; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

CmoCh13G002260 (gene) of Cucurbita moschata (Rifu) v1 genome

Gene IDCmoCh13G002260
OrganismCucurbita moschata Rifu (Cucurbita moschata (Rifu) v1)
DescriptionCCHC-type domain-containing protein
Genome locationCmo_Chr13:1763237..1765306
RNA-Seq ExpressionCmoCh13G002260
SyntenyCmoCh13G002260
Gene Ontology termsGO:0000056 - ribosomal small subunit export from nucleus (biological process)
GO:0006807 - nitrogen compound metabolic process (biological process)
GO:0042274 - ribosomal small subunit biogenesis (biological process)
GO:0043170 - macromolecule metabolic process (biological process)
GO:0044238 - primary metabolic process (biological process)
GO:0005634 - nucleus (cellular component)
GO:0005829 - cytosol (cellular component)
GO:0030688 - preribosome, small subunit precursor (cellular component)
GO:0003676 - nucleic acid binding (molecular function)
GO:0003824 - catalytic activity (molecular function)
GO:0008270 - zinc ion binding (molecular function)
InterPro domainsIPR001878 - Zinc finger, CCHC-type
IPR025314 - Domain of unknown function DUF4219
IPR036875 - Zinc finger, CCHC-type superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_022940362.1 protein LTV1 homolog [Cucurbita moschata]2.3e-7877.25Show/hide
Query:  DENEVVELMIRLLMLRPQS--DPEIAALLDDDDLSRFGSDVEDLEEDFVVQVNLCEEGEDGSMDNKFSVVKDSEKATGSQNIINNKSSGDDIFEDADVDH
        DEN + ++  + + ++ Q+  DPEIAALLDDDDLSRFGSDVEDLEEDFVVQ NLCEEGEDGS DNKFSV +DS++ATGSQNI+NNKS GDDIFEDADVDH
Subjt:  DENEVVELMIRLLMLRPQS--DPEIAALLDDDDLSRFGSDVEDLEEDFVVQVNLCEEGEDGSMDNKFSVVKDSEKATGSQNIINNKSSGDDIFEDADVDH

Query:  VEDDVDKPRTRQLLDDRFDTLLSQDYASSDNGDSACDEHDGWVAEEDESLAQKLKHALDDHSKDDLDLDQGYKA----------SADQELLQSTSDVIHR
        VEDDVDKPRTR+LLDD+FDTLLS+DYAS D+G S CDEHDGWVAEEDES AQKLKHAL DHSKDDLDLDQGYKA          SADQELLQS SDVIHR
Subjt:  VEDDVDKPRTRQLLDDRFDTLLSQDYASSDNGDSACDEHDGWVAEEDESLAQKLKHALDDHSKDDLDLDQGYKA----------SADQELLQSTSDVIHR

Query:  CMEYAESAQVE
        CMEYAE  Q E
Subjt:  CMEYAESAQVE

XP_022963858.1 uncharacterized protein LOC111464046 [Cucurbita moschata]6.0e-14377.78Show/hide
Query:  STTYASEFDSLQISHLDSLFFSDFNSIAPDDPSVYSTALDLRFDENEVVELMI-------------RLLMLR----------------PQSDPEIAALLD
        STTYASEFDSLQISHLDSLFFSDFNSIAPDDPSVYSTALDLRFDENEVVEL                 L+L                 PQSDPEIAALLD
Subjt:  STTYASEFDSLQISHLDSLFFSDFNSIAPDDPSVYSTALDLRFDENEVVELMI-------------RLLMLR----------------PQSDPEIAALLD

Query:  DDDLSRFGSDVEDLEEDFVVQVNLCEEGEDGSMDNKFSVVKDSEKATGSQNIINNKSSGDDIFEDADVDHVEDDVDKPRTRQLLDDRFDTLLSQDYASSD
        DDDLSRFGSDVEDLEEDFVVQ                                           DADVDHVEDDVDKPRTRQLLDDRFD LLSQDYASSD
Subjt:  DDDLSRFGSDVEDLEEDFVVQVNLCEEGEDGSMDNKFSVVKDSEKATGSQNIINNKSSGDDIFEDADVDHVEDDVDKPRTRQLLDDRFDTLLSQDYASSD

Query:  NGDSACDEHDGWVAEEDESLAQKLKHALDDHSKDDLDLDQGYKASADQELLQSTSDVIHRCMEYAESAQVEMNYYSFSLELNRCDVELIKKEIIEHDVSV
        NGDSACDEHDGWVAEEDESLAQKLKHALDDHSKDDLDLDQGYKAS DQELLQSTSDVIHRCMEYAESAQVEMNYYSFSLELNRC+VELIKKEIIEHDVSV
Subjt:  NGDSACDEHDGWVAEEDESLAQKLKHALDDHSKDDLDLDQGYKASADQELLQSTSDVIHRCMEYAESAQVEMNYYSFSLELNRCDVELIKKEIIEHDVSV

