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CmoCh13G002990 (gene) of Cucurbita moschata (Rifu) v1 genome

Gene IDCmoCh13G002990
OrganismCucurbita moschata Rifu (Cucurbita moschata (Rifu) v1)
DescriptionRibosomal protein L2
Genome locationCmo_Chr13:3256434..3257758
RNA-Seq ExpressionCmoCh13G002990
SyntenyCmoCh13G002990
Gene Ontology termsGO:0006412 - translation (biological process)
GO:0005739 - mitochondrion (cellular component)
GO:0005840 - ribosome (cellular component)
GO:0003735 - structural constituent of ribosome (molecular function)
InterPro domainsIPR002171 - Ribosomal protein L2


Homology Show/hide homology
GenBank top hitse value%identityAlignment
QXX99528.1 ribosomal protein L2 [Macadamia integrifolia]2.9e-2877.78Show/hide
Query:  FPRIVVAGAKTAFFAPRMREKVRGKNTFSLCE-----------AHRMKRKAALDWQSFRRQETDGLVGGAEHNESKLETDLASLPAKPIG
        FPRI VAGAK AFFAPRMREKVRGKNTFSLCE           AHR+KRKAAL WQSFRRQETDGLVG AEHNESK +TD  SLPAKPIG
Subjt:  FPRIVVAGAKTAFFAPRMREKVRGKNTFSLCE-----------AHRMKRKAALDWQSFRRQETDGLVGGAEHNESKLETDLASLPAKPIG

XP_023521202.1 LOW QUALITY PROTEIN: uncharacterized protein LOC111784913 [Cucurbita pepo subsp. pepo]5.2e-3080.65Show/hide
Query:  PNRFPRIVVAGAKTAFFAPRMREKVRGKNTFSLCE-----------AHRMKRKAALDWQSFRRQETDGLVGGAEHNESKLETDLASLPAKPIG
        P  FPRIVVAGA  AFFAPRMREKVRG NTFSLCE           AHRMKRKAALDWQSFRRQETDGLVGGAEHNESK ETD ASLPAKPIG
Subjt:  PNRFPRIVVAGAKTAFFAPRMREKVRGKNTFSLCE-----------AHRMKRKAALDWQSFRRQETDGLVGGAEHNESKLETDLASLPAKPIG

XP_042504770.1 LOW QUALITY PROTEIN: 60S ribosomal protein L2, mitochondrial [Macadamia integrifolia]2.9e-2877.78Show/hide
Query:  FPRIVVAGAKTAFFAPRMREKVRGKNTFSLCE-----------AHRMKRKAALDWQSFRRQETDGLVGGAEHNESKLETDLASLPAKPIG
        FPRI VAGAK AFFAPRMREKVRGKNTFSLCE           AHR+KRKAAL WQSFRRQETDGLVG AEHNESK +TD  SLPAKPIG
Subjt:  FPRIVVAGAKTAFFAPRMREKVRGKNTFSLCE-----------AHRMKRKAALDWQSFRRQETDGLVGGAEHNESKLETDLASLPAKPIG

YP_003587363.1 ribosomal protein L2 [Cucurbita pepo]6.2e-3183.33Show/hide
Query:  FPRIVVAGAKTAFFAPRMREKVRGKNTFSLCE-----------AHRMKRKAALDWQSFRRQETDGLVGGAEHNESKLETDLASLPAKPIG
        FPRI VAGAK AFFAPRMREKVRGKNTFSLCE           AHRMKRKAALDWQSFRRQETDGLVGGAEHNESK ETD ASLPAKPIG
Subjt:  FPRIVVAGAKTAFFAPRMREKVRGKNTFSLCE-----------AHRMKRKAALDWQSFRRQETDGLVGGAEHNESKLETDLASLPAKPIG

YP_009913619.1 ribosomal protein L2 [Luffa acutangula]6.4e-2877.78Show/hide
Query:  FPRIVVAGAKTAFFAPRMREKVRGKNTFSLCE-----------AHRMKRKAALDWQSFRRQETDGLVGGAEHNESKLETDLASLPAKPIG
        FPRI VAGAK AFFAPRMREK+RGKNTFSLCE           AHRMKRKAAL W+SFRRQET GLVGGAEHNESK ETD  SLPAKPIG
Subjt:  FPRIVVAGAKTAFFAPRMREKVRGKNTFSLCE-----------AHRMKRKAALDWQSFRRQETDGLVGGAEHNESKLETDLASLPAKPIG

