; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

CmoCh13G002490 (gene) of Cucurbita moschata (Rifu) v1 genome

Gene IDCmoCh13G002490
OrganismCucurbita moschata Rifu (Cucurbita moschata (Rifu) v1)
DescriptionCCHC-type domain-containing protein
Genome locationCmo_Chr13:2069944..2071974
RNA-Seq ExpressionCmoCh13G002490
SyntenyCmoCh13G002490
Gene Ontology termsGO:0015074 - DNA integration (biological process)
GO:0003676 - nucleic acid binding (molecular function)
GO:0008270 - zinc ion binding (molecular function)
GO:0016740 - transferase activity (molecular function)
InterPro domainsIPR025724 - GAG-pre-integrase domain


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG6415063.1 hypothetical protein SASPL_122465 [Salvia splendens]2.0e-3837.36Show/hide
Query:  MCSNREMFFDFKEFIGGVVYMGNYSTCKMTGIDSVQIKMFDGVIQKLNDVRYVPNLKKNLIFFGVLDASGYHIILERGNLKVDRGALVTIKGTRRGSIYY
        MC  RE FFDF+E  GG+VYMGN S CK  GI S++++  DG  + L DVRYVP LKKNLI  G L++ G  +++  G LK   GALV +KG R+ ++YY
Subjt:  MCSNREMFFDFKEFIGGVVYMGNYSTCKMTGIDSVQIKMFDGVIQKLNDVRYVPNLKKNLIFFGVLDASGYHIILERGNLKVDRGALVTIKGTRRGSIYY

Query:  LNGTTIIGHAVVASS---KEQDISKLWHMRLGHVGENVLQTLVNHGVLKG---------ATTVCRD---------------------------------E
          G+T++G    A+S   K+ + +KLWH+RLGH GE  LQ L   G+LKG          T V RD                                 E
Subjt:  LNGTTIIGHAVVASS---KEQDISKLWHMRLGHVGENVLQTLVNHGVLKG---------ATTVCRD---------------------------------E

Query:  GIVRHFTVSGNGGKILLEEEQNLEEQSLVNEEVEETESIAKNRPQMVIRKPARFNDTITYAFSMIDGVPNTRI
         +V   T + N      EEE++ +E+    E  +++E IA  R +   +KPARF D + YA  ++D +  T +
Subjt:  GIVRHFTVSGNGGKILLEEEQNLEEQSLVNEEVEETESIAKNRPQMVIRKPARFNDTITYAFSMIDGVPNTRI

PSS08126.1 Endonuclease [Actinidia chinensis var. chinensis]2.2e-4054.72Show/hide
Query:  MCSNREMFFDFKEFIGGVVYMGNYSTCKMTGIDSVQIKMFDGVIQKLNDVRYVPNLKKNLIFFGVLDASGYHIILERGNLKVDRGALVTIKGTRRGSIYY
        MC +R+ F  F+E  GGVV MGN + CK  GI ++++KMF G ++ L DVRYVP+LKKNLI  G  D+ GY IILE G LKV RGALV +KGTRRG++Y+
Subjt:  MCSNREMFFDFKEFIGGVVYMGNYSTCKMTGIDSVQIKMFDGVIQKLNDVRYVPNLKKNLIFFGVLDASGYHIILERGNLKVDRGALVTIKGTRRGSIYY

Query:  LNGTTIIGHAVVA-SSKEQDISKLWHMRLGHVGENVLQTLVNHGVLKGATTVCRDEGIV
        L+G+T+ G   ++ SS E D SKLWHMRLGH GE  LQTL     +K  T + + EGI+
Subjt:  LNGTTIIGHAVVA-SSKEQDISKLWHMRLGHVGENVLQTLVNHGVLKGATTVCRDEGIV