Query:  SYSGGGVPKKSIRKPNWKKFFVDYFVRENVLTQDVELQEIHTNEQVVDIFTKALAKVKFEVFRRSSRSY
        SYSGGGVPKKSIRKPNWKKFFVDYFVRENVLTQDVELQEIHTNEQV DIFTKALAKVKFEVFRRSSRSY
Subjt:  SYSGGGVPKKSIRKPNWKKFFVDYFVRENVLTQDVELQEIHTNEQVVDIFTKALAKVKFEVFRRSSRSY

XP_023535311.1 uncharacterized protein LOC111796785 [Cucurbita pepo subsp. pepo]4.0e-9959.3Show/hide
Query:  MDNKFSVVKDSEKATGSQNIINNKSSGDDIFEDADVDHVEDDVDKPRTRQLLDDRFDTLLSQDYASSDNGDSACDEHDGWVAEEDESLAQKLKHALDDHS
        MDNKFSV KD EKAT SQNIINNKS GDDIFEDADVDHVEDDVDKPRTRQLLDDRFDTLLSQDYASSDN DSACDEHDGWVAEEDESLAQKLKHALDDHS
Subjt:  MDNKFSVVKDSEKATGSQNIINNKSSGDDIFEDADVDHVEDDVDKPRTRQLLDDRFDTLLSQDYASSDNGDSACDEHDGWVAEEDESLAQKLKHALDDHS

Query:  KDDLDLDQGYKA----------SADQELLQSTSDVIHRCMEYAESAQVEMNYYSFSLE------------------------------------------
        KDDLDLDQGYKA          S DQELLQS SDVIHRCMEYAESAQVEMNYYS SLE                                          
Subjt:  KDDLDLDQGYKA----------SADQELLQSTSDVIHRCMEYAESAQVEMNYYSFSLE------------------------------------------

Query:  ----------------------------------------------------------------------------------LNRCDVELIKKEIIEHDV
                                                                                          LNRCDV+ IKKEII+HD+
Subjt:  ----------------------------------------------------------------------------------LNRCDVELIKKEIIEHDV

Query:  SVSYSGGGVPKKSIRKPNWKKFFVDYFVRENVLTQDVELQEIHTNEQVVDIFTKALAKVKFEVFRRSSRSY
        S+SYSGGG+PKKSI KP+WKKFFVDYFVRE VLTQDVELQEIHTNEQVVDIFTKALAKVKFEVFRRSSRSY
Subjt:  SVSYSGGGVPKKSIRKPNWKKFFVDYFVRENVLTQDVELQEIHTNEQVVDIFTKALAKVKFEVFRRSSRSY

XP_023542088.1 uncharacterized protein LOC111802075 isoform X1 [Cucurbita pepo subsp. pepo]1.6e-24987.52Show/hide
Query:  LENELAMVTQGSLKQMTSRNEFSPKSEDVLYVKDQRRQNFHSKLSSSNGNQFRSEESSKKPIKTCYRCGKPGHFQRDCEVKVVCHHCGKSGHIKPNCRVK
        LEN L+   +  +KQMTS NEFSPK E VLYVKDQRRQNFHS+ SSSN NQFRS+ESSKKP K CYRCGKPGHF+RDC+ KVVC HCGK GHIKPNCRVK
Subjt:  LENELAMVTQGSLKQMTSRNEFSPKSEDVLYVKDQRRQNFHSKLSSSNGNQFRSEESSKKPIKTCYRCGKPGHFQRDCEVKVVCHHCGKSGHIKPNCRVK

Query:  MQESEANAVHENRSSPDPIWEYCLTTEVLNQPTNVTSAVYQDDVSIGDQNSNSTTYASEFDSLQISHLDSLFFSDFNSIAPDDPSVYSTALDLRFDENEV
        MQESEANAVHEN+SSPDPIWEYCLTTEVL+QPTNVTSAVYQDDVS GDQNSNSTTYASEFDSLQISHLDSLFFSDFNSIAPDDPSVYSTALDLRFDENEV
Subjt:  MQESEANAVHENRSSPDPIWEYCLTTEVLNQPTNVTSAVYQDDVSIGDQNSNSTTYASEFDSLQISHLDSLFFSDFNSIAPDDPSVYSTALDLRFDENEV

Query:  VELMI-------------RLLMLR----------------PQSDPEIAALLDDDDLSRFGSDVEDLEEDFVVQVNLCEEGEDGSMDNKFSVVKDSEKATG
        VEL                 L+L                 PQSDPEIAALLDDDDLSRFGSDVEDLEEDFVVQVNLCEEGEDGSMDNKFSV KDSEKATG
Subjt:  VELMI-------------RLLMLR----------------PQSDPEIAALLDDDDLSRFGSDVEDLEEDFVVQVNLCEEGEDGSMDNKFSVVKDSEKATG

