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CmoCh13G002900 (gene) of Cucurbita moschata (Rifu) v1 genome

Gene IDCmoCh13G002900
OrganismCucurbita moschata Rifu (Cucurbita moschata (Rifu) v1)
DescriptionNAD(P)H-quinone oxidoreductase subunit 2 A, chloroplastic
Genome locationCmo_Chr13:2642697..2642963
RNA-Seq ExpressionCmoCh13G002900
SyntenyCmoCh13G002900
Gene Ontology termsGO:0019684 - photosynthesis, light reaction (biological process)
GO:0042773 - ATP synthesis coupled electron transport (biological process)
GO:0005739 - mitochondrion (cellular component)
GO:0009535 - chloroplast thylakoid membrane (cellular component)
GO:0016021 - integral component of membrane (cellular component)
GO:0008137 - NADH dehydrogenase (ubiquinone) activity (molecular function)
GO:0048038 - quinone binding (molecular function)
InterPro domainsIPR001750 - NADH:quinone oxidoreductase/Mrp antiporter, membrane subunit


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAE9584279.1 putative NADH:ubiquinone reductase (H(+)-translocating) [Lupinus albus]2.3e-2774.47Show/hide
Query:  MYGLMRLLRNIYSWVEQVLLFWFMVSLAYMVYGSSGGEIELQEIVNGLLNTQMYNS------LIFITVGIGFKLSPTPAHQWTPDVYKGVRFVR
        MYGLMRLLRNIYSWV   +L    V     +YGSSGGEIELQEIVNGL+NTQMYNS      LIFITVGIGFKLSP P+HQWTPDVY+GVRFVR
Subjt:  MYGLMRLLRNIYSWVEQVLLFWFMVSLAYMVYGSSGGEIELQEIVNGLLNTQMYNS------LIFITVGIGFKLSPTPAHQWTPDVYKGVRFVR

KAF1856910.1 hypothetical protein Lal_00002013 [Lupinus albus]6.3e-2573.33Show/hide
Query:  MRLLRNIYSWVEQVLLFWFMVSLAYMVYGSSGGEIELQEIVNGLLNTQMYNS------LIFITVGIGFKLSPTPAHQWTPDVYKGVRFVR
        MRLLRNIYSWV   +L    V     +YGSSGGEIELQEIVNGL+NTQMYNS      LIFITVGIGFKLSP P+HQWTPDVY+GVRFVR
Subjt:  MRLLRNIYSWVEQVLLFWFMVSLAYMVYGSSGGEIELQEIVNGLLNTQMYNS------LIFITVGIGFKLSPTPAHQWTPDVYKGVRFVR

QHO54167.1 NAD(P)H-quinone oxidoreductase subunit 2 B [Arachis hypogaea]5.9e-3179.79Show/hide
Query:  MYGLMRLLRNIYSWVEQVLLFWFMVSLAYMVYGSSGGEIELQEIVNGLLNTQMYNS------LIFITVGIGFKLSPTPAHQWTPDVYKGVRFVR
        MYGLMRLLRNIYSWV Q LLFWFMVSL  MV+    GEIELQEIVNGL+NTQMYNS      LIFITVGIGFKLSP P+HQWTPDVY+GVRFVR
Subjt:  MYGLMRLLRNIYSWVEQVLLFWFMVSLAYMVYGSSGGEIELQEIVNGLLNTQMYNS------LIFITVGIGFKLSPTPAHQWTPDVYKGVRFVR

QVY59314.1 NADH dehydrogenase subunit 2 [Dendrobium zhenghuoense]1.0e-2778.65Show/hide
Query:  MYGLMRLLRNIYSWVEQVLLFWFMVSLAYMVYGSSGGEIELQEIVNGLLNTQMYNS------LIFITVGIGFKLSPTPAHQWTPDVYKG
        MYGLMRLLRNIYSWV Q LLFWFMV   YMVY   GGEIELQEIVNGL+NTQMYNS      LI ITVGIGFKLSP P HQWTPDVY+G
Subjt:  MYGLMRLLRNIYSWVEQVLLFWFMVSLAYMVYGSSGGEIELQEIVNGLLNTQMYNS------LIFITVGIGFKLSPTPAHQWTPDVYKG

YP_173451.1 hypothetical protein NitaMp113 [Nicotiana tabacum]2.8e-3382.11Show/hide
Query:  MYGLMRLLRNIYSWVEQVLLFWFMVSLAYMVY-GSSGGEIELQEIVNGLLNTQMYNS------LIFITVGIGFKLSPTPAHQWTPDVYKGVRFVR
        MYGLMR L NIYSWV Q LLFWFMVSL YMVY G SGGEIELQEIVNGL+NTQMYNS      LIFITVGIGFKLSP P+HQWTPDVY+GVRFVR
Subjt:  MYGLMRLLRNIYSWVEQVLLFWFMVSLAYMVY-GSSGGEIELQEIVNGLLNTQMYNS------LIFITVGIGFKLSPTPAHQWTPDVYKGVRFVR

