CuGenDBv2

Gene ID	CmoCh13G002840
Organism	Cucurbita moschata Rifu (Cucurbita moschata (Rifu) v1)
Description	syndetin-like isoform X1
Genome location	Cmo_Chr13:2335895..2340223
RNA-Seq Expression	CmoCh13G002840
Synteny	CmoCh13G002840
Gene Ontology terms	GO:0032456 - endocytic recycling (biological process) GO:0042147 - retrograde transport, endosome to Golgi (biological process) GO:0005829 - cytosol (cellular component) GO:1990745 - EARP complex (cellular component)
InterPro domains	IPR019514 - Syndetin, C-terminal IPR040047 - Syndetin

Homology

Show/hide homology

GenBank top hits

e value

%identity

Alignment

XP_022964722.1 syndetin-like isoform X1 [Cucurbita moschata]

2.3e-85

100

Show/hide

Query:  YVDRIANAKWEVKELGLEHNGYVDLLLGEFKHYKTRLAHSGVRKEVQDLLLEYGLDIVAETLIEGISRIKRCSDEGRALMSLDLQVLINGLQHFVSENVK
        YVDRIANAKWEVKELGLEHNGYVDLLLGEFKHYKTRLAHSGVRKEVQDLLLEYGLDIVAETLIEGISRIKRCSDEGRALMSLDLQVLINGLQHFVSENVK
Subjt:  YVDRIANAKWEVKELGLEHNGYVDLLLGEFKHYKTRLAHSGVRKEVQDLLLEYGLDIVAETLIEGISRIKRCSDEGRALMSLDLQVLINGLQHFVSENVK

Query:  PKLQMVETFIKAYYLPETEYVHWARAHPEYSKSQVIGLVNLVASMKGWKRKTRLEILEKIE
        PKLQMVETFIKAYYLPETEYVHWARAHPEYSKSQVIGLVNLVASMKGWKRKTRLEILEKIE
Subjt:  PKLQMVETFIKAYYLPETEYVHWARAHPEYSKSQVIGLVNLVASMKGWKRKTRLEILEKIE

XP_022964723.1 syndetin-like isoform X2 [Cucurbita moschata]

2.3e-85

100

Show/hide

Query:  YVDRIANAKWEVKELGLEHNGYVDLLLGEFKHYKTRLAHSGVRKEVQDLLLEYGLDIVAETLIEGISRIKRCSDEGRALMSLDLQVLINGLQHFVSENVK
        YVDRIANAKWEVKELGLEHNGYVDLLLGEFKHYKTRLAHSGVRKEVQDLLLEYGLDIVAETLIEGISRIKRCSDEGRALMSLDLQVLINGLQHFVSENVK
Subjt:  YVDRIANAKWEVKELGLEHNGYVDLLLGEFKHYKTRLAHSGVRKEVQDLLLEYGLDIVAETLIEGISRIKRCSDEGRALMSLDLQVLINGLQHFVSENVK

Query:  PKLQMVETFIKAYYLPETEYVHWARAHPEYSKSQVIGLVNLVASMKGWKRKTRLEILEKIE
        PKLQMVETFIKAYYLPETEYVHWARAHPEYSKSQVIGLVNLVASMKGWKRKTRLEILEKIE
Subjt:  PKLQMVETFIKAYYLPETEYVHWARAHPEYSKSQVIGLVNLVASMKGWKRKTRLEILEKIE

XP_022970285.1 syndetin-like isoform X2 [Cucurbita maxima]

3.3e-84

98.76

Show/hide

Query:  YVDRIANAKWEVKELGLEHNGYVDLLLGEFKHYKTRLAHSGVRKEVQDLLLEYGLDIVAETLIEGISRIKRCSDEGRALMSLDLQVLINGLQHFVSENVK
        YVDRIANAKWEVKELGLEHNGYVDLLLGEFKHYKTRLAHSGVRKEVQDLLLEYGLDIVAETLIEGISRIKRCSDEGRALMSLDLQVLINGLQHFVS NVK
Subjt:  YVDRIANAKWEVKELGLEHNGYVDLLLGEFKHYKTRLAHSGVRKEVQDLLLEYGLDIVAETLIEGISRIKRCSDEGRALMSLDLQVLINGLQHFVSENVK