PSS35035.1 Endonuclease [Actinidia chinensis var. chinensis]2.7e-4359.6Show/hide
Query:  MCSNREMFFDFKEFIGGVVYMGNYSTCKMTGIDSVQIKMFDGVIQKLNDVRYVPNLKKNLIFFGVLDASGYHIILERGNLKVDRGALVTIKGTRRGSIYY
        MC +R+ F  F+E  GGVV MGN + CK  GI ++++KMF G ++ L DVRYVP+LKKNLI  G  D+ GY IILE G LKV RGALV +KGTRRG++Y+
Subjt:  MCSNREMFFDFKEFIGGVVYMGNYSTCKMTGIDSVQIKMFDGVIQKLNDVRYVPNLKKNLIFFGVLDASGYHIILERGNLKVDRGALVTIKGTRRGSIYY

Query:  LNGTTIIGHAVVA-SSKEQDISKLWHMRLGHVGENVLQTLVNHGVLKGATT
        L+G+T+ G   ++ SS E D SKLWHMRLGH GE  LQTLV  GVLKGA T
Subjt:  LNGTTIIGHAVVA-SSKEQDISKLWHMRLGHVGENVLQTLVNHGVLKGATT

PSS35035.1 Endonuclease [Actinidia chinensis var. chinensis]2.3e-0254.76Show/hide
Query:  EETESIAKNRPQMVIRKPARFNDTITYAFSMIDGVPNTRIEA
        +  ESIA +RPQ VIR+PAR+ DT+ YA  +I+GVP T  +A
Subjt:  EETESIAKNRPQMVIRKPARFNDTITYAFSMIDGVPNTRIEA

PSS35035.1 Endonuclease [Actinidia chinensis var. chinensis]3.3e-4156.95Show/hide
Query:  MCSNREMFFDFKEFIGGVVYMGNYSTCKMTGIDSVQIKMFDGVIQKLNDVRYVPNLKKNLIFFGVLDASGYHIILERGNLKVDRGALVTIKGTRRGSIYY
        M   R++F   +EF GG+V MGN + CK  GI ++++KMFDG I+ L DVRYVP+LKKNL+  G LD+ GY + +E G LKV RGALV +KGTR+G++Y+
Subjt:  MCSNREMFFDFKEFIGGVVYMGNYSTCKMTGIDSVQIKMFDGVIQKLNDVRYVPNLKKNLIFFGVLDASGYHIILERGNLKVDRGALVTIKGTRRGSIYY

Query:  LNGTTIIGHAVVA-SSKEQDISKLWHMRLGHVGENVLQTLVNHGVLKGATT
        L+G+T+ G  VV+ SS E D S+LWHM LGH GE  LQTLV  GVLKGA T
Subjt:  LNGTTIIGHAVVA-SSKEQDISKLWHMRLGHVGENVLQTLVNHGVLKGATT

XP_022931734.1 uncharacterized protein LOC111437896 [Cucurbita moschata]2.0e-4683.05Show/hide
Query:  MCSNREMFFDFKEFIGGVVYMGNYSTCKMTGIDSVQIKMFDGVIQKLNDVRYVPNLKKNLIFFGVLDASGYHIILERGNLKVDRGALVTIKGTRRGSIYY
        MC NREMF DFKEF GGVVYMGN STCKMTGI SVQIKMFDGVI+KLNDVRYVP+LKKNLI  G+LDASGY II E  NLKV RGALV IKGTRRGSIYY
Subjt:  MCSNREMFFDFKEFIGGVVYMGNYSTCKMTGIDSVQIKMFDGVIQKLNDVRYVPNLKKNLIFFGVLDASGYHIILERGNLKVDRGALVTIKGTRRGSIYY

Query:  LNGTTIIGHAVVASSKEQ
        LN TTIIGHA VASSK++
Subjt:  LNGTTIIGHAVVASSKEQ

TrEMBL top hitse value%identityAlignment
A0A2R6QHR4 Endonuclease1.0e-4054.72Show/hide
Query:  MCSNREMFFDFKEFIGGVVYMGNYSTCKMTGIDSVQIKMFDGVIQKLNDVRYVPNLKKNLIFFGVLDASGYHIILERGNLKVDRGALVTIKGTRRGSIYY
        MC +R+ F  F+E  GGVV MGN + CK  GI ++++KMF G ++ L DVRYVP+LKKNLI  G  D+ GY IILE G LKV RGALV +KGTRRG++Y+
Subjt:  MCSNREMFFDFKEFIGGVVYMGNYSTCKMTGIDSVQIKMFDGVIQKLNDVRYVPNLKKNLIFFGVLDASGYHIILERGNLKVDRGALVTIKGTRRGSIYY