TrEMBL top hitse value%identityAlignment
A0A251SRP0 Putative NADH:quinone oxidoreductase/Mrp antiporter, membrane subunit9.2e-2281.82Show/hide
Query:  YMVYGSSGGEIELQEIVNGLLNTQMYNS------LIFITVGIGFKLSPTPAHQWTPDVYKGVRFVR
        Y +YGSSGGEIELQEIVNGL+NTQMYNS      LIFITVGIGFKLSP P+HQWTPDVY+GVRFVR
Subjt:  YMVYGSSGGEIELQEIVNGLLNTQMYNS------LIFITVGIGFKLSPTPAHQWTPDVYKGVRFVR

A0A4Y7I930 Proton_antipo_M domain-containing protein7.1e-2282.81Show/hide
Query:  VYGSSGGEIELQEIVNGLLNTQMYNS------LIFITVGIGFKLSPTPAHQWTPDVYKGVRFVR
        +YGSSGGEIELQEIVNGL+NTQMYNS      LIFIT+GIGFKLSPTP+HQWTPDVY+GVRFVR
Subjt:  VYGSSGGEIELQEIVNGLLNTQMYNS------LIFITVGIGFKLSPTPAHQWTPDVYKGVRFVR

A0A6A4NAA6 Putative NADH:ubiquinone reductase (H(+)-translocating)1.1e-2774.47Show/hide
Query:  MYGLMRLLRNIYSWVEQVLLFWFMVSLAYMVYGSSGGEIELQEIVNGLLNTQMYNS------LIFITVGIGFKLSPTPAHQWTPDVYKGVRFVR
        MYGLMRLLRNIYSWV   +L    V     +YGSSGGEIELQEIVNGL+NTQMYNS      LIFITVGIGFKLSP P+HQWTPDVY+GVRFVR
Subjt:  MYGLMRLLRNIYSWVEQVLLFWFMVSLAYMVYGSSGGEIELQEIVNGLLNTQMYNS------LIFITVGIGFKLSPTPAHQWTPDVYKGVRFVR

A0A6A5LAL9 Proton_antipo_M domain-containing protein3.1e-2573.33Show/hide
Query:  MRLLRNIYSWVEQVLLFWFMVSLAYMVYGSSGGEIELQEIVNGLLNTQMYNS------LIFITVGIGFKLSPTPAHQWTPDVYKGVRFVR
        MRLLRNIYSWV   +L    V     +YGSSGGEIELQEIVNGL+NTQMYNS      LIFITVGIGFKLSP P+HQWTPDVY+GVRFVR
Subjt:  MRLLRNIYSWVEQVLLFWFMVSLAYMVYGSSGGEIELQEIVNGLLNTQMYNS------LIFITVGIGFKLSPTPAHQWTPDVYKGVRFVR

Q5M9W2 Proton_antipo_M domain-containing protein1.4e-3382.11Show/hide
Query:  MYGLMRLLRNIYSWVEQVLLFWFMVSLAYMVY-GSSGGEIELQEIVNGLLNTQMYNS------LIFITVGIGFKLSPTPAHQWTPDVYKGVRFVR
        MYGLMR L NIYSWV Q LLFWFMVSL YMVY G SGGEIELQEIVNGL+NTQMYNS      LIFITVGIGFKLSP P+HQWTPDVY+GVRFVR
Subjt:  MYGLMRLLRNIYSWVEQVLLFWFMVSLAYMVY-GSSGGEIELQEIVNGLLNTQMYNS------LIFITVGIGFKLSPTPAHQWTPDVYKGVRFVR

SwissProt top hitse value%identityAlignment
P0CC34 NAD(P)H-quinone oxidoreductase subunit 2 A, chloroplastic7.5e-2181.36Show/hide
Query:  VYGSSGGEIELQEIVNGLLNTQMYNS------LIFITVGIGFKLSPTPAHQWTPDVYKG
        +YGSSGGEIELQEIVNGL+NTQMYNS      LIFITVGIGFKLSP P+HQWTPDVY+G
Subjt:  VYGSSGGEIELQEIVNGLLNTQMYNS------LIFITVGIGFKLSPTPAHQWTPDVYKG

P0CC48 NAD(P)H-quinone oxidoreductase subunit 2 A, chloroplastic9.5e-2482.81Show/hide
Query:  VYGSSGGEIELQEIVNGLLNTQMYNS------LIFITVGIGFKLSPTPAHQWTPDVYKGVRFVR
        +YGSSGGEIELQEIVNGL+NTQMYNS      LIFITVGIGFKLSP P+HQWTPDVY+GVRFVR
Subjt:  VYGSSGGEIELQEIVNGLLNTQMYNS------LIFITVGIGFKLSPTPAHQWTPDVYKGVRFVR

P0CC49 NAD(P)H-quinone oxidoreductase subunit 2 B, chloroplastic9.5e-2482.81Show/hide
Query:  VYGSSGGEIELQEIVNGLLNTQMYNS------LIFITVGIGFKLSPTPAHQWTPDVYKGVRFVR
        +YGSSGGEIELQEIVNGL+NTQMYNS      LIFITVGIGFKLSP P+HQWTPDVY+GVRFVR
Subjt:  VYGSSGGEIELQEIVNGLLNTQMYNS------LIFITVGIGFKLSPTPAHQWTPDVYKGVRFVR

