; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

CmoCh13G003040 (gene) of Cucurbita moschata (Rifu) v1 genome

Gene IDCmoCh13G003040
OrganismCucurbita moschata Rifu (Cucurbita moschata (Rifu) v1)
DescriptionDNA-directed RNA polymerase subunit beta
Genome locationCmo_Chr13:3305185..3315887
RNA-Seq ExpressionCmoCh13G003040
SyntenyCmoCh13G003040
Gene Ontology termsGO:0006351 - transcription, DNA-templated (biological process)
GO:0009507 - chloroplast (cellular component)
GO:0003677 - DNA binding (molecular function)
GO:0003899 - DNA-directed 5'-3' RNA polymerase activity (molecular function)
GO:0032549 - ribonucleoside binding (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
ALI91067.1 RpoB, partial [Discophora guianensis]5.8e-0766Show/hide
Query:  SKMYRPVSKQRVHGYLIE-EYPGKSSRIFDGRMGNPFEHPVIIGKPYIFQ
        S++Y   SKQ  + ++ E EYPGK SRIFDGR GNPFEHPVIIGKPYI +
Subjt:  SKMYRPVSKQRVHGYLIE-EYPGKSSRIFDGRMGNPFEHPVIIGKPYIFQ
QWY85436.1 RNA polymerase beta subunit [Erythrophleum suaveolens]1.7e-0664Show/hide
Query:  SKMYRPVSKQRVHGYLIE-EYPGKSSRIFDGRMGNPFEHPVIIGKPYIFQ
        S++Y   SKQ  + ++ E EYPGK SRIFDGR G+PFEHPVIIGKPYI +
Subjt:  SKMYRPVSKQRVHGYLIE-EYPGKSSRIFDGRMGNPFEHPVIIGKPYIFQ
YP_008964859.1 RNA polymerase beta subunit [Schwalbea americana]9.8e-0766Show/hide
Query:  SKMYRPVSKQRVHGYLIE-EYPGKSSRIFDGRMGNPFEHPVIIGKPYIFQ
        S++Y   SKQ  + ++ E EYPGK SRIFDGRMGNPFE PVIIGKPYI +
Subjt:  SKMYRPVSKQRVHGYLIE-EYPGKSSRIFDGRMGNPFEHPVIIGKPYIFQ
YP_009731746.1 RNA polymerase beta subunit [Siphonostegia chinensis]1.7e-0664Show/hide
Query:  SKMYRPVSKQRVHGYLIE-EYPGKSSRIFDGRMGNPFEHPVIIGKPYIFQ
        S++Y   SKQ  + ++ E EYPGK SR+FDGRMGNPFE PVIIGKPYI +
Subjt:  SKMYRPVSKQRVHGYLIE-EYPGKSSRIFDGRMGNPFEHPVIIGKPYIFQ
YP_010160219.1 RNA polymerase beta subunit [Scrophularia cephalantha]1.7e-0666Show/hide
Query:  SKMYRPVSKQRVHGYLIE-EYPGKSSRIFDGRMGNPFEHPVIIGKPYIFQ
        S++Y   SKQ V+ ++ E EYPGK SRIFDGR GNPFE PVIIGKPYI +
Subjt:  SKMYRPVSKQRVHGYLIE-EYPGKSSRIFDGRMGNPFEHPVIIGKPYIFQ
TrEMBL top hitse value%identityAlignment
A0A0S0ZKU8 DNA-directed RNA polymerase subunit beta (Fragment)2.8e-0766Show/hide
Query:  SKMYRPVSKQRVHGYLIE-EYPGKSSRIFDGRMGNPFEHPVIIGKPYIFQ
        S++Y   SKQ  + ++ E EYPGK SRIFDGR GNPFEHPVIIGKPYI +
Subjt:  SKMYRPVSKQRVHGYLIE-EYPGKSSRIFDGRMGNPFEHPVIIGKPYIFQ
A0A1L2FNT8 DNA-directed RNA polymerase subunit beta1.1e-0664Show/hide
Query:  SKMYRPVSKQRVHGYLIE-EYPGKSSRIFDGRMGNPFEHPVIIGKPYIFQ
        S++Y+  SKQ V+ ++ E EYPGK SRIFDGR GNPFE PV+IGKPYI +
Subjt:  SKMYRPVSKQRVHGYLIE-EYPGKSSRIFDGRMGNPFEHPVIIGKPYIFQ
A0A6B9XL95 DNA-directed RNA polymerase subunit beta8.1e-0764Show/hide
Query:  SKMYRPVSKQRVHGYLIE-EYPGKSSRIFDGRMGNPFEHPVIIGKPYIFQ
        S++Y   SKQ  + ++ E EYPGK SR+FDGRMGNPFE PVIIGKPYI +
