS4 Tetraspanin-41.8e-4171.96Show/hide
Query:  LKSGCCKPPTVCGYVYVNETVWDVGGGLVGPEPDCARWSNDQHQLCYACDSCKAGVLASIKKSWRKVSVINIVVLIILVISYVVGYAAFRNNRRMDNDEP
        ++SGCCKPPT CGY YVNETVW  GG +VGP PDC  W+NDQ  LCY C SCKAGVL S+KKSWRKVSVINIVV+IILVI YV+  AA++N +RM NDEP
Subjt:  LKSGCCKPPTVCGYVYVNETVWDVGGGLVGPEPDCARWSNDQHQLCYACDSCKAGVLASIKKSWRKVSVINIVVLIILVISYVVGYAAFRNNRRMDNDEP

Query:  AGSARMT
         G ARMT
Subjt:  AGSARMT

Q9M1E7 Tetraspanin-32.7e-4570.69Show/hide
Query:  LKSGCCKPPTVCGYVYVNETVWDVGGGLVGPEPDCARWSNDQHQLCYACDSCKAGVLASIKKSWRKVSVINIVVLIILVISYVVGYAAFRNNRRMDNDEP
        ++SGCCKPPT CG+ YVNET WD  GG++GP  DC  WSNDQ  LCY C SCKAGVL S+KKSWRKVSVINIVVLIILVI YV+ YAA+RN +R+DNDEP
Subjt:  LKSGCCKPPTVCGYVYVNETVWDVGGGLVGPEPDCARWSNDQHQLCYACDSCKAGVLASIKKSWRKVSVINIVVLIILVISYVVGYAAFRNNRRMDNDEP

Query:  AGSARMTKYKPRWFNI
        AG ARMTK  P  F++
Subjt:  AGSARMTKYKPRWFNI

Q9ZUN5 Tetraspanin-29.0e-2546.02Show/hide
Query:  LKSGCCKPPTVCGYVYVNETVWDVGGGLVGPEPDCARWSNDQHQLCYACDSCKAGVLASIKKSWRKVSVINIVVLIILVISYVVGYAAFRNNRRMDNDEP
        L+SGCCKPPT CGY +VN T+W +    +  + DC  WSNDQ QLCY C+SCKAG+L +++K WRK ++I I+ +++L+  YV+  +AFRN +  D    
Subjt:  LKSGCCKPPTVCGYVYVNETVWDVGGGLVGPEPDCARWSNDQHQLCYACDSCKAGVLASIKKSWRKVSVINIVVLIILVISYVVGYAAFRNNRRMDNDEP

Query:  AGSARMTKYKPRW
               KYK  W
Subjt:  AGSARMTKYKPRW

Arabidopsis top hitse value%identityAlignment
AT2G19580.1 tetraspanin26.4e-2646.02Show/hide
Query:  LKSGCCKPPTVCGYVYVNETVWDVGGGLVGPEPDCARWSNDQHQLCYACDSCKAGVLASIKKSWRKVSVINIVVLIILVISYVVGYAAFRNNRRMDNDEP
        L+SGCCKPPT CGY +VN T+W +    +  + DC  WSNDQ QLCY C+SCKAG+L +++K WRK ++I I+ +++L+  YV+  +AFRN +  D    
Subjt:  LKSGCCKPPTVCGYVYVNETVWDVGGGLVGPEPDCARWSNDQHQLCYACDSCKAGVLASIKKSWRKVSVINIVVLIILVISYVVGYAAFRNNRRMDNDEP

Query:  AGSARMTKYKPRW
               KYK  W
Subjt:  AGSARMTKYKPRW

AT2G23810.1 tetraspanin83.7e-2646.85Show/hide
Query:  LKSGCCKPPTVCGYVYVNETVWDVGGGLVGPEPDCARWSNDQHQLCYACDSCKAGVLASIKKSWRKVSVINIVVLIILVISYVVGYAAFRNNRRMDNDEP
        L+SGCCKP   CG+ YVN T W          PDC  W N + +LC+ C SCKAG+L ++K +W+KV+++NIV L+ L+I Y VG  AFRNN+R D+   
Subjt:  LKSGCCKPPTVCGYVYVNETVWDVGGGLVGPEPDCARWSNDQHQLCYACDSCKAGVLASIKKSWRKVSVINIVVLIILVISYVVGYAAFRNNRRMDNDEP