Query:  LNGTTIIGHAVVA-SSKEQDISKLWHMRLGHVGENVLQTLVNHGVLKGATTVCRDEGIV
        L+G+T+ G   ++ SS E D SKLWHMRLGH GE  LQTL     +K  T + + EGI+
Subjt:  LNGTTIIGHAVVA-SSKEQDISKLWHMRLGHVGENVLQTLVNHGVLKGATTVCRDEGIV

A0A2R6RYD4 Endonuclease1.3e-4359.6Show/hide
Query:  MCSNREMFFDFKEFIGGVVYMGNYSTCKMTGIDSVQIKMFDGVIQKLNDVRYVPNLKKNLIFFGVLDASGYHIILERGNLKVDRGALVTIKGTRRGSIYY
        MC +R+ F  F+E  GGVV MGN + CK  GI ++++KMF G ++ L DVRYVP+LKKNLI  G  D+ GY IILE G LKV RGALV +KGTRRG++Y+
Subjt:  MCSNREMFFDFKEFIGGVVYMGNYSTCKMTGIDSVQIKMFDGVIQKLNDVRYVPNLKKNLIFFGVLDASGYHIILERGNLKVDRGALVTIKGTRRGSIYY

Query:  LNGTTIIGHAVVA-SSKEQDISKLWHMRLGHVGENVLQTLVNHGVLKGATT
        L+G+T+ G   ++ SS E D SKLWHMRLGH GE  LQTLV  GVLKGA T
Subjt:  LNGTTIIGHAVVA-SSKEQDISKLWHMRLGHVGENVLQTLVNHGVLKGATT

A0A2R6RYD4 Endonuclease1.1e-0254.76Show/hide
Query:  EETESIAKNRPQMVIRKPARFNDTITYAFSMIDGVPNTRIEA
        +  ESIA +RPQ VIR+PAR+ DT+ YA  +I+GVP T  +A
Subjt:  EETESIAKNRPQMVIRKPARFNDTITYAFSMIDGVPNTRIEA

A0A2R6RYD4 Endonuclease1.6e-4156.95Show/hide
Query:  MCSNREMFFDFKEFIGGVVYMGNYSTCKMTGIDSVQIKMFDGVIQKLNDVRYVPNLKKNLIFFGVLDASGYHIILERGNLKVDRGALVTIKGTRRGSIYY
        M   R++F   +EF GG+V MGN + CK  GI ++++KMFDG I+ L DVRYVP+LKKNL+  G LD+ GY + +E G LKV RGALV +KGTR+G++Y+
Subjt:  MCSNREMFFDFKEFIGGVVYMGNYSTCKMTGIDSVQIKMFDGVIQKLNDVRYVPNLKKNLIFFGVLDASGYHIILERGNLKVDRGALVTIKGTRRGSIYY

Query:  LNGTTIIGHAVVA-SSKEQDISKLWHMRLGHVGENVLQTLVNHGVLKGATT
        L+G+T+ G  VV+ SS E D S+LWHM LGH GE  LQTLV  GVLKGA T
Subjt:  LNGTTIIGHAVVA-SSKEQDISKLWHMRLGHVGENVLQTLVNHGVLKGATT