Query:  PKLQMVETFIKAYYLPETEYVHWARAHPEYSKSQVIGLVNLVASMKGWKRKTRLEILEKIE
        PKLQMVETFIKAYYLPETEYVHW RAHPEYSKSQVIGLVNLVASMKGWKRKTRLEILEKIE
Subjt:  PKLQMVETFIKAYYLPETEYVHWARAHPEYSKSQVIGLVNLVASMKGWKRKTRLEILEKIE

XP_023519395.1 syndetin-like isoform X1 [Cucurbita pepo subsp. pepo]

3.0e-85

99.38

Show/hide

Query:  YVDRIANAKWEVKELGLEHNGYVDLLLGEFKHYKTRLAHSGVRKEVQDLLLEYGLDIVAETLIEGISRIKRCSDEGRALMSLDLQVLINGLQHFVSENVK
        YVDRIANAKWEVKELGLEHNGYVDLLLGEFKHYKTRLAHSGVRKEVQDLLLEYGLDIVAETLIEGISR+KRCSDEGRALMSLDLQVLINGLQHFVSENVK
Subjt:  YVDRIANAKWEVKELGLEHNGYVDLLLGEFKHYKTRLAHSGVRKEVQDLLLEYGLDIVAETLIEGISRIKRCSDEGRALMSLDLQVLINGLQHFVSENVK

Query:  PKLQMVETFIKAYYLPETEYVHWARAHPEYSKSQVIGLVNLVASMKGWKRKTRLEILEKIE
        PKLQMVETFIKAYYLPETEYVHWARAHPEYSKSQVIGLVNLVASMKGWKRKTRLEILEKIE
Subjt:  PKLQMVETFIKAYYLPETEYVHWARAHPEYSKSQVIGLVNLVASMKGWKRKTRLEILEKIE

XP_023519396.1 syndetin-like isoform X2 [Cucurbita pepo subsp. pepo]

3.0e-85

99.38

Show/hide

Query:  YVDRIANAKWEVKELGLEHNGYVDLLLGEFKHYKTRLAHSGVRKEVQDLLLEYGLDIVAETLIEGISRIKRCSDEGRALMSLDLQVLINGLQHFVSENVK
        YVDRIANAKWEVKELGLEHNGYVDLLLGEFKHYKTRLAHSGVRKEVQDLLLEYGLDIVAETLIEGISR+KRCSDEGRALMSLDLQVLINGLQHFVSENVK
Subjt:  YVDRIANAKWEVKELGLEHNGYVDLLLGEFKHYKTRLAHSGVRKEVQDLLLEYGLDIVAETLIEGISRIKRCSDEGRALMSLDLQVLINGLQHFVSENVK

Query:  PKLQMVETFIKAYYLPETEYVHWARAHPEYSKSQVIGLVNLVASMKGWKRKTRLEILEKIE
        PKLQMVETFIKAYYLPETEYVHWARAHPEYSKSQVIGLVNLVASMKGWKRKTRLEILEKIE
Subjt:  PKLQMVETFIKAYYLPETEYVHWARAHPEYSKSQVIGLVNLVASMKGWKRKTRLEILEKIE

TrEMBL top hits

e value

%identity

Alignment

A0A1S3CG39 syndetin

6.0e-84

96.89

Show/hide

Query:  YVDRIANAKWEVKELGLEHNGYVDLLLGEFKHYKTRLAHSGVRKEVQDLLLEYGLDIVAETLIEGISRIKRCSDEGRALMSLDLQVLINGLQHFVSENVK
        YVDRIANAKWEVKELGLEHNGYVDLLLGEFKHYKTRLAHSGVRKEVQDLLLEYGLDIVAETLIEGISRIKRCSDEGRALMSLDLQVLINGLQHFVS NVK
Subjt:  YVDRIANAKWEVKELGLEHNGYVDLLLGEFKHYKTRLAHSGVRKEVQDLLLEYGLDIVAETLIEGISRIKRCSDEGRALMSLDLQVLINGLQHFVSENVK