Query:  SQNIINNKSSGDDIFEDADVDHVEDDVDKPRTRQLLDDRFDTLLSQDYASSDNGDSACDEHDGWVAEEDESLAQKLKHALDDHSKDDLDLDQGYKASADQ
        SQNIINNKS GDDIFEDADVDHVEDDVDKPRTRQLLDDRFDTLLSQDYASSDNGDSACDEHDGWVAEEDESLAQKLKHALDDHSKDDLDLDQGYKASADQ
Subjt:  SQNIINNKSSGDDIFEDADVDHVEDDVDKPRTRQLLDDRFDTLLSQDYASSDNGDSACDEHDGWVAEEDESLAQKLKHALDDHSKDDLDLDQGYKASADQ

Query:  ELLQSTSDVIHRCMEYAESAQVEMNYYSFSLELNRCDVELIKKEIIEHDVSVSYSGGGVPKKSIRKPNWKKFFVDYFVRENVLTQDVELQEIHTNEQVVD
        ELLQSTSDVIHRCMEYAESAQVEMNYYSFSLELNRCDVELIKKEIIEHDVSVSYSGGGVPKKSIRKPNWKKFFVDYFVRENVLTQDVELQEIHTNEQV D
Subjt:  ELLQSTSDVIHRCMEYAESAQVEMNYYSFSLELNRCDVELIKKEIIEHDVSVSYSGGGVPKKSIRKPNWKKFFVDYFVRENVLTQDVELQEIHTNEQVVD

Query:  IFTKALAKVKFEVFRRSSRSY
        IFTK LAKVKFEVFRRSSRSY
Subjt:  IFTKALAKVKFEVFRRSSRSY

XP_023542089.1 uncharacterized protein LOC111802075 isoform X2 [Cucurbita pepo subsp. pepo]4.0e-24888.93Show/hide
Query:  MTSRNEFSPKSEDVLYVKDQRRQNFHSKLSSSNGNQFRSEESSKKPIKTCYRCGKPGHFQRDCEVKVVCHHCGKSGHIKPNCRVKMQESEANAVHENRSS
        MTS NEFSPK E VLYVKDQRRQNFHS+ SSSN NQFRS+ESSKKP K CYRCGKPGHF+RDC+ KVVC HCGK GHIKPNCRVKMQESEANAVHEN+SS
Subjt:  MTSRNEFSPKSEDVLYVKDQRRQNFHSKLSSSNGNQFRSEESSKKPIKTCYRCGKPGHFQRDCEVKVVCHHCGKSGHIKPNCRVKMQESEANAVHENRSS

Query:  PDPIWEYCLTTEVLNQPTNVTSAVYQDDVSIGDQNSNSTTYASEFDSLQISHLDSLFFSDFNSIAPDDPSVYSTALDLRFDENEVVELMI----------
        PDPIWEYCLTTEVL+QPTNVTSAVYQDDVS GDQNSNSTTYASEFDSLQISHLDSLFFSDFNSIAPDDPSVYSTALDLRFDENEVVEL            
Subjt:  PDPIWEYCLTTEVLNQPTNVTSAVYQDDVSIGDQNSNSTTYASEFDSLQISHLDSLFFSDFNSIAPDDPSVYSTALDLRFDENEVVELMI----------

Query:  ---RLLMLR----------------PQSDPEIAALLDDDDLSRFGSDVEDLEEDFVVQVNLCEEGEDGSMDNKFSVVKDSEKATGSQNIINNKSSGDDIF
             L+L                 PQSDPEIAALLDDDDLSRFGSDVEDLEEDFVVQVNLCEEGEDGSMDNKFSV KDSEKATGSQNIINNKS GDDIF
Subjt:  ---RLLMLR----------------PQSDPEIAALLDDDDLSRFGSDVEDLEEDFVVQVNLCEEGEDGSMDNKFSVVKDSEKATGSQNIINNKSSGDDIF

Query:  EDADVDHVEDDVDKPRTRQLLDDRFDTLLSQDYASSDNGDSACDEHDGWVAEEDESLAQKLKHALDDHSKDDLDLDQGYKASADQELLQSTSDVIHRCME
        EDADVDHVEDDVDKPRTRQLLDDRFDTLLSQDYASSDNGDSACDEHDGWVAEEDESLAQKLKHALDDHSKDDLDLDQGYKASADQELLQSTSDVIHRCME
Subjt:  EDADVDHVEDDVDKPRTRQLLDDRFDTLLSQDYASSDNGDSACDEHDGWVAEEDESLAQKLKHALDDHSKDDLDLDQGYKASADQELLQSTSDVIHRCME