A0A5B7BZJ7 Putative copia LTR rider1.2e-3956.21Show/hide
Query:  MCSNREMFFDFKEFIGGVVYMGNYSTCKMTGIDSVQIKMFDGVIQKLNDVRYVPNLKKNLIFFGVLDASGYHIILERGNLKVDRGALVTIKGTRRGSIYY
        MC +R+ F   +EF GGVV +GN + C   G+  +++KM +G I+ L +VRYVP+LKKNLI  GVLD+ GY II+E G LKV RGA V +KGTR+G++Y 
Subjt:  MCSNREMFFDFKEFIGGVVYMGNYSTCKMTGIDSVQIKMFDGVIQKLNDVRYVPNLKKNLIFFGVLDASGYHIILERGNLKVDRGALVTIKGTRRGSIYY

Query:  LNGTTIIGHAVVASS---KEQDISKLWHMRLGHVGENVLQTLVNHGVLKGATT
        L+G T+ G AVV+ S   +E D SKLWHMRLGH GE  LQ LV  GVLKGA T
Subjt:  LNGTTIIGHAVVASS---KEQDISKLWHMRLGHVGENVLQTLVNHGVLKGATT

A0A6J1EV26 Reverse transcriptase9.7e-4783.05Show/hide
Query:  MCSNREMFFDFKEFIGGVVYMGNYSTCKMTGIDSVQIKMFDGVIQKLNDVRYVPNLKKNLIFFGVLDASGYHIILERGNLKVDRGALVTIKGTRRGSIYY
        MC NREMF DFKEF GGVVYMGN STCKMTGI SVQIKMFDGVI+KLNDVRYVP+LKKNLI  G+LDASGY II E  NLKV RGALV IKGTRRGSIYY
Subjt:  MCSNREMFFDFKEFIGGVVYMGNYSTCKMTGIDSVQIKMFDGVIQKLNDVRYVPNLKKNLIFFGVLDASGYHIILERGNLKVDRGALVTIKGTRRGSIYY

Query:  LNGTTIIGHAVVASSKEQ
        LN TTIIGHA VASSK++
Subjt:  LNGTTIIGHAVVASSKEQ

SwissProt top hitse value%identityAlignment
P10978 Retrovirus-related Pol polyprotein from transposon TNT 1-942.5e-1534.46Show/hide
Query:  REMFFDFKEFIGGVVYMGNYSTCKMTGIDSVQIKMFDGVIQKLNDVRYVPNLKKNLIFFGVLDASGYHIILERGNLKVDRGALVTIKGTRRGSIYYLNGT
        R++F  +     G V MGN S  K+ GI  + IK   G    L DVR+VP+L+ NLI    LD  GY         ++ +G+LV  KG  RG++Y  N  
Subjt:  REMFFDFKEFIGGVVYMGNYSTCKMTGIDSVQIKMFDGVIQKLNDVRYVPNLKKNLIFFGVLDASGYHIILERGNLKVDRGALVTIKGTRRGSIYYLNGT

Query:  TIIGHAVVASSKEQDISKLWHMRLGHVGENVLQTLVNHGVL---KGAT
           G   + +++++    LWH R+GH+ E  LQ L    ++   KG T
Subjt:  TIIGHAVVASSKEQDISKLWHMRLGHVGENVLQTLVNHGVL---KGAT

Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGTGTTCCAACAGAGAGATGTTTTTTGACTTCAAAGAGTTCATTGGTGGAGTTGTCTATATGGGCAATTATAGTACTTGCAAGATGACGGGAATCGACTCAGTACAAAT
CAAGATGTTTGACGGGGTTATACAAAAACTCAATGATGTGAGGTATGTCCCTAACTTGAAGAAAAATTTGATTTTCTTTGGCGTTTTGGATGCAAGTGGTTATCATATCA
TTTTGGAAAGAGGGAATTTGAAAGTAGATCGTGGAGCTTTGGTGACAATTAAGGGAACTAGAAGAGGTAGCATATACTACCTCAACGGAACCACAATAATTGGGCATGCT
GTTGTGGCAAGTTCGAAAGAACAAGACATATCAAAATTATGGCACATGAGACTTGGGCATGTTGGTGAGAATGTGCTTCAGACATTGGTGAACCATGGAGTTCTCAAGGG
TGCCACAACTGTATGCCGAGATGAAGGGATCGTTCGACACTTCACTGTTTCTGGAAATGGTGGGAAAATTCTGCTTGAGGAGGAGCAAAACCTTGAGGAGCAGAGCCTTG
TAAATGAAGAAGTGGAGGAAACTGAGTCTATCGCCAAGAATAGACCACAAATGGTAATTCGAAAACCTGCAAGGTTTAATGATACAATAACATATGCTTTCTCTATGATT
GATGGAGTTCCCAACACACGTATTGAGGCTTGA
mRNA sequenceShow/hide mRNA sequence
ATGAAGGTAACCATGGCAAAAGAACTATGGGACAAGCTTGAGGCAAAATATATGCAAAAGAGTGTGGAAAATAAACTCTATTTGAAGAATAAACTCTTCCATTTTGACTA
CAAGAAAGGTACCTCAATGACTGAGCATTTGGAGGATTTTAACAAAATTATCATTGATTTGCTCAATCTTGATGTTAAGATTGATGATGAAGACAAGGCGTTGTTGTTAT
TAAATTCTTTGACAGAGTCCTACGAGTTTTTAGTAACCACCCTACTACATGGAATCACTGATATTGATTTTGAAGATGTTTCAAATGCCTTGATCAATAATGAGGTGCGA
AAGAAGGAAAAGGAGGCATATCAAGATTCTAGCTCAAATGTTCTCACTGCTCGTGAAAGGACTTCTACTTGGAAAAGGAGCGAATAAAGGCCATTGAAGAAAGATTGCCC
AATCTTAAAAGAGAAGGGGTCGAAGTCCAATGTGGTTAGAGATGACGACACTGATACAGATAATGCCTTGACGATCTCCTTGTCAGTCAGCGAAACCAGTGAATGGATTC
TTGATTCTAGGTGCTCCTATCATATGTGTTCCAACAGAGAGATGTTTTTTGACTTCAAAGAGTTCATTGGTGGAGTTGTCTATATGGGCAATTATAGTACTTGCAAGATG
ACGGGAATCGACTCAGTACAAATCAAGATGTTTGACGGGGTTATACAAAAACTCAATGATGTGAGGTATGTCCCTAACTTGAAGAAAAATTTGATTTTCTTTGGCGTTTT
GGATGCAAGTGGTTATCATATCATTTTGGAAAGAGGGAATTTGAAAGTAGATCGTGGAGCTTTGGTGACAATTAAGGGAACTAGAAGAGGTAGCATATACTACCTCAACG
GAACCACAATAATTGGGCATGCTGTTGTGGCAAGTTCGAAAGAACAAGACATATCAAAATTATGGCACATGAGACTTGGGCATGTTGGTGAGAATGTGCTTCAGACATTG
GTGAACCATGGAGTTCTCAAGGGTGCCACAACTGTATGCCGAGATGAAGGGATCGTTCGACACTTCACTGTTTCTGGAAATGGTGGGAAAATTCTGCTTGAGGAGGAGCA
AAACCTTGAGGAGCAGAGCCTTGTAAATGAAGAAGTGGAGGAAACTGAGTCTATCGCCAAGAATAGACCACAAATGGTAATTCGAAAACCTGCAAGGTTTAATGATACAA
TAACATATGCTTTCTCTATGATTGATGGAGTTCCCAACACACGTATTGAGGCTTGA
Protein sequenceShow/hide protein sequence
MCSNREMFFDFKEFIGGVVYMGNYSTCKMTGIDSVQIKMFDGVIQKLNDVRYVPNLKKNLIFFGVLDASGYHIILERGNLKVDRGALVTIKGTRRGSIYYLNGTTIIGHA
VVASSKEQDISKLWHMRLGHVGENVLQTLVNHGVLKGATTVCRDEGIVRHFTVSGNGGKILLEEEQNLEEQSLVNEEVEETESIAKNRPQMVIRKPARFNDTITYAFSMI
DGVPNTRIEA