Query:  PKLQMVETFIKAYYLPETEYVHWARAHPEYSKSQVIGLVNLVASMKGWKRKTRLEILEKIE
        PKLQMV+TFIKAYYLPETEYVHWAR+HPEYSKSQ+IGLVN+VASMKGWKRKTRLEILEKIE
Subjt:  PKLQMVETFIKAYYLPETEYVHWARAHPEYSKSQVIGLVNLVASMKGWKRKTRLEILEKIE

A0A6J1HII5 syndetin-like isoform X1

1.1e-85

100

Show/hide

Query:  YVDRIANAKWEVKELGLEHNGYVDLLLGEFKHYKTRLAHSGVRKEVQDLLLEYGLDIVAETLIEGISRIKRCSDEGRALMSLDLQVLINGLQHFVSENVK
        YVDRIANAKWEVKELGLEHNGYVDLLLGEFKHYKTRLAHSGVRKEVQDLLLEYGLDIVAETLIEGISRIKRCSDEGRALMSLDLQVLINGLQHFVSENVK
Subjt:  YVDRIANAKWEVKELGLEHNGYVDLLLGEFKHYKTRLAHSGVRKEVQDLLLEYGLDIVAETLIEGISRIKRCSDEGRALMSLDLQVLINGLQHFVSENVK

Query:  PKLQMVETFIKAYYLPETEYVHWARAHPEYSKSQVIGLVNLVASMKGWKRKTRLEILEKIE
        PKLQMVETFIKAYYLPETEYVHWARAHPEYSKSQVIGLVNLVASMKGWKRKTRLEILEKIE
Subjt:  PKLQMVETFIKAYYLPETEYVHWARAHPEYSKSQVIGLVNLVASMKGWKRKTRLEILEKIE

A0A6J1HP30 syndetin-like isoform X2

1.1e-85

100

Show/hide

Query:  YVDRIANAKWEVKELGLEHNGYVDLLLGEFKHYKTRLAHSGVRKEVQDLLLEYGLDIVAETLIEGISRIKRCSDEGRALMSLDLQVLINGLQHFVSENVK
        YVDRIANAKWEVKELGLEHNGYVDLLLGEFKHYKTRLAHSGVRKEVQDLLLEYGLDIVAETLIEGISRIKRCSDEGRALMSLDLQVLINGLQHFVSENVK
Subjt:  YVDRIANAKWEVKELGLEHNGYVDLLLGEFKHYKTRLAHSGVRKEVQDLLLEYGLDIVAETLIEGISRIKRCSDEGRALMSLDLQVLINGLQHFVSENVK

Query:  PKLQMVETFIKAYYLPETEYVHWARAHPEYSKSQVIGLVNLVASMKGWKRKTRLEILEKIE
        PKLQMVETFIKAYYLPETEYVHWARAHPEYSKSQVIGLVNLVASMKGWKRKTRLEILEKIE
Subjt:  PKLQMVETFIKAYYLPETEYVHWARAHPEYSKSQVIGLVNLVASMKGWKRKTRLEILEKIE

A0A6J1I2F9 syndetin-like isoform X2

1.6e-84

98.76

Show/hide

Query:  YVDRIANAKWEVKELGLEHNGYVDLLLGEFKHYKTRLAHSGVRKEVQDLLLEYGLDIVAETLIEGISRIKRCSDEGRALMSLDLQVLINGLQHFVSENVK
        YVDRIANAKWEVKELGLEHNGYVDLLLGEFKHYKTRLAHSGVRKEVQDLLLEYGLDIVAETLIEGISRIKRCSDEGRALMSLDLQVLINGLQHFVS NVK
Subjt:  YVDRIANAKWEVKELGLEHNGYVDLLLGEFKHYKTRLAHSGVRKEVQDLLLEYGLDIVAETLIEGISRIKRCSDEGRALMSLDLQVLINGLQHFVSENVK