P0CC50 NAD(P)H-quinone oxidoreductase subunit 2 A, chloroplastic4.4e-2183.05Show/hide
Query:  VYGSSGGEIELQEIVNGLLNTQMYNS------LIFITVGIGFKLSPTPAHQWTPDVYKG
        +YGSSGGEIELQEIVNGLLNTQMYNS      LIFITVGIGFKLSP P+HQWTPDVY+G
Subjt:  VYGSSGGEIELQEIVNGLLNTQMYNS------LIFITVGIGFKLSPTPAHQWTPDVYKG

P0CC51 NAD(P)H-quinone oxidoreductase subunit 2 B, chloroplastic4.4e-2183.05Show/hide
Query:  VYGSSGGEIELQEIVNGLLNTQMYNS------LIFITVGIGFKLSPTPAHQWTPDVYKG
        +YGSSGGEIELQEIVNGLLNTQMYNS      LIFITVGIGFKLSP P+HQWTPDVY+G
Subjt:  VYGSSGGEIELQEIVNGLLNTQMYNS------LIFITVGIGFKLSPTPAHQWTPDVYKG

Arabidopsis top hitse value%identityAlignment
ATCG00890.1 NADH-Ubiquinone/plastoquinone (complex I) protein7.7e-2179.66Show/hide
Query:  VYGSSGGEIELQEIVNGLLNTQMYNS------LIFITVGIGFKLSPTPAHQWTPDVYKG
        +YGSSGGEIELQEIVNGL+NTQMYNS      LIFITVGIGFKLS  P+HQWTPDVY+G
Subjt:  VYGSSGGEIELQEIVNGLLNTQMYNS------LIFITVGIGFKLSPTPAHQWTPDVYKG

ATCG01250.1 NADH-Ubiquinone/plastoquinone (complex I) protein7.7e-2179.66Show/hide
Query:  VYGSSGGEIELQEIVNGLLNTQMYNS------LIFITVGIGFKLSPTPAHQWTPDVYKG
        +YGSSGGEIELQEIVNGL+NTQMYNS      LIFITVGIGFKLS  P+HQWTPDVY+G
Subjt:  VYGSSGGEIELQEIVNGLLNTQMYNS------LIFITVGIGFKLSPTPAHQWTPDVYKG

ATMG00285.1 NADH dehydrogenase 2A1.3e-0439.34Show/hide
Query:  MVYGSSGGE--IELQEIVNGLLNTQMYNSLIF-----ITVGIGFKLSPTPAHQWTPDVYKG
        M+YGS+G     +L +I+ G   T   +S IF     I VG  FK++  P H W PD+Y+G
Subjt:  MVYGSSGGE--IELQEIVNGLLNTQMYNSLIF-----ITVGIGFKLSPTPAHQWTPDVYKG

ATMG01320.1 NADH dehydrogenase 2B1.3e-0439.34Show/hide
Query:  MVYGSSGGE--IELQEIVNGLLNTQMYNSLIF-----ITVGIGFKLSPTPAHQWTPDVYKG
        M+YGS+G     +L +I+ G   T   +S IF     I VG  FK++  P H W PD+Y+G
Subjt:  MVYGSSGGE--IELQEIVNGLLNTQMYNSLIF-----ITVGIGFKLSPTPAHQWTPDVYKG


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGTACGGTCTAATGAGGCTACTACGAAATATTTACTCATGGGTGGAGCAAGTTCTTCTATTCTGGTTCATGGTTTCTCTTGCCTATATGGTATATGGTTCATCCGGTGG
AGAGATCGAGCTTCAAGAAATAGTAAATGGTCTTCTCAATACACAAATGTATAACTCGCTTATATTCATCACTGTAGGAATTGGGTTCAAGCTTTCCCCAACCCCTGCTC
ATCAATGGACTCCTGACGTATACAAAGGCGTGCGGTTCGTTCGATAA
mRNA sequenceShow/hide mRNA sequence
ATGTACGGTCTAATGAGGCTACTACGAAATATTTACTCATGGGTGGAGCAAGTTCTTCTATTCTGGTTCATGGTTTCTCTTGCCTATATGGTATATGGTTCATCCGGTGG
AGAGATCGAGCTTCAAGAAATAGTAAATGGTCTTCTCAATACACAAATGTATAACTCGCTTATATTCATCACTGTAGGAATTGGGTTCAAGCTTTCCCCAACCCCTGCTC
ATCAATGGACTCCTGACGTATACAAAGGCGTGCGGTTCGTTCGATAA
Protein sequenceShow/hide protein sequence
MYGLMRLLRNIYSWVEQVLLFWFMVSLAYMVYGSSGGEIELQEIVNGLLNTQMYNSLIFITVGIGFKLSPTPAHQWTPDVYKGVRFVR