Query:  AGSARMTKYKP
           +R   YKP
Subjt:  AGSARMTKYKP

AT3G12090.1 tetraspanin69.2e-2545.61Show/hide
Query:  LKSGCCKPPTVCGYVYVNETVWDVGGGLVGPEPDCARWSNDQHQLCYACDSCKAGVLASIKKSWRKVSVINIVVLIILVISYVVGYAAFRNNRRMDND-E
        ++SGCCKPPT C Y            G+V    DC RW+N    LCY CD+CKAGVL  I+  WRK+SV+NI+VL++L+  Y  G  AF N R   +   
Subjt:  LKSGCCKPPTVCGYVYVNETVWDVGGGLVGPEPDCARWSNDQHQLCYACDSCKAGVLASIKKSWRKVSVINIVVLIILVISYVVGYAAFRNNRRMDND-E

Query:  PAGSARMTKYKPRW
        P+   RMT+ +PRW
Subjt:  PAGSARMTKYKPRW

AT3G45600.1 tetraspanin31.9e-4670.69Show/hide
Query:  LKSGCCKPPTVCGYVYVNETVWDVGGGLVGPEPDCARWSNDQHQLCYACDSCKAGVLASIKKSWRKVSVINIVVLIILVISYVVGYAAFRNNRRMDNDEP
        ++SGCCKPPT CG+ YVNET WD  GG++GP  DC  WSNDQ  LCY C SCKAGVL S+KKSWRKVSVINIVVLIILVI YV+ YAA+RN +R+DNDEP
Subjt:  LKSGCCKPPTVCGYVYVNETVWDVGGGLVGPEPDCARWSNDQHQLCYACDSCKAGVLASIKKSWRKVSVINIVVLIILVISYVVGYAAFRNNRRMDNDEP

Query:  AGSARMTKYKPRWFNI
        AG ARMTK  P  F++
Subjt:  AGSARMTKYKPRWFNI

AT5G60220.1 tetraspanin41.3e-4271.96Show/hide
Query:  LKSGCCKPPTVCGYVYVNETVWDVGGGLVGPEPDCARWSNDQHQLCYACDSCKAGVLASIKKSWRKVSVINIVVLIILVISYVVGYAAFRNNRRMDNDEP
        ++SGCCKPPT CGY YVNETVW  GG +VGP PDC  W+NDQ  LCY C SCKAGVL S+KKSWRKVSVINIVV+IILVI YV+  AA++N +RM NDEP
Subjt:  LKSGCCKPPTVCGYVYVNETVWDVGGGLVGPEPDCARWSNDQHQLCYACDSCKAGVLASIKKSWRKVSVINIVVLIILVISYVVGYAAFRNNRRMDNDEP

Query:  AGSARMT
         G ARMT
Subjt:  AGSARMT


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGTGTGTTTTTTGAAGTCTGGTTGCTGCAAGCCTCCCACAGTGTGTGGGTATGTCTATGTGAATGAGACAGTCTGGGATGTTGGGGGAGGGCTCGTGGGGCCTGAGCC
TGACTGTGCAAGGTGGAGCAATGACCAACACCAACTTTGCTATGCTTGTGACTCTTGCAAGGCTGGGGTTCTAGCCAGCATCAAGAAGAGCTGGAGAAAGGTCTCGGTCA
TTAACATCGTTGTCTTGATCATTCTCGTAATCTCTTACGTTGTTGGCTATGCAGCCTTTCGAAATAATCGTCGCATGGATAATGATGAACCTGCTGGTTCTGCCCGCATG
ACCAAATACAAACCACGTTGGTTTAATATTTGA
mRNA sequenceShow/hide mRNA sequence
ATGGTGTGTTTTTTGAAGTCTGGTTGCTGCAAGCCTCCCACAGTGTGTGGGTATGTCTATGTGAATGAGACAGTCTGGGATGTTGGGGGAGGGCTCGTGGGGCCTGAGCC
TGACTGTGCAAGGTGGAGCAATGACCAACACCAACTTTGCTATGCTTGTGACTCTTGCAAGGCTGGGGTTCTAGCCAGCATCAAGAAGAGCTGGAGAAAGGTCTCGGTCA
TTAACATCGTTGTCTTGATCATTCTCGTAATCTCTTACGTTGTTGGCTATGCAGCCTTTCGAAATAATCGTCGCATGGATAATGATGAACCTGCTGGTTCTGCCCGCATG
ACCAAATACAAACCACGTTGGTTTAATATTTGA
Protein sequenceShow/hide protein sequence
MVCFLKSGCCKPPTVCGYVYVNETVWDVGGGLVGPEPDCARWSNDQHQLCYACDSCKAGVLASIKKSWRKVSVINIVVLIILVISYVVGYAAFRNNRRMDNDEPAGSARM
TKYKPRWFNI