Query:  YAESAQVEMNYYSFSLELNRCDVELIKKEIIEHDVSVSYSGGGVPKKSIRKPNWKKFFVDYFVRENVLTQDVELQEIHTNEQVVDIFTKALAKVKFEVFR
        YAESAQVEMNYYSFSLELNRCDVELIKKEIIEHDVSVSYSGGGVPKKSIRKPNWKKFFVDYFVRENVLTQDVELQEIHTNEQV DIFTK LAKVKFEVFR
Subjt:  YAESAQVEMNYYSFSLELNRCDVELIKKEIIEHDVSVSYSGGGVPKKSIRKPNWKKFFVDYFVRENVLTQDVELQEIHTNEQVVDIFTKALAKVKFEVFR

Query:  RSSRSY
        RSSRSY
Subjt:  RSSRSY

TrEMBL top hitse value%identityAlignment
A0A5J5BCB3 Uncharacterized protein2.5e-7047.95Show/hide
Query:  MEKLVGNNYSYWKLCMEAYLQGQDLWDLIEGDDTEIPADTPQNAKLRQQWKIKCGKTLFTLRTLISKEYIDHVRDLKSPKQVWDTLQKLFTKKNTARLQF
        ++KLVGNNYSYWKLCMEAYLQGQDLWDLI GDD  IP DTPQNA+LR++WKIKCGK LF LRT IS+EYI HVRD KSPKQVW+TL++LFT+KNT RLQF
Subjt:  MEKLVGNNYSYWKLCMEAYLQGQDLWDLIEGDDTEIPADTPQNAKLRQQWKIKCGKTLFTLRTLISKEYIDHVRDLKSPKQVWDTLQKLFTKKNTARLQF

Query:  LENELAMVTQGSL------------------------------------------------------------------------KQMTSRNEFSPKS-E
        LEN+LA +TQ +L                                                                        KQM S N+ SP   E
Subjt:  LENELAMVTQGSL------------------------------------------------------------------------KQMTSRNEFSPKS-E

Query:  DVLYVKDQRRQNFHSKLSSSNGNQFRSEESSKKPIKTCYRCGKPGHFQRDCEVKVVCHHCGKSGHIKPNCRVKMQESEANAVHENRSSPDPIWEYCLTTE
        D LY KD+ + N  SK SS +  Q ++E  S+   ++CYRCGK GH +RDC VKVVC+ CGKSGHIK NCRV +  + AN  HE        WE CL+ E
Subjt:  DVLYVKDQRRQNFHSKLSSSNGNQFRSEESSKKPIKTCYRCGKPGHFQRDCEVKVVCHHCGKSGHIKPNCRVKMQESEANAVHENRSSPDPIWEYCLTTE

Query:  VLNQPTNVTSAVYQDDV
         ++QP  + S V Q +V
Subjt:  VLNQPTNVTSAVYQDDV

A0A6J1FJD8 protein LTV1 homolog1.1e-7877.25Show/hide
Query:  DENEVVELMIRLLMLRPQS--DPEIAALLDDDDLSRFGSDVEDLEEDFVVQVNLCEEGEDGSMDNKFSVVKDSEKATGSQNIINNKSSGDDIFEDADVDH
        DEN + ++  + + ++ Q+  DPEIAALLDDDDLSRFGSDVEDLEEDFVVQ NLCEEGEDGS DNKFSV +DS++ATGSQNI+NNKS GDDIFEDADVDH
Subjt:  DENEVVELMIRLLMLRPQS--DPEIAALLDDDDLSRFGSDVEDLEEDFVVQVNLCEEGEDGSMDNKFSVVKDSEKATGSQNIINNKSSGDDIFEDADVDH

Query:  VEDDVDKPRTRQLLDDRFDTLLSQDYASSDNGDSACDEHDGWVAEEDESLAQKLKHALDDHSKDDLDLDQGYKA----------SADQELLQSTSDVIHR
        VEDDVDKPRTR+LLDD+FDTLLS+DYAS D+G S CDEHDGWVAEEDES AQKLKHAL DHSKDDLDLDQGYKA          SADQELLQS SDVIHR
Subjt:  VEDDVDKPRTRQLLDDRFDTLLSQDYASSDNGDSACDEHDGWVAEEDESLAQKLKHALDDHSKDDLDLDQGYKA----------SADQELLQSTSDVIHR

Query:  CMEYAESAQVE
        CMEYAE  Q E
Subjt:  CMEYAESAQVE

A0A6J1GDV3 uncharacterized protein LOC1114531011.1e-7383.14Show/hide
Query:  LENELAMVTQGSLKQMTSRNEFSPKSEDVLYVKDQRRQNFHSKLSSSNGNQFRSEESSKKPIKTCYRCGKPGHFQRDCEVKVVCHHCGKSGHIKPNCRVK
        LEN L+   +  ++QMT+ NEFSPK E VLYVKDQRRQNFHS+ SSSN NQFRS+ESSKKP K CYRCGK GHF+RDC+ KVVC HCGK GHIKPNCRVK
Subjt:  LENELAMVTQGSLKQMTSRNEFSPKSEDVLYVKDQRRQNFHSKLSSSNGNQFRSEESSKKPIKTCYRCGKPGHFQRDCEVKVVCHHCGKSGHIKPNCRVK