Query:  PKLQMVETFIKAYYLPETEYVHWARAHPEYSKSQVIGLVNLVASMKGWKRKTRLEILEKIE
        PKLQMVETFIKAYYLPETEYVHW RAHPEYSKSQVIGLVNLVASMKGWKRKTRLEILEKIE
Subjt:  PKLQMVETFIKAYYLPETEYVHWARAHPEYSKSQVIGLVNLVASMKGWKRKTRLEILEKIE

A0A6J1I532 syndetin-like isoform X1

1.6e-84

98.76

Show/hide

Query:  YVDRIANAKWEVKELGLEHNGYVDLLLGEFKHYKTRLAHSGVRKEVQDLLLEYGLDIVAETLIEGISRIKRCSDEGRALMSLDLQVLINGLQHFVSENVK
        YVDRIANAKWEVKELGLEHNGYVDLLLGEFKHYKTRLAHSGVRKEVQDLLLEYGLDIVAETLIEGISRIKRCSDEGRALMSLDLQVLINGLQHFVS NVK
Subjt:  YVDRIANAKWEVKELGLEHNGYVDLLLGEFKHYKTRLAHSGVRKEVQDLLLEYGLDIVAETLIEGISRIKRCSDEGRALMSLDLQVLINGLQHFVSENVK

Query:  PKLQMVETFIKAYYLPETEYVHWARAHPEYSKSQVIGLVNLVASMKGWKRKTRLEILEKIE
        PKLQMVETFIKAYYLPETEYVHW RAHPEYSKSQVIGLVNLVASMKGWKRKTRLEILEKIE
Subjt:  PKLQMVETFIKAYYLPETEYVHWARAHPEYSKSQVIGLVNLVASMKGWKRKTRLEILEKIE

SwissProt top hits

e value

%identity

Alignment

F1LSG8 Syndetin

3.9e-24

37.89

Show/hide

Query:  IANAKWEVKELGLEHNGYVDLLLGEFKHYKTRLAHSGVRKE----VQDLLLEYGLDIVAETLIEGISRIKRCSDEGRALMSLDLQVLINGLQHFVSENVK
        + N KW+VKE+  +HN YVD LL EF+ +  RL     R      V ++L E+ + +   T++EG + +K+CS+EGRALM LD Q  +  L+        
Subjt:  IANAKWEVKELGLEHNGYVDLLLGEFKHYKTRLAHSGVRKE----VQDLLLEYGLDIVAETLIEGISRIKRCSDEGRALMSLDLQVLINGLQHFVSENVK

Query:  PKLQMVETFIKAYYLPETEYVHWARAHPEYSKSQVIGLVNLVASMKGWKRKTRLEILEKIE
        P  + VE +IKAYYL E +   W + H EYS  Q+  LVN V       +K R ++L  I+
Subjt:  PKLQMVETFIKAYYLPETEYVHWARAHPEYSKSQVIGLVNLVASMKGWKRKTRLEILEKIE

Q5ZKV9 Syndetin

7.9e-25

39.13

Show/hide

Query:  IANAKWEVKELGLEHNGYVDLLLGEFKHYKTRLAHSGVRKE----VQDLLLEYGLDIVAETLIEGISRIKRCSDEGRALMSLDLQVLINGLQHFVSENVK
        +AN KW+VKE+  +HN YVD LL EF+ +  RL     R      V ++L E+ + +   TL+EG + +K+CS+EGRALM LD Q  +  L+        
Subjt:  IANAKWEVKELGLEHNGYVDLLLGEFKHYKTRLAHSGVRKE----VQDLLLEYGLDIVAETLIEGISRIKRCSDEGRALMSLDLQVLINGLQHFVSENVK

Query:  PKLQMVETFIKAYYLPETEYVHWARAHPEYSKSQVIGLVNLVASMKGWKRKTRLEILEKIE
        P  + VET+IKAYYL E +   W + H EYS   +  LVN V       +K R ++L  I+
Subjt:  PKLQMVETFIKAYYLPETEYVHWARAHPEYSKSQVIGLVNLVASMKGWKRKTRLEILEKIE