TrEMBL top hitse value%identityAlignment
A0A5C1H967 Ribosomal protein L22.0e-2776.67Show/hide
Query:  FPRIVVAGAKTAFFAPRMREKVRGKNTFSLCE-----------AHRMKRKAALDWQSFRRQETDGLVGGAEHNESKLETDLASLPAKPIG
        FPRI VAGAK AFFAPRMREKVRGKNTFSLCE           AHR+KRKAAL WQSFRRQET GLVG AEHNESK +TD  SLPAKPIG
Subjt:  FPRIVVAGAKTAFFAPRMREKVRGKNTFSLCE-----------AHRMKRKAALDWQSFRRQETDGLVGGAEHNESKLETDLASLPAKPIG

A0A5C2I4L3 Ribosomal protein L22.0e-2776.67Show/hide
Query:  FPRIVVAGAKTAFFAPRMREKVRGKNTFSLCE-----------AHRMKRKAALDWQSFRRQETDGLVGGAEHNESKLETDLASLPAKPIG
        FPRI VAGAK AFFAPRMREKVRGKNTFSLCE           AHR+KRKAAL WQSFRRQET GLVG AEHNESK +TD  SLPAKPIG
Subjt:  FPRIVVAGAKTAFFAPRMREKVRGKNTFSLCE-----------AHRMKRKAALDWQSFRRQETDGLVGGAEHNESKLETDLASLPAKPIG

A0A7D5XZ32 Ribosomal protein L23.1e-2877.78Show/hide
Query:  FPRIVVAGAKTAFFAPRMREKVRGKNTFSLCE-----------AHRMKRKAALDWQSFRRQETDGLVGGAEHNESKLETDLASLPAKPIG
        FPRI VAGAK AFFAPRMREK+RGKNTFSLCE           AHRMKRKAAL W+SFRRQET GLVGGAEHNESK ETD  SLPAKPIG
Subjt:  FPRIVVAGAKTAFFAPRMREKVRGKNTFSLCE-----------AHRMKRKAALDWQSFRRQETDGLVGGAEHNESKLETDLASLPAKPIG

D5I3E9 Ribosomal protein L23.0e-3183.33Show/hide
Query:  FPRIVVAGAKTAFFAPRMREKVRGKNTFSLCE-----------AHRMKRKAALDWQSFRRQETDGLVGGAEHNESKLETDLASLPAKPIG
        FPRI VAGAK AFFAPRMREKVRGKNTFSLCE           AHRMKRKAALDWQSFRRQETDGLVGGAEHNESK ETD ASLPAKPIG
Subjt:  FPRIVVAGAKTAFFAPRMREKVRGKNTFSLCE-----------AHRMKRKAALDWQSFRRQETDGLVGGAEHNESKLETDLASLPAKPIG

V9PBK5 Ribosomal protein L26.9e-2876.67Show/hide
Query:  FPRIVVAGAKTAFFAPRMREKVRGKNTFSLCE-----------AHRMKRKAALDWQSFRRQETDGLVGGAEHNESKLETDLASLPAKPIG
        FPRI VAGAK AFFAPRMREKVRGKNTF LCE           AHR+KRKAAL WQSFRRQETDGLVG AEHNESK +TD  SLPAKPIG
Subjt:  FPRIVVAGAKTAFFAPRMREKVRGKNTFSLCE-----------AHRMKRKAALDWQSFRRQETDGLVGGAEHNESKLETDLASLPAKPIG

SwissProt top hitse value%identityAlignment
P0C8K6 60S ribosomal protein L2, mitochondrial1.8e-2065.48Show/hide
Query:  FPRIVVAGAKTAFFAPRMREKVRGKNTFSLCE-----------AHRMKRKAALDWQSFRRQETDGLVGGAEHNESKLETDLASL
        FPRI VAGAK AFFA RMREK  GK TFSLCE           AHR+KRKAAL WQS R+Q+T  LVG AEHNESKL+ D  SL
Subjt:  FPRIVVAGAKTAFFAPRMREKVRGKNTFSLCE-----------AHRMKRKAALDWQSFRRQETDGLVGGAEHNESKLETDLASL

P92812 60S ribosomal protein L2, mitochondrial1.8e-2065.48Show/hide
Query:  FPRIVVAGAKTAFFAPRMREKVRGKNTFSLCE-----------AHRMKRKAALDWQSFRRQETDGLVGGAEHNESKLETDLASL
        FPRI VAGAK AFFA RMREK  GK TFSLCE           AHR+KRKAAL WQS R+Q+T  LVG AEHNESKL+ D  SL
Subjt:  FPRIVVAGAKTAFFAPRMREKVRGKNTFSLCE-----------AHRMKRKAALDWQSFRRQETDGLVGGAEHNESKLETDLASL