Subjt:  SKMYRPVSKQRVHGYLIE-EYPGKSSRIFDGRMGNPFEHPVIIGKPYIFQ
A0A6G7S8J3 DNA-directed RNA polymerase subunit beta1.1e-0664Show/hide
Query:  SKMYRPVSKQRVHGYLIE-EYPGKSSRIFDGRMGNPFEHPVIIGKPYIFQ
        S++Y+  SKQ V+ ++ E EYPGK SRIFDGR GNPFE PV+IGKPYI +
Subjt:  SKMYRPVSKQRVHGYLIE-EYPGKSSRIFDGRMGNPFEHPVIIGKPYIFQ
V6BQG7 DNA-directed RNA polymerase subunit beta4.8e-0766Show/hide
Query:  SKMYRPVSKQRVHGYLIE-EYPGKSSRIFDGRMGNPFEHPVIIGKPYIFQ
        S++Y   SKQ  + ++ E EYPGK SRIFDGRMGNPFE PVIIGKPYI +
Subjt:  SKMYRPVSKQRVHGYLIE-EYPGKSSRIFDGRMGNPFEHPVIIGKPYIFQ
SwissProt top hitse value%identityAlignment
Q2MIA8 DNA-directed RNA polymerase subunit beta6.4e-0964Show/hide
Query:  SKMYRPVSKQRVHGYLIE-EYPGKSSRIFDGRMGNPFEHPVIIGKPYIFQ
        S++Y   SKQ  + ++ E EYPGK SRIFDGR GNPFE PVIIGKPYI +
Subjt:  SKMYRPVSKQRVHGYLIE-EYPGKSSRIFDGRMGNPFEHPVIIGKPYIFQ
Q2MIJ5 DNA-directed RNA polymerase subunit beta6.4e-0964Show/hide
Query:  SKMYRPVSKQRVHGYLIE-EYPGKSSRIFDGRMGNPFEHPVIIGKPYIFQ
        S++Y   SKQ  + ++ E EYPGK SRIFDGR GNPFE PVIIGKPYI +
Subjt:  SKMYRPVSKQRVHGYLIE-EYPGKSSRIFDGRMGNPFEHPVIIGKPYIFQ
Q33C46 DNA-directed RNA polymerase subunit beta6.4e-0964Show/hide
Query:  SKMYRPVSKQRVHGYLIE-EYPGKSSRIFDGRMGNPFEHPVIIGKPYIFQ
        S++Y   SKQ  + ++ E EYPGK SRIFDGR GNPFE PVIIGKPYI +
Subjt:  SKMYRPVSKQRVHGYLIE-EYPGKSSRIFDGRMGNPFEHPVIIGKPYIFQ
Q3C1G7 DNA-directed RNA polymerase subunit beta6.4e-0964Show/hide
Query:  SKMYRPVSKQRVHGYLIE-EYPGKSSRIFDGRMGNPFEHPVIIGKPYIFQ
        S++Y   SKQ  + ++ E EYPGK SRIFDGR GNPFE PVIIGKPYI +
Subjt:  SKMYRPVSKQRVHGYLIE-EYPGKSSRIFDGRMGNPFEHPVIIGKPYIFQ
Q8S8X9 DNA-directed RNA polymerase subunit beta6.4e-0964Show/hide
Query:  SKMYRPVSKQRVHGYLIE-EYPGKSSRIFDGRMGNPFEHPVIIGKPYIFQ
        S++Y   SKQ  + ++ E EYPGK SRIFDGR GNPFE PVIIGKPYI +
Subjt:  SKMYRPVSKQRVHGYLIE-EYPGKSSRIFDGRMGNPFEHPVIIGKPYIFQ
Arabidopsis top hitse value%identityAlignment
ATCG00190.1 RNA polymerase subunit beta1.7e-0962Show/hide
Query:  SKMYRPVSKQRVHGYLIE-EYPGKSSRIFDGRMGNPFEHPVIIGKPYIFQ
        S++Y   SKQ  + ++ E EYPGK SRIFDGR G+PFE PVIIGKPYI +
Subjt:  SKMYRPVSKQRVHGYLIE-EYPGKSSRIFDGRMGNPFEHPVIIGKPYIFQ

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGAGGCATGATCTTCCCTACCTAACCTGGCTGCACCACATGCAGCTCAGCAAAATGTACAGGCCAGTAAGCAAACAGCGAGTCCATGGGTATTTGATTGAAGAGTATCC
GGGAAAAAGCAGCAGAATATTTGATGGAAGAATGGGAAATCCTTTTGAACACCCTGTCATAATAGGAAAACCTTATATCTTTCAATGA
mRNA sequenceShow/hide mRNA sequence
ATGAGGCATGATCTTCCCTACCTAACCTGGCTGCACCACATGCAGCTCAGCAAAATGTACAGGCCAGTAAGCAAACAGCGAGTCCATGGGTATTTGATTGAAGAGTATCC
GGGAAAAAGCAGCAGAATATTTGATGGAAGAATGGGAAATCCTTTTGAACACCCTGTCATAATAGGAAAACCTTATATCTTTCAATGA
Protein sequenceShow/hide protein sequence
MRHDLPYLTWLHHMQLSKMYRPVSKQRVHGYLIEEYPGKSSRIFDGRMGNPFEHPVIIGKPYIFQ