Q8CI71 Syndetin

1.4e-24

38.99

Show/hide

Query:  NAKWEVKELGLEHNGYVDLLLGEFKHYKTRLAHSGVRKE----VQDLLLEYGLDIVAETLIEGISRIKRCSDEGRALMSLDLQVLINGLQHFVSENVKPK
        N KW+VKE+  +HN YVD LL EF+ +  RL     R      V ++L E+ + +   T++EG + +K+CS+EGRALM LD Q  +  L+        P 
Subjt:  NAKWEVKELGLEHNGYVDLLLGEFKHYKTRLAHSGVRKE----VQDLLLEYGLDIVAETLIEGISRIKRCSDEGRALMSLDLQVLINGLQHFVSENVKPK

Query:  LQMVETFIKAYYLPETEYVHWARAHPEYSKSQVIGLVNLVASMKGWKRKTRLEILEKIE
         + VET+IKAYYL E +   W + H EYS  Q+  LVN V       +K R ++L  I+
Subjt:  LQMVETFIKAYYLPETEYVHWARAHPEYSKSQVIGLVNLVASMKGWKRKTRLEILEKIE

Q96JG6 Syndetin

3.6e-25

39.13

Show/hide

Query:  IANAKWEVKELGLEHNGYVDLLLGEFKHYKTRLAHSGVRKE----VQDLLLEYGLDIVAETLIEGISRIKRCSDEGRALMSLDLQVLINGLQHFVSENVK
        +AN KW+VKE+  +HN YVD LL EF+ +  RL     R      V ++L E+ + +   T++EG + +K+CS+EGRALM LD Q  +  L+        
Subjt:  IANAKWEVKELGLEHNGYVDLLLGEFKHYKTRLAHSGVRKE----VQDLLLEYGLDIVAETLIEGISRIKRCSDEGRALMSLDLQVLINGLQHFVSENVK

Query:  PKLQMVETFIKAYYLPETEYVHWARAHPEYSKSQVIGLVNLVASMKGWKRKTRLEILEKIE
        P  + VET+IKAYYL E +   W + H EYS  Q+  LVN V       +K R ++L  I+
Subjt:  PKLQMVETFIKAYYLPETEYVHWARAHPEYSKSQVIGLVNLVASMKGWKRKTRLEILEKIE

Arabidopsis top hits

e value

%identity

Alignment

AT2G27900.1 CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF2451, C-terminal (InterPro:IPR019514), Vacuolar protein sorting-associated protein 54 (InterPro:IPR019515); Has 316 Blast hits to 252 proteins in 92 species: Archae - 0; Bacteria - 2; Metazoa - 200; Fungi - 2; Plants - 68; Viruses - 0; Other Eukaryotes - 44 (source: NCBI BLink).

7.5e-79

83.23

Show/hide

Query:  YVDRIANAKWEVKELGLEHNGYVDLLLGEFKHYKTRLAHSGVRKEVQDLLLEYGLDIVAETLIEGISRIKRCSDEGRALMSLDLQVLINGLQHFVSENVK
        YVDRIAN+KWE+KELG+EHNGYVDL+LGEFKHYKTRLAH G+ +EVQ+LLLEYG++I AE L+EG+SRIKRC+DEGR LMSLDLQVLINGLQHFV   VK
Subjt:  YVDRIANAKWEVKELGLEHNGYVDLLLGEFKHYKTRLAHSGVRKEVQDLLLEYGLDIVAETLIEGISRIKRCSDEGRALMSLDLQVLINGLQHFVSENVK

Query:  PKLQMVETFIKAYYLPETEYVHWARAHPEYSKSQVIGLVNLVASMKGWKRKTRLEILEKIE
        PKLQ+VETFIKAYYLPETEYVHWARAHPEY+K+QV+GLVNLVA+MKGWKRKTRLE++EKIE
Subjt:  PKLQMVETFIKAYYLPETEYVHWARAHPEYSKSQVIGLVNLVASMKGWKRKTRLEILEKIE

AT2G27900.2 CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF2451, C-terminal (InterPro:IPR019514), Vacuolar protein sorting-associated protein 54 (InterPro:IPR019515); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).