P93311 60S ribosomal protein L2, mitochondrial4.0e-2566.67Show/hide
Query:  FPRIVVAGAKTAFFAPRMREKVRGKNTFSLCE-----------AHRMKRKAALDWQSFRRQETDGLVGGAEHNESKLETDLASLPAKPIG
        FPRI VAGAK AFFAPRMR+KVRGK+TFSLCE           AHR+K KA L WQSFRRQ+T GLVG A H +SK +TD  +LPAKPIG
Subjt:  FPRIVVAGAKTAFFAPRMREKVRGKNTFSLCE-----------AHRMKRKAALDWQSFRRQETDGLVGGAEHNESKLETDLASLPAKPIG

Q2F969 60S ribosomal protein L2, mitochondrial1.8e-2065.48Show/hide
Query:  FPRIVVAGAKTAFFAPRMREKVRGKNTFSLCE-----------AHRMKRKAALDWQSFRRQETDGLVGGAEHNESKLETDLASL
        FPRI VAGAK AFFA RMREK  GK TFSLCE           AHR+KRKAAL WQS R+Q+T  LVG AEHNESKL+ D  SL
Subjt:  FPRIVVAGAKTAFFAPRMREKVRGKNTFSLCE-----------AHRMKRKAALDWQSFRRQETDGLVGGAEHNESKLETDLASL

Arabidopsis top hitse value%identityAlignment
AT2G07715.1 Nucleic acid-binding, OB-fold-like protein2.9e-2666.67Show/hide
Query:  FPRIVVAGAKTAFFAPRMREKVRGKNTFSLCE-----------AHRMKRKAALDWQSFRRQETDGLVGGAEHNESKLETDLASLPAKPIG
        FPRI VAGAK AFFAPRMR+KVRGK+TFSLCE           AHR+K KA L WQSFRRQ+T GLVG A H +SK +TD  +LPAKPIG
Subjt:  FPRIVVAGAKTAFFAPRMREKVRGKNTFSLCE-----------AHRMKRKAALDWQSFRRQETDGLVGGAEHNESKLETDLASLPAKPIG

ATMG00560.1 Nucleic acid-binding, OB-fold-like protein2.9e-2666.67Show/hide
Query:  FPRIVVAGAKTAFFAPRMREKVRGKNTFSLCE-----------AHRMKRKAALDWQSFRRQETDGLVGGAEHNESKLETDLASLPAKPIG
        FPRI VAGAK AFFAPRMR+KVRGK+TFSLCE           AHR+K KA L WQSFRRQ+T GLVG A H +SK +TD  +LPAKPIG
Subjt:  FPRIVVAGAKTAFFAPRMREKVRGKNTFSLCE-----------AHRMKRKAALDWQSFRRQETDGLVGGAEHNESKLETDLASLPAKPIG


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGGCATTGTAGAAAGAATTGAATATGACCCTAATCGTTTCCCAAGGATAGTGGTGGCTGGGGCAAAGACGGCTTTCTTTGCTCCACGAATGAGAGAGAAAGTCAGAGG
AAAAAATACGTTCTCTCTTTGCGAGGCACACAGGATGAAACGTAAAGCAGCACTTGATTGGCAGAGTTTTAGGCGGCAAGAGACTGACGGGCTTGTTGGAGGTGCTGAGC
ATAACGAATCGAAACTAGAGACGGATCTAGCTAGCTTGCCTGCCAAGCCGATAGGCTAA
mRNA sequenceShow/hide mRNA sequence
ATGGGCATTGTAGAAAGAATTGAATATGACCCTAATCGTTTCCCAAGGATAGTGGTGGCTGGGGCAAAGACGGCTTTCTTTGCTCCACGAATGAGAGAGAAAGTCAGAGG
AAAAAATACGTTCTCTCTTTGCGAGGCACACAGGATGAAACGTAAAGCAGCACTTGATTGGCAGAGTTTTAGGCGGCAAGAGACTGACGGGCTTGTTGGAGGTGCTGAGC
ATAACGAATCGAAACTAGAGACGGATCTAGCTAGCTTGCCTGCCAAGCCGATAGGCTAA
Protein sequenceShow/hide protein sequence
MGIVERIEYDPNRFPRIVVAGAKTAFFAPRMREKVRGKNTFSLCEAHRMKRKAALDWQSFRRQETDGLVGGAEHNESKLETDLASLPAKPIG