Query:  MQESEANAVHENRSSPDPIWEYCLTTEVLNQPTNVTSAVYQDDVSIGDQNSNSTTYASEFDSLQISHLDSLF
        MQESEANAVHEN+SSPDPIWEYCLTTEVL+QPTNVTSAVYQDDVS GDQNSNSTTYASEFDSLQISHLDSLF
Subjt:  MQESEANAVHENRSSPDPIWEYCLTTEVLNQPTNVTSAVYQDDVSIGDQNSNSTTYASEFDSLQISHLDSLF

A0A6J1HJ50 uncharacterized protein LOC1114640462.9e-14377.78Show/hide
Query:  STTYASEFDSLQISHLDSLFFSDFNSIAPDDPSVYSTALDLRFDENEVVELMI-------------RLLMLR----------------PQSDPEIAALLD
        STTYASEFDSLQISHLDSLFFSDFNSIAPDDPSVYSTALDLRFDENEVVEL                 L+L                 PQSDPEIAALLD
Subjt:  STTYASEFDSLQISHLDSLFFSDFNSIAPDDPSVYSTALDLRFDENEVVELMI-------------RLLMLR----------------PQSDPEIAALLD

Query:  DDDLSRFGSDVEDLEEDFVVQVNLCEEGEDGSMDNKFSVVKDSEKATGSQNIINNKSSGDDIFEDADVDHVEDDVDKPRTRQLLDDRFDTLLSQDYASSD
        DDDLSRFGSDVEDLEEDFVVQ                                           DADVDHVEDDVDKPRTRQLLDDRFD LLSQDYASSD
Subjt:  DDDLSRFGSDVEDLEEDFVVQVNLCEEGEDGSMDNKFSVVKDSEKATGSQNIINNKSSGDDIFEDADVDHVEDDVDKPRTRQLLDDRFDTLLSQDYASSD

Query:  NGDSACDEHDGWVAEEDESLAQKLKHALDDHSKDDLDLDQGYKASADQELLQSTSDVIHRCMEYAESAQVEMNYYSFSLELNRCDVELIKKEIIEHDVSV
        NGDSACDEHDGWVAEEDESLAQKLKHALDDHSKDDLDLDQGYKAS DQELLQSTSDVIHRCMEYAESAQVEMNYYSFSLELNRC+VELIKKEIIEHDVSV
Subjt:  NGDSACDEHDGWVAEEDESLAQKLKHALDDHSKDDLDLDQGYKASADQELLQSTSDVIHRCMEYAESAQVEMNYYSFSLELNRCDVELIKKEIIEHDVSV

Query:  SYSGGGVPKKSIRKPNWKKFFVDYFVRENVLTQDVELQEIHTNEQVVDIFTKALAKVKFEVFRRSSRSY
        SYSGGGVPKKSIRKPNWKKFFVDYFVRENVLTQDVELQEIHTNEQV DIFTKALAKVKFEVFRRSSRSY
Subjt:  SYSGGGVPKKSIRKPNWKKFFVDYFVRENVLTQDVELQEIHTNEQVVDIFTKALAKVKFEVFRRSSRSY

A0A6J1J360 protein LTV1 homolog2.8e-7482.11Show/hide
Query:  DPEIAALLDDDDLSRFGSDVEDLEEDFVVQVNLCEEGEDGSMDNKFSVVKDSEKATGSQNIINNKSSGDDIFEDADVDHVEDDVDKPRTRQLLDDRFDTL
        DPEIAALLDDDDLSRFGSDVEDLEEDFVVQ NLCEEGE GS  NKFSV +DSE+ATGSQNIINNKS GD+IFEDADVDHVEDDVDKPRTR+LLDD+FDTL
Subjt:  DPEIAALLDDDDLSRFGSDVEDLEEDFVVQVNLCEEGEDGSMDNKFSVVKDSEKATGSQNIINNKSSGDDIFEDADVDHVEDDVDKPRTRQLLDDRFDTL

Query:  LSQDYASSDNGDSACDEHDGWVAEEDESLAQKLKHALDDHSKDDLDLDQGYKA----------SADQELLQSTSDVIHRCMEYAESAQVE
        LS+DYAS D+G   CDEHD WVAEE ESLAQKLKHAL DHSKDDLDLDQGYKA          SADQELLQS SDVIHRCMEYAE  Q E
Subjt:  LSQDYASSDNGDSACDEHDGWVAEEDESLAQKLKHALDDHSKDDLDLDQGYKA----------SADQELLQSTSDVIHRCMEYAESAQVE

SwissProt top hitse value%identityAlignment
P03352 Gag polyprotein9.0e-0956.41Show/hide
Query:  CYRCGKPGHFQRDCEVKVVCHHCGKSGHIKPNCRVKMQE
        CY CGKPGH  R C   ++CHHCGK GH++ +CR K Q+
Subjt:  CYRCGKPGHFQRDCEVKVVCHHCGKSGHIKPNCRVKMQE

P03370 Gag-Pol polyprotein6.9e-0953.66Show/hide
Query:  CYRCGKPGHFQRDCEVKVVCHHCGKSGHIKPNCRVKMQESE
        CY CGKPGH  R C   ++CHHCGK GH++ +CR K Q+ +
Subjt:  CYRCGKPGHFQRDCEVKVVCHHCGKSGHIKPNCRVKMQESE

P23426 Gag-Pol polyprotein6.9e-0953.66Show/hide
Query:  CYRCGKPGHFQRDCEVKVVCHHCGKSGHIKPNCRVKMQESE
        CY CGKPGH  R C   ++CHHCGK GH++ +CR K Q+ +
Subjt:  CYRCGKPGHFQRDCEVKVVCHHCGKSGHIKPNCRVKMQESE

P23427 Gag-Pol polyprotein6.9e-0953.66Show/hide
Query:  CYRCGKPGHFQRDCEVKVVCHHCGKSGHIKPNCRVKMQESE
        CY CGKPGH  R C   ++CHHCGK GH++ +CR K Q+ +
Subjt:  CYRCGKPGHFQRDCEVKVVCHHCGKSGHIKPNCRVKMQESE

P35956 Gag-Pol polyprotein6.9e-0953.66Show/hide
Query:  CYRCGKPGHFQRDCEVKVVCHHCGKSGHIKPNCRVKMQESE
        CY CGKPGH  R C   ++CHHCGK GH++ +CR K Q+ +
Subjt:  CYRCGKPGHFQRDCEVKVVCHHCGKSGHIKPNCRVKMQESE

Arabidopsis top hitse value%identityAlignment
AT1G05150.1 Calcium-binding tetratricopeptide family protein6.6e-0763.89Show/hide
Query:  LNRCDVELIKKEIIEHDVSVSYSGGGVPKKSIRKPN
        L +CDVE ++KE+ ++DV VSYSG G P KSIRKPN
Subjt:  LNRCDVELIKKEIIEHDVSVSYSGGGVPKKSIRKPN

AT1G75560.1 zinc knuckle (CCHC-type) family protein3.1e-0431.33Show/hide
Query:  SRNEFSPKSEDVLYVKDQRRQNFHSKLSSSNGNQFRSEESSKKPI---KTCYRCGKPGHFQRDCEVKVVCHHCGKSGHIKPNC
        SR+    +S D    +  R +   S+  S +    R E   ++       C  C +PGHF RDC    VC++CG  GHI   C
Subjt:  SRNEFSPKSEDVLYVKDQRRQNFHSKLSSSNGNQFRSEESSKKPI---KTCYRCGKPGHFQRDCEVKVVCHHCGKSGHIKPNC

AT1G75560.2 zinc knuckle (CCHC-type) family protein3.1e-0431.33Show/hide
Query:  SRNEFSPKSEDVLYVKDQRRQNFHSKLSSSNGNQFRSEESSKKPI---KTCYRCGKPGHFQRDCEVKVVCHHCGKSGHIKPNC
        SR+    +S D    +  R +   S+  S +    R E   ++       C  C +PGHF RDC    VC++CG  GHI   C
Subjt:  SRNEFSPKSEDVLYVKDQRRQNFHSKLSSSNGNQFRSEESSKKPI---KTCYRCGKPGHFQRDCEVKVVCHHCGKSGHIKPNC

AT2G32450.1 Calcium-binding tetratricopeptide family protein9.5e-0655.88Show/hide
Query:  RCDVELIKKEIIEHDVSVSYSGGGVPKKSIRKPN
        +CDVE +++E+ +++V VSYSG G+P KSIR+PN
Subjt:  RCDVELIKKEIIEHDVSVSYSGGGVPKKSIRKPN

AT3G49990.1 unknown protein1.3e-1533.86Show/hide
Query:  DPEIAALLDDDDLSRFGSDVEDLEEDFVVQVNLCEEGEDGSMDN---KFSVVKDSEKATGSQNIINNKSSGDDIFEDADVDHVEDDVDKPRTRQLLDDRF
        DPE+AALL++ D S FGSDVEDLEEDFVVQ NL ++GE   + N   +FSV ++          +  + S + + E+            PR  + +D+ F
Subjt:  DPEIAALLDDDDLSRFGSDVEDLEEDFVVQVNLCEEGEDGSMDN---KFSVVKDSEKATGSQNIINNKSSGDDIFEDADVDHVEDDVDKPRTRQLLDDRF

Query:  DTLLSQDYASSDNGDSACDEHDGWVAEEDESLAQKLKHALDDHSKDDLDLDQGYKASA----------DQELLQSTSDVIHRCMEYAES
        D L   +Y S  +GD    E DG   EE++ +AQ++++ +   +K D +L++ Y   A          D+E + + + VI R +EY E+
Subjt:  DTLLSQDYASSDNGDSACDEHDGWVAEEDESLAQKLKHALDDHSKDDLDLDQGYKASA----------DQELLQSTSDVIHRCMEYAES


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGAAAAGCTGGTTGGCAATAACTATAGTTATTGGAAGTTATGCATGGAAGCTTATCTACAAGGGCAAGATTTATGGGATTTAATTGAAGGTGATGACACAGAAATTCC
AGCCGATACTCCACAAAATGCAAAATTACGTCAACAATGGAAGATCAAGTGCGGAAAAACCTTATTTACCTTGCGAACTTTGATTAGCAAGGAGTATATTGATCATGTTC
GTGATTTAAAGTCACCAAAGCAAGTATGGGATACACTTCAAAAGTTGTTCACCAAGAAAAATACCGCTCGACTGCAATTTCTAGAGAATGAACTAGCTATGGTAACTCAA
GGAAGCCTTAAGCAAATGACTAGCAGGAACGAGTTTTCCCCAAAGTCAGAAGATGTGTTATATGTCAAAGATCAAAGGAGACAGAATTTTCACTCAAAGCTTTCATCAAG
CAATGGGAATCAATTCAGAAGTGAGGAGTCGTCAAAGAAACCAATTAAAACTTGTTACAGGTGCGGAAAACCAGGCCATTTTCAACGGGATTGTGAGGTGAAAGTGGTGT
GTCATCATTGCGGAAAGTCAGGCCATATTAAACCAAATTGCAGAGTCAAGATGCAGGAATCAGAAGCAAATGCGGTACATGAAAATAGAAGTTCTCCAGATCCAATTTGG
GAATATTGCTTAACCACTGAGGTTCTTAACCAGCCAACAAACGTGACTTCAGCCGTATATCAAGATGATGTTTCTATAGGTGATCAAAATTCTAATTCGACTACTTACGC
TTCTGAGTTTGATTCTCTCCAAATTTCGCATCTGGACTCTCTCTTTTTCTCCGATTTCAATTCTATTGCCCCTGATGACCCTTCTGTTTACTCCACGGCCTTGGATTTGA
GATTCGACGAAAATGAAGTTGTCGAGCTAATGATTCGGCTACTGATGCTCCGCCCCCAGTCTGACCCAGAAATAGCTGCACTGCTTGATGATGATGATTTATCACGATTT
GGTTCTGATGTTGAGGACTTGGAGGAGGATTTCGTAGTTCAAGTAAATTTATGTGAAGAAGGGGAGGATGGTTCAATGGATAATAAGTTTAGTGTGGTTAAGGATTCTGA
GAAGGCGACAGGAAGCCAGAATATTATTAATAATAAATCTTCTGGCGATGACATTTTTGAGGATGCAGATGTTGACCATGTGGAGGATGATGTTGATAAGCCACGAACTC
GACAGCTTTTGGATGATCGATTTGATACCCTCTTAAGTCAGGACTATGCATCTAGTGACAACGGTGACAGTGCTTGTGATGAGCATGATGGTTGGGTAGCTGAAGAAGAT
GAGTCCCTTGCTCAAAAGCTCAAGCATGCCCTTGATGATCATAGTAAGGATGACTTGGACCTTGACCAAGGATATAAAGCTTCTGCAGATCAAGAGCTTTTGCAGTCTAC
TAGTGATGTAATTCACCGGTGTATGGAGTATGCTGAGTCTGCACAAGTTGAGATGAATTATTACTCTTTCTCATTAGAATTGAATCGCTGCGATGTGGAACTTATTAAGA
AGGAAATCATTGAACATGATGTGTCAGTGTCTTATTCAGGTGGTGGCGTGCCTAAGAAGTCCATACGCAAGCCTAACTGGAAGAAATTCTTCGTAGATTATTTTGTTCGA
GAGAACGTGTTAACGCAGGATGTTGAATTGCAGGAAATACATACTAATGAGCAAGTTGTAGACATATTTACTAAGGCACTTGCCAAAGTGAAGTTTGAAGTTTTTCGTAG
AAGCTCTCGGAGTTATTGA
mRNA sequenceShow/hide mRNA sequence
ATGGAAAAGCTGGTTGGCAATAACTATAGTTATTGGAAGTTATGCATGGAAGCTTATCTACAAGGGCAAGATTTATGGGATTTAATTGAAGGTGATGACACAGAAATTCC
AGCCGATACTCCACAAAATGCAAAATTACGTCAACAATGGAAGATCAAGTGCGGAAAAACCTTATTTACCTTGCGAACTTTGATTAGCAAGGAGTATATTGATCATGTTC
GTGATTTAAAGTCACCAAAGCAAGTATGGGATACACTTCAAAAGTTGTTCACCAAGAAAAATACCGCTCGACTGCAATTTCTAGAGAATGAACTAGCTATGGTAACTCAA
GGAAGCCTTAAGCAAATGACTAGCAGGAACGAGTTTTCCCCAAAGTCAGAAGATGTGTTATATGTCAAAGATCAAAGGAGACAGAATTTTCACTCAAAGCTTTCATCAAG
CAATGGGAATCAATTCAGAAGTGAGGAGTCGTCAAAGAAACCAATTAAAACTTGTTACAGGTGCGGAAAACCAGGCCATTTTCAACGGGATTGTGAGGTGAAAGTGGTGT
GTCATCATTGCGGAAAGTCAGGCCATATTAAACCAAATTGCAGAGTCAAGATGCAGGAATCAGAAGCAAATGCGGTACATGAAAATAGAAGTTCTCCAGATCCAATTTGG
GAATATTGCTTAACCACTGAGGTTCTTAACCAGCCAACAAACGTGACTTCAGCCGTATATCAAGATGATGTTTCTATAGGTGATCAAAATTCTAATTCGACTACTTACGC
TTCTGAGTTTGATTCTCTCCAAATTTCGCATCTGGACTCTCTCTTTTTCTCCGATTTCAATTCTATTGCCCCTGATGACCCTTCTGTTTACTCCACGGCCTTGGATTTGA
GATTCGACGAAAATGAAGTTGTCGAGCTAATGATTCGGCTACTGATGCTCCGCCCCCAGTCTGACCCAGAAATAGCTGCACTGCTTGATGATGATGATTTATCACGATTT
GGTTCTGATGTTGAGGACTTGGAGGAGGATTTCGTAGTTCAAGTAAATTTATGTGAAGAAGGGGAGGATGGTTCAATGGATAATAAGTTTAGTGTGGTTAAGGATTCTGA
GAAGGCGACAGGAAGCCAGAATATTATTAATAATAAATCTTCTGGCGATGACATTTTTGAGGATGCAGATGTTGACCATGTGGAGGATGATGTTGATAAGCCACGAACTC
GACAGCTTTTGGATGATCGATTTGATACCCTCTTAAGTCAGGACTATGCATCTAGTGACAACGGTGACAGTGCTTGTGATGAGCATGATGGTTGGGTAGCTGAAGAAGAT
GAGTCCCTTGCTCAAAAGCTCAAGCATGCCCTTGATGATCATAGTAAGGATGACTTGGACCTTGACCAAGGATATAAAGCTTCTGCAGATCAAGAGCTTTTGCAGTCTAC
TAGTGATGTAATTCACCGGTGTATGGAGTATGCTGAGTCTGCACAAGTTGAGATGAATTATTACTCTTTCTCATTAGAATTGAATCGCTGCGATGTGGAACTTATTAAGA
AGGAAATCATTGAACATGATGTGTCAGTGTCTTATTCAGGTGGTGGCGTGCCTAAGAAGTCCATACGCAAGCCTAACTGGAAGAAATTCTTCGTAGATTATTTTGTTCGA
GAGAACGTGTTAACGCAGGATGTTGAATTGCAGGAAATACATACTAATGAGCAAGTTGTAGACATATTTACTAAGGCACTTGCCAAAGTGAAGTTTGAAGTTTTTCGTAG
AAGCTCTCGGAGTTATTGA
Protein sequenceShow/hide protein sequence
MEKLVGNNYSYWKLCMEAYLQGQDLWDLIEGDDTEIPADTPQNAKLRQQWKIKCGKTLFTLRTLISKEYIDHVRDLKSPKQVWDTLQKLFTKKNTARLQFLENELAMVTQ
GSLKQMTSRNEFSPKSEDVLYVKDQRRQNFHSKLSSSNGNQFRSEESSKKPIKTCYRCGKPGHFQRDCEVKVVCHHCGKSGHIKPNCRVKMQESEANAVHENRSSPDPIW
EYCLTTEVLNQPTNVTSAVYQDDVSIGDQNSNSTTYASEFDSLQISHLDSLFFSDFNSIAPDDPSVYSTALDLRFDENEVVELMIRLLMLRPQSDPEIAALLDDDDLSRF
GSDVEDLEEDFVVQVNLCEEGEDGSMDNKFSVVKDSEKATGSQNIINNKSSGDDIFEDADVDHVEDDVDKPRTRQLLDDRFDTLLSQDYASSDNGDSACDEHDGWVAEED
ESLAQKLKHALDDHSKDDLDLDQGYKASADQELLQSTSDVIHRCMEYAESAQVEMNYYSFSLELNRCDVELIKKEIIEHDVSVSYSGGGVPKKSIRKPNWKKFFVDYFVR
ENVLTQDVELQEIHTNEQVVDIFTKALAKVKFEVFRRSSRSY