7.5e-79

83.23

Show/hide

Query:  YVDRIANAKWEVKELGLEHNGYVDLLLGEFKHYKTRLAHSGVRKEVQDLLLEYGLDIVAETLIEGISRIKRCSDEGRALMSLDLQVLINGLQHFVSENVK
        YVDRIAN+KWE+KELG+EHNGYVDL+LGEFKHYKTRLAH G+ +EVQ+LLLEYG++I AE L+EG+SRIKRC+DEGR LMSLDLQVLINGLQHFV   VK
Subjt:  YVDRIANAKWEVKELGLEHNGYVDLLLGEFKHYKTRLAHSGVRKEVQDLLLEYGLDIVAETLIEGISRIKRCSDEGRALMSLDLQVLINGLQHFVSENVK

Query:  PKLQMVETFIKAYYLPETEYVHWARAHPEYSKSQVIGLVNLVASMKGWKRKTRLEILEKIE
        PKLQ+VETFIKAYYLPETEYVHWARAHPEY+K+QV+GLVNLVA+MKGWKRKTRLE++EKIE
Subjt:  PKLQMVETFIKAYYLPETEYVHWARAHPEYSKSQVIGLVNLVASMKGWKRKTRLEILEKIE

Sequences

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CDS sequence

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mRNA sequence

Show/hide mRNA sequence

ATGGTGACTCGCAGTGGGCAACTCTGCAGGCCTTATGCAGAGTACCATTCCAATCATATTTATGTTGACCGGATAGCCAATGCAAAATGGGAAGTAAAAGAGCTTGGACT
GGAGCATAATGGGTACGTCGACTTGTTATTGGGAGAATTCAAGCATTATAAAACAAGGCTGGCTCATAGCGGAGTTCGTAAGGAGGTTCAAGACCTCCTCTTGGAGTATG
GTCTGGATATTGTTGCAGAAACACTTATTGAAGGTATATCACGAATAAAGCGATGTTCCGATGAAGGACGTGCTCTCATGTCATTGGATCTTCAGGTTTTAATCAATGGC
TTGCAACATTTTGTTTCTGAGAATGTGAAGCCTAAGTTACAAATGGTTGAGACTTTCATTAAGGCGTACTACCTTCCAGAAACCGAATATGTACACTGGGCACGAGCTCA
CCCGGAATACAGTAAGAGCCAAGTTATTGGTTTGGTTAACCTCGTTGCATCAATGAAAGGGTGGAAGAGAAAAACCCGGTTGGAAATACTGGAAAAGATCGAGTGAGCCA
ATCGTAAGGGACGAACAGAGCATTTGAATCGCCCCACTCGAGTTCATTATAGGAAGGAATAATGTATGTGAAAATATGATTATAAGGTTAAAGTTTGTATAGTTCTTAAC
ATCTCATTCAAATATCATTATTCTCAAAGGCTAAGTTTAATTCTGCAGACATTCAATACATGAGCTGTTTATGGCACCAATGGTATTTGGTGGAATACAACGTTTGATTT
GTAGCATCTGTAAGTGTATGTAATCTCATATTATTACATGTTTAGTCTCTCTATAATGTCAAT

Protein sequence

Show/hide protein sequence

MVTRSGQLCRPYAEYHSNHIYVDRIANAKWEVKELGLEHNGYVDLLLGEFKHYKTRLAHSGVRKEVQDLLLEYGLDIVAETLIEGISRIKRCSDEGRALMSLDLQVLING
LQHFVSENVKPKLQMVETFIKAYYLPETEYVHWARAHPEYSKSQVIGLVNLVASMKGWKRKTRLEILEKIE

CmoCh13G002840 (gene) of Cucurbita moschata (Rifu